LOCUS NM_105696 2145 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana NHL domain-containing protein (AT1G70280),
mRNA.
ACCESSION NM_105696
VERSION NM_105696.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2145)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 2145)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2145)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2145)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 2145)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
On Sep 12, 2016 this sequence version replaced NM_105696.3.
FEATURES Location/Qualifiers
source 1..2145
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..2145
/locus_tag="AT1G70280"
/gene_synonym="F17O7.19; F17O7_19"
/db_xref="Araport:AT1G70280"
/db_xref="GeneID:843364"
/db_xref="TAIR:AT1G70280"
CDS 334..1863
/locus_tag="AT1G70280"
/gene_synonym="F17O7.19; F17O7_19"
/inference="Similar to RNA sequence,
EST:INSD:F14403.1,INSD:ES001706.1,INSD:BP591029.1,
INSD:EL141383.1,INSD:BP782065.1,INSD:EL076218.1,
INSD:ES079611.1,INSD:DR353192.1,INSD:AV526248.1,
INSD:BX835430.1,INSD:BX839098.1,INSD:EH833166.1,
INSD:AV567651.1,INSD:AV520136.1,INSD:EH855083.1,
INSD:F14404.1,INSD:AI993734.1,INSD:EH951949.1,
INSD:ES176135.1,INSD:EH978440.1,INSD:EL306541.1,
INSD:N96730.1,INSD:BP662070.1,INSD:AV530427.1,
INSD:BP590824.1,INSD:EL161785.1,INSD:EH936151.1,
INSD:EL177329.1,INSD:EL312972.1,INSD:BP568618.1,
INSD:EL331944.1,INSD:AV519415.1,INSD:AV795969.1,
INSD:EH944581.1,INSD:BP581946.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX816509.1,INSD:AY114666.1,INSD:BX818130.1"
/note="NHL domain-containing protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL
repeat (InterPro:IPR001258), Six-bladed beta-propeller,
TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana
protein match is: NHL domain-containing protein
(TAIR:AT1G23880.1); Has 7202 Blast hits to 4120 proteins
in 426 species: Archae - 63; Bacteria - 1459; Metazoa -
1476; Fungi - 468; Plants - 264; Viruses - 2; Other
Eukaryotes - 3470 (source: NCBI BLink)."
/codon_start=1
/product="NHL domain-containing protein"
/protein_id="NP_177185.3"
/db_xref="Araport:AT1G70280"
/db_xref="GeneID:843364"
/db_xref="TAIR:AT1G70280"
/translation="MGRDFLVLSILILLLSGIVSSAPSANSPAKILNGFISNHGSSLM
KWLWSLKTTTKTTIATRSMVKFENGYSVETVFDGSKLGIEPYSIEVLPNGELLILDSE
NSNIYKISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDAKLNHPKGLTVDDRGNIYVAD
TVNNAIRKISEGGVTTIAGGKTVRNGGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR
GNKAIREIQLHFDDCAYQYGSGFPLGIAVLVAAGFFGYMLALLQRRVGSIVSSHNDQE
MFEADPDQKPMKHSRPSLIPAGDEQLEKQEETFVVSLGKLVSNAWESVMEILRKKQTG
TSFQQYHGTTKQSAAFSTSTPWPIQESFVIRDEDGPPPVEPRNPTPRKTYAFMSKDAE
KMQQLRQSRAFYSSWDAEFPNQQQQQQKQHQKHQHQQQQQQQHRRHYSSIPHTYYEQD
SEKSNEIVFGAVQEQSSKRVAKPKPKPIESGDQMNNNTQQNLHYRSHSVSYPYGYYPN
T"
ORIGIN
1 aaaaaaagta acgacgttga tcgcatcaca tgactctctc tctcactctt tttattctgt
61 ctccttctaa ataaaaactt tccccttcct cttttctcac tgagacactg tcttcactct
121 tttttgctta tcaacaaact ctgcacaaat cttaacctct ctgtttcttc tctttaattc
181 tctctttcat cgaaagaaac ctcaaatttc aaatcttcgc attgtccgcc attcttatac
241 ttcccctaga gaagcttctt agggttctta gtttcttcct ctgccgcgtc ttctcaagtt
301 taaaacttgt ctcttcttct tcaaatccaa tcaatgggta gagattttct agttctaagt
361 attctcattc tacttctctc tgggattgta tcttcagctc cttcagctaa ttctcctgca
421 aagattctta atgggtttat ctcaaatcat ggctcttcac taatgaaatg gttatggtca
481 ctcaaaacca caaccaaaac aactattgca acgagatcga tggtgaaatt cgaaaatggg
541 tatagtgtag agactgtgtt tgatggaagt aaacttggta ttgaaccgta ttctattgaa
601 gtcttaccaa acggagagtt acttattctt gattctgaga acagtaacat ctacaagatc
661 tcatcttctc tttcattata tagcaggcca agactggtta ctggctcccc tgaaggatat
721 ccaggtcatg ttgacgggag attacgtgat gcgaagctga accatcctaa ggggcttacg
781 gttgatgaca gaggaaatat atatgtggct gatactgtga ataatgctat ccggaagata
841 agtgaaggag gagttacaac tattgccggg ggcaaaacgg ttcgaaatgg agggcatgtg
901 gatggaccaa gtgaagatgc aaagttttca aatgattttg atgttgttta tgttggaagt
961 agttgttctc tgcttgttat tgaccgtgga aacaaagcta tcagagagat tcaactccat
1021 ttcgatgact gtgcttatca gtatggaagc gggtttcctc ttgggattgc tgttcttgtt
1081 gctgcaggtt tctttggtta tatgctagct ctgttgcaac gaagagtcgg ctctatcgtg
1141 tcttctcata atgatcaaga aatgttcgaa gctgatcctg atcaaaagcc tatgaaacat
1201 tccagaccat ctctgattcc ggctggagac gagcagctag agaaacaaga ggaaacattt
1261 gtggtatcgc tgggaaaact cgtttcaaat gcttgggagt cagttatgga gatccttaga
1321 aaaaagcaga caggcaccag ctttcagcag taccatggga caacaaagca gtctgctgca
1381 tttagcacat caactccatg gccaattcaa gagagctttg tgattcgaga cgaagacgga
1441 cctcctcctg ttgagcccag gaacccaact ccaagaaaga cttatgcttt tatgtccaaa
1501 gatgcagaga aaatgcagca gctacgtcag agccgcgcat tctacagtag ctgggacgct
1561 gagttcccca accagcagca acagcagcaa aagcagcacc agaagcatca gcatcagcaa
1621 caacagcagc agcagcatcg aaggcattac tcatcgatcc cgcatactta ttatgagcag
1681 gacagtgaaa agtctaatga gatagtcttt ggagcggtcc aagaacagag cagcaagcgt
1741 gtggctaagc ctaagccgaa gcctatagag tctggagatc aaatgaataa taatactcaa
1801 cagaatcttc actacagatc tcattctgtt agttacccat atggatacta tcctaataca
1861 tgaaaagtct ccggttttgt gcgtttctga gattatcagt cttccttaat aagattatgc
1921 agggaattaa attttttggg tataggtgtt tgtattgggg aattttaaga gtatgctctc
1981 gtcttatgag aaatgtctca tactttgatt gtattgggta atatatatat gaaaaaatga
2041 tatgattatc tttgtgaaaa aagtgattat gtacattccc ttgagcttgt tacagcattg
2101 ttaaataagt gtccaacata aggtttctca tttactagat tcata
//