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Status
Public on Mar 08, 2006
Title
brain, Left Parietal Lobe: Extract39_le2
Sample type
RNA
Source name
brain, Left Parietal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left Parietal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
[email protected] Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
4233.5576
P
0.004484
AFFX-BioB-M_at
9652.669
P
0.000195
AFFX-BioB-3_at
3849.878
P
0.002867
AFFX-BioC-5_at
12984.447
P
0.002556
AFFX-BioC-3_at
9700.329
P
0.000195
AFFX-BioDn-5_at
7684.418
P
0.000081
AFFX-BioDn-3_at
65953.94
P
0.000127
AFFX-CreX-5_at
121618.305
P
0.000044
AFFX-CreX-3_at
184639.66
P
0.000044
AFFX-DapX-5_at
423.7658
A
0.275146
AFFX-DapX-M_at
352.2633
A
0.455413
AFFX-DapX-3_at
93.76208
A
0.932322
AFFX-LysX-5_at
210.91457
A
0.411380
AFFX-LysX-M_at
478.81302
A
0.440646
AFFX-LysX-3_at
52.995018
A
0.659339
AFFX-PheX-5_at
82.14312
A
0.843268
AFFX-PheX-M_at
62.39315
A
0.876428
AFFX-PheX-3_at
281.53207
A
0.737173
AFFX-ThrX-5_at
182.38803
A
0.617401
AFFX-ThrX-M_at
326.47372
A
0.470241
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99567.CEL.gz
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