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Sample GSM9650 Query DataSets for GSM9650
Status Public on Feb 01, 2004
Title G1E_30_B
Sample type RNA
 
Source name G1E, ER4 clone, 30 hours post-estradiol
Organism Mus musculus
Extracted molecule total RNA
 
Description G1E cells are a Gata-1 erythroid-committed cell line derived from targeted disruption of Gata-1 in embryonic stem cells. The ER4 subclone contains an inducible form of Gata-1 (Gata-1-ER, Gata-1 fused to the estradiol ligand binding domain). We performed transcriptome analysis using this cell line. Estradiol was added to culture medium triggering synchronous and homogenous differentiation. At various time points, RNA was sampled and analyzed using the Affymetrix MG-U74Av2 platform. Three biological replicas (A,B, and C) were performed. The thirty hour time course corresponds to development from the late BFU-E stage through the orthochromatic erythroblast stage.
 
Submission date Sep 04, 2003
Last update date May 28, 2005
Contact name John J. Welch
E-mail(s) [email protected]
Phone 215-590-0558
Fax 215-590-4834
Organization name Children's Hospital of Philadelphia
Department Division of Hematology
Lab Weiss Laboratory
Street address 34th & Civic Center Blvd.
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL81
Series (1)
GSE628 Erythroid Differentiation: G1E Model

Data table header descriptions
ID_REF
VALUE MAS 5.0 Signal, normalized to 150
ABS_CALL Affymetrix Present/Absent Call
DETECTION_P MAS 5.0 detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION_P
AFFX-MurIL2_at 4.5 A 0.973889
AFFX-MurIL10_at 19.9 A 0.645547
AFFX-MurIL4_at 182.8 P 0.000857
AFFX-MurFAS_at 4.9 A 0.891021
AFFX-BioB-5_at 439.7 P 0.000147
AFFX-BioB-M_at 1200 P 0.000044
AFFX-BioB-3_at 521.8 P 0.000044
AFFX-BioC-5_at 1040.6 P 0.000081
AFFX-BioC-3_at 763.6 P 0.000297
AFFX-BioDn-5_at 684.1 P 0.000052
AFFX-BioDn-3_at 4273.1 P 0.00007
AFFX-CreX-5_at 7299.9 P 0.000044
AFFX-CreX-3_at 12788.3 P 0.000044
AFFX-BioB-5_st 57.6 A 0.165861
AFFX-BioB-M_st 35.5 A 0.440646
AFFX-BioB-3_st 16 A 0.760937
AFFX-BioC-5_st 8.6 A 0.891021
AFFX-BioC-3_st 3.7 A 0.783476
AFFX-BioDn-5_st 83.3 A 0.165861
AFFX-BioDn-3_st 101.4 A 0.078002

Total number of rows: 12488

Table truncated, full table size 313 Kbytes.




Supplementary file Size Download File type/resource
GSM9650.CEL.gz 2.7 Mb (ftp)(http) CEL

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