|
| Status |
Public on May 22, 2012 |
| Title |
Stanford_ChipSeq_GM10847_TNFa_Input_IgG-rab |
| Sample type |
SRA |
| |
|
| Source name |
GM10847
|
| Organism |
Homo sapiens |
| Characteristics |
lab: Stanford
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: GM10847
cell organism: human
cell description: lymphoblastoid, International HapMap Project, CEPH/Utah, treatment: Epstein-Barr Virus transformed
cell karyotype: normal
cell lineage: mesoderm
cell sex: F
treatment: TNFa
treatment description: human recombinant TNF-alpha from eBioscience [product# 14-8329-62] (Snyder)
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
control: IgG-rab
control description: Input signal from Normal Rabbit IgG ChIP-seq.
controlid: wgEncodeEH000770
labversion: remapped from hg18, Illumina 2.0, low confidence sequences excluded
replicate: 1
|
| Biomaterial provider |
Coriell
|
| Treatment protocol |
TNFa
|
| Growth protocol |
GM-generalized_Snyder_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
| |
|
| Submission date |
May 22, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
[email protected]
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE31477 |
ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard |
|
| Relations |
| SRA |
SRX150530 |
| BioSample |
SAMN01000990 |
| Named Annotation |
GSM935451_hg19_wgEncodeSydhTfbsGm10847InputTnfaIggrabSig.bigWig |
