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Sample GSM999412 Query DataSets for GSM999412
Status Public on Sep 07, 2012
Title HudsonAlpha_MethylArray_K562_Methyl27
Sample type genomic
 
Source name K562
Organism Homo sapiens
Characteristics lab: HudsonAlpha
lab description: Myers - Hudson Alpha Institute for Biotechnology
datatype: MethylArray
datatype description: DNA Methylation Array
cell: K562
cell organism: human
cell description: leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
labversion: Methyl27
obtainedby: HudsonAlpha
obtainedby description: Myers - Hudson Alpha Institute for Biotechnology
replicate: 3
Biomaterial provider ATCC
Treatment protocol None
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Label Cy3 or Cy5
Label protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
 
Hybridization protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Scan protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Description http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibMethylArray

Score in the bed files is beta value x 1000
 
Submission date Sep 07, 2012
Last update date Apr 23, 2013
Contact name ENCODE DCC
E-mail(s) [email protected]
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL8490
Series (1)
GSE40700 CpG Methylation by Illumina Methyl27 Bead Arrays from ENCODE/HAIB

Supplementary file Size Download File type/resource
GSM999412_hg19_wgEncodeHaibMethylArrayK562HaibSitesRep3.bed9.gz 487.6 Kb (ftp)(http) BED9
GSM999412_hg19_wgEncodeHaibMethylArrayK562HaibSitesRep4.bed.gz 490.8 Kb (ftp)(http) BED
GSM999412_hg19_wgEncodeHaibMethylArrayK562SitesRep1.bed.gz 468.0 Kb (ftp)(http) BED
GSM999412_hg19_wgEncodeHaibMethylArrayK562SitesRep2.bed.gz 469.2 Kb (ftp)(http) BED
Processed data provided as supplementary file
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