LOCUS NM_104136 1058 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana RHOMBOID-like protein 5 (RBL5), mRNA.
ACCESSION NM_104136
VERSION NM_104136.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1058)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 1058)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1058)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1058)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 1058)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_104136.2.
FEATURES Location/Qualifiers
source 1..1058
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..1058
/gene="RBL5"
/locus_tag="AT1G52580"
/gene_synonym="ATRBL5; F6D8.20; F6D8_20; RHOMBOID-like
protein 5"
/db_xref="Araport:AT1G52580"
/db_xref="GeneID:841690"
/db_xref="TAIR:AT1G52580"
CDS 35..964
/gene="RBL5"
/locus_tag="AT1G52580"
/gene_synonym="ATRBL5; F6D8.20; F6D8_20; RHOMBOID-like
protein 5"
/inference="Similar to RNA sequence,
EST:INSD:ES202923.1,INSD:DR370035.1,INSD:AI999721.1"
/note="RHOMBOID-like protein 5 (RBL5); FUNCTIONS IN:
serine-type endopeptidase activity; INVOLVED IN:
biological_process unknown; LOCATED IN: integral to
membrane; EXPRESSED IN: 9 plant structures; EXPRESSED
DURING: L mature pollen stage, M germinated pollen stage,
4 anthesis, C globular stage, petal differentiation and
expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase
S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis
thaliana protein match is: RHOMBOID-like 1
(TAIR:AT2G29050.1); Has 6054 Blast hits to 6053 proteins
in 1760 species: Archae - 140; Bacteria - 3757; Metazoa -
520; Fungi - 179; Plants - 346; Viruses - 0; Other
Eukaryotes - 1112 (source: NCBI BLink)."
/codon_start=1
/product="RHOMBOID-like protein 5"
/protein_id="NP_175667.1"
/db_xref="Araport:AT1G52580"
/db_xref="GeneID:841690"
/db_xref="TAIR:AT1G52580"
/translation="MGKRPPIPPDIENGPPPPARPHFRPPIPVPWVAWLVPLILAANF
VTFATTMYVNDCPARSDECLLFDVLGRLSFQPIKENMLLGPSIPTLRKLGALERRLVE
EGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISGLGGSLVS
CLTDSQGERVSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLILIIVLNLSVGF
LPRVDNSAHFGGFLAGFFLGFVLLLRPQYGYVNPKYIPPGYDMKHKKSKHKCYQHIFR
FTSLAILLAGFIAGYTKLLREHTIQSMPFRDFN"
ORIGIN
1 aacgagcaaa cgcgcgtgat actcttttcc agaaatgggg aagagaccgc cgattccacc
61 agatatcgaa aacggaccac caccaccagc gcgaccacat tttcgcccgc ccattcccgt
121 gccatgggtt gcgtggcttg tgcctctcat tttagcagcc aacttcgtca cattcgctac
181 caccatgtat gtgaacgatt gccctgcaag atcagatgag tgtctcttat ttgatgtcct
241 tggaaggctt tcgtttcaac cgattaagga gaatatgcta ctcggtcctt ctattcccac
301 gctgagaaaa ctcggagctc tcgaaaggag acttgtggag gaaggtgaga gatggcgtct
361 catctcttgc atatggcttc atggtggttt ccttcacttg atggctaaca tgatcagcct
421 catgtgtatc ggaatgcgcc ttgaacaaga atttggattc atgagaatcg gagctttgta
481 tgtgatctcc gggcttggag gaagcctggt gtcttgctta acagattccc aaggagaacg
541 ggtatcagtc ggagcatctg gtgctttgtt cggattactc ggtgcaatgc tctcagagct
601 catcacaaac tggacaatct atgaaaataa gtgcaccgca cttatgacat taatcctgat
661 cattgtactg aatctaagcg tcggattctt accacgtgtg gacaattctg ctcattttgg
721 aggattccta gctggtttct tcctcgggtt cgtccttctt ctccgtccgc agtacggata
781 cgtgaaccca aaatacattc ctcctggtta tgacatgaaa cacaagaaat caaaacacaa
841 gtgttatcaa cacatcttca gatttacatc tctagctatc cttcttgcgg gattcattgc
901 gggatacact aagcttctta gagaacatac catacagagc atgccattca gagatttcaa
961 ttagcagctt gtagccagca gaccagtgag acattctctg aaaaaagaca atttcacaca
1021 atcccaagtt tttttccata tatataacac aaatatca
//