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Arabidopsis thaliana RHOMBOID-like protein 5 (RBL5), mRNA

NCBI Reference Sequence: NM_104136.3

FASTA Graphics 

LOCUS       NM_104136               1058 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RHOMBOID-like protein 5 (RBL5), mRNA.
ACCESSION   NM_104136
VERSION     NM_104136.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1058)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 1058)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1058)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1058)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 1058)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_104136.2.
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..1058
                     /gene="RBL5"
                     /locus_tag="AT1G52580"
                     /gene_synonym="ATRBL5; F6D8.20; F6D8_20; RHOMBOID-like
                     protein 5"
                     /db_xref="Araport:AT1G52580"
                     /db_xref="GeneID:841690"
                     /db_xref="TAIR:AT1G52580"
     CDS             35..964
                     /gene="RBL5"
                     /locus_tag="AT1G52580"
                     /gene_synonym="ATRBL5; F6D8.20; F6D8_20; RHOMBOID-like
                     protein 5"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES202923.1,INSD:DR370035.1,INSD:AI999721.1"
                     /note="RHOMBOID-like protein 5 (RBL5); FUNCTIONS IN:
                     serine-type endopeptidase activity; INVOLVED IN:
                     biological_process unknown; LOCATED IN: integral to
                     membrane; EXPRESSED IN: 9 plant structures; EXPRESSED
                     DURING: L mature pollen stage, M germinated pollen stage,
                     4 anthesis, C globular stage, petal differentiation and
                     expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase
                     S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis
                     thaliana protein match is: RHOMBOID-like 1
                     (TAIR:AT2G29050.1); Has 6054 Blast hits to 6053 proteins
                     in 1760 species: Archae - 140; Bacteria - 3757; Metazoa -
                     520; Fungi - 179; Plants - 346; Viruses - 0; Other
                     Eukaryotes - 1112 (source: NCBI BLink)."
                     /codon_start=1
                     /product="RHOMBOID-like protein 5"
                     /protein_id="NP_175667.1"
                     /db_xref="Araport:AT1G52580"
                     /db_xref="GeneID:841690"
                     /db_xref="TAIR:AT1G52580"
                     /translation="MGKRPPIPPDIENGPPPPARPHFRPPIPVPWVAWLVPLILAANF
                     VTFATTMYVNDCPARSDECLLFDVLGRLSFQPIKENMLLGPSIPTLRKLGALERRLVE
                     EGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISGLGGSLVS
                     CLTDSQGERVSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLILIIVLNLSVGF
                     LPRVDNSAHFGGFLAGFFLGFVLLLRPQYGYVNPKYIPPGYDMKHKKSKHKCYQHIFR
                     FTSLAILLAGFIAGYTKLLREHTIQSMPFRDFN"
ORIGIN      
        1 aacgagcaaa cgcgcgtgat actcttttcc agaaatgggg aagagaccgc cgattccacc
       61 agatatcgaa aacggaccac caccaccagc gcgaccacat tttcgcccgc ccattcccgt
      121 gccatgggtt gcgtggcttg tgcctctcat tttagcagcc aacttcgtca cattcgctac
      181 caccatgtat gtgaacgatt gccctgcaag atcagatgag tgtctcttat ttgatgtcct
      241 tggaaggctt tcgtttcaac cgattaagga gaatatgcta ctcggtcctt ctattcccac
      301 gctgagaaaa ctcggagctc tcgaaaggag acttgtggag gaaggtgaga gatggcgtct
      361 catctcttgc atatggcttc atggtggttt ccttcacttg atggctaaca tgatcagcct
      421 catgtgtatc ggaatgcgcc ttgaacaaga atttggattc atgagaatcg gagctttgta
      481 tgtgatctcc gggcttggag gaagcctggt gtcttgctta acagattccc aaggagaacg
      541 ggtatcagtc ggagcatctg gtgctttgtt cggattactc ggtgcaatgc tctcagagct
      601 catcacaaac tggacaatct atgaaaataa gtgcaccgca cttatgacat taatcctgat
      661 cattgtactg aatctaagcg tcggattctt accacgtgtg gacaattctg ctcattttgg
      721 aggattccta gctggtttct tcctcgggtt cgtccttctt ctccgtccgc agtacggata
      781 cgtgaaccca aaatacattc ctcctggtta tgacatgaaa cacaagaaat caaaacacaa
      841 gtgttatcaa cacatcttca gatttacatc tctagctatc cttcttgcgg gattcattgc
      901 gggatacact aagcttctta gagaacatac catacagagc atgccattca gagatttcaa
      961 ttagcagctt gtagccagca gaccagtgag acattctctg aaaaaagaca atttcacaca
     1021 atcccaagtt tttttccata tatataacac aaatatca
//
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Reference sequence information

More about the RBL5 gene

  • RBL5 gene
    Also Known As: AT1G52580, ATRBL5, F6D8...

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