|
| Status |
Public on May 22, 2012 |
| Title |
USC_ChipSeq_HEK293_Input_UCDavis (superseded by GSE136429) |
| Sample type |
SRA |
| |
|
| Source name |
HEK293
|
| Organism |
Homo sapiens |
| Characteristics |
biomaterial_type: immortalized cell line
lab: USC
lab description: Farnham - University of Southern California
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
line: HEK293
cell organism: human
cell description: embryonic kidney, cells contain Adenovirus 5 DNA (PMID: 11967234)
cell karyotype: normal
cell lineage: mesoderm
cell sex: U
treatment: None
treatment description: No special treatment or protocol applies
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
control: UCDavis
control description: Input library was prepared at UC Davis.
control: UCDavis
control description: Input library was prepared at UC Davis.
controlid: wgEncodeEH001777
|
| Biomaterial provider |
ATCC
|
| Treatment protocol |
None
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Description |
****************************
GSM935586 record metadata submitted on May 22 2012 may be obsolete, up to date experimental metadata was resubmitted by ENCODE DCC and is available at GSE136429
****************************
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeSydhTfbs
|
| |
|
| Submission date |
May 22, 2012 |
| Last update date |
Nov 20, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
[email protected]
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE31477 |
ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard |
|
| Relations |
| Superseded by |
GSE136429 |
| SRA |
SRX150665 |
| BioSample |
SAMN01001125 |
| Named Annotation |
GSM935586_hg19_wgEncodeSydhTfbsHek293InputUcdSig.bigWig |
