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Arabidopsis thaliana NHL domain-containing protein (AT1G70280), mRNA

NCBI Reference Sequence: NM_105696.4

FASTA Graphics 

LOCUS       NM_105696               2145 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana NHL domain-containing protein (AT1G70280),
            mRNA.
ACCESSION   NM_105696
VERSION     NM_105696.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2145)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 2145)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2145)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2145)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 2145)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
            
            On Sep 12, 2016 this sequence version replaced NM_105696.3.
FEATURES             Location/Qualifiers
     source          1..2145
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..2145
                     /locus_tag="AT1G70280"
                     /gene_synonym="F17O7.19; F17O7_19"
                     /db_xref="Araport:AT1G70280"
                     /db_xref="GeneID:843364"
                     /db_xref="TAIR:AT1G70280"
     CDS             334..1863
                     /locus_tag="AT1G70280"
                     /gene_synonym="F17O7.19; F17O7_19"
                     /inference="Similar to RNA sequence,
                     EST:INSD:F14403.1,INSD:ES001706.1,INSD:BP591029.1,
                     INSD:EL141383.1,INSD:BP782065.1,INSD:EL076218.1,
                     INSD:ES079611.1,INSD:DR353192.1,INSD:AV526248.1,
                     INSD:BX835430.1,INSD:BX839098.1,INSD:EH833166.1,
                     INSD:AV567651.1,INSD:AV520136.1,INSD:EH855083.1,
                     INSD:F14404.1,INSD:AI993734.1,INSD:EH951949.1,
                     INSD:ES176135.1,INSD:EH978440.1,INSD:EL306541.1,
                     INSD:N96730.1,INSD:BP662070.1,INSD:AV530427.1,
                     INSD:BP590824.1,INSD:EL161785.1,INSD:EH936151.1,
                     INSD:EL177329.1,INSD:EL312972.1,INSD:BP568618.1,
                     INSD:EL331944.1,INSD:AV519415.1,INSD:AV795969.1,
                     INSD:EH944581.1,INSD:BP581946.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX816509.1,INSD:AY114666.1,INSD:BX818130.1"
                     /note="NHL domain-containing protein; FUNCTIONS IN:
                     molecular_function unknown; INVOLVED IN:
                     biological_process unknown; LOCATED IN: endomembrane
                     system; EXPRESSED IN: 22 plant structures; EXPRESSED
                     DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NHL
                     repeat (InterPro:IPR001258), Six-bladed beta-propeller,
                     TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana
                     protein match is: NHL domain-containing protein
                     (TAIR:AT1G23880.1); Has 7202 Blast hits to 4120 proteins
                     in 426 species: Archae - 63; Bacteria - 1459; Metazoa -
                     1476; Fungi - 468; Plants - 264; Viruses - 2; Other
                     Eukaryotes - 3470 (source: NCBI BLink)."
                     /codon_start=1
                     /product="NHL domain-containing protein"
                     /protein_id="NP_177185.3"
                     /db_xref="Araport:AT1G70280"
                     /db_xref="GeneID:843364"
                     /db_xref="TAIR:AT1G70280"
                     /translation="MGRDFLVLSILILLLSGIVSSAPSANSPAKILNGFISNHGSSLM
                     KWLWSLKTTTKTTIATRSMVKFENGYSVETVFDGSKLGIEPYSIEVLPNGELLILDSE
                     NSNIYKISSSLSLYSRPRLVTGSPEGYPGHVDGRLRDAKLNHPKGLTVDDRGNIYVAD
                     TVNNAIRKISEGGVTTIAGGKTVRNGGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDR
                     GNKAIREIQLHFDDCAYQYGSGFPLGIAVLVAAGFFGYMLALLQRRVGSIVSSHNDQE
                     MFEADPDQKPMKHSRPSLIPAGDEQLEKQEETFVVSLGKLVSNAWESVMEILRKKQTG
                     TSFQQYHGTTKQSAAFSTSTPWPIQESFVIRDEDGPPPVEPRNPTPRKTYAFMSKDAE
                     KMQQLRQSRAFYSSWDAEFPNQQQQQQKQHQKHQHQQQQQQQHRRHYSSIPHTYYEQD
                     SEKSNEIVFGAVQEQSSKRVAKPKPKPIESGDQMNNNTQQNLHYRSHSVSYPYGYYPN
                     T"
ORIGIN      
        1 aaaaaaagta acgacgttga tcgcatcaca tgactctctc tctcactctt tttattctgt
       61 ctccttctaa ataaaaactt tccccttcct cttttctcac tgagacactg tcttcactct
      121 tttttgctta tcaacaaact ctgcacaaat cttaacctct ctgtttcttc tctttaattc
      181 tctctttcat cgaaagaaac ctcaaatttc aaatcttcgc attgtccgcc attcttatac
      241 ttcccctaga gaagcttctt agggttctta gtttcttcct ctgccgcgtc ttctcaagtt
      301 taaaacttgt ctcttcttct tcaaatccaa tcaatgggta gagattttct agttctaagt
      361 attctcattc tacttctctc tgggattgta tcttcagctc cttcagctaa ttctcctgca
      421 aagattctta atgggtttat ctcaaatcat ggctcttcac taatgaaatg gttatggtca
      481 ctcaaaacca caaccaaaac aactattgca acgagatcga tggtgaaatt cgaaaatggg
      541 tatagtgtag agactgtgtt tgatggaagt aaacttggta ttgaaccgta ttctattgaa
      601 gtcttaccaa acggagagtt acttattctt gattctgaga acagtaacat ctacaagatc
      661 tcatcttctc tttcattata tagcaggcca agactggtta ctggctcccc tgaaggatat
      721 ccaggtcatg ttgacgggag attacgtgat gcgaagctga accatcctaa ggggcttacg
      781 gttgatgaca gaggaaatat atatgtggct gatactgtga ataatgctat ccggaagata
      841 agtgaaggag gagttacaac tattgccggg ggcaaaacgg ttcgaaatgg agggcatgtg
      901 gatggaccaa gtgaagatgc aaagttttca aatgattttg atgttgttta tgttggaagt
      961 agttgttctc tgcttgttat tgaccgtgga aacaaagcta tcagagagat tcaactccat
     1021 ttcgatgact gtgcttatca gtatggaagc gggtttcctc ttgggattgc tgttcttgtt
     1081 gctgcaggtt tctttggtta tatgctagct ctgttgcaac gaagagtcgg ctctatcgtg
     1141 tcttctcata atgatcaaga aatgttcgaa gctgatcctg atcaaaagcc tatgaaacat
     1201 tccagaccat ctctgattcc ggctggagac gagcagctag agaaacaaga ggaaacattt
     1261 gtggtatcgc tgggaaaact cgtttcaaat gcttgggagt cagttatgga gatccttaga
     1321 aaaaagcaga caggcaccag ctttcagcag taccatggga caacaaagca gtctgctgca
     1381 tttagcacat caactccatg gccaattcaa gagagctttg tgattcgaga cgaagacgga
     1441 cctcctcctg ttgagcccag gaacccaact ccaagaaaga cttatgcttt tatgtccaaa
     1501 gatgcagaga aaatgcagca gctacgtcag agccgcgcat tctacagtag ctgggacgct
     1561 gagttcccca accagcagca acagcagcaa aagcagcacc agaagcatca gcatcagcaa
     1621 caacagcagc agcagcatcg aaggcattac tcatcgatcc cgcatactta ttatgagcag
     1681 gacagtgaaa agtctaatga gatagtcttt ggagcggtcc aagaacagag cagcaagcgt
     1741 gtggctaagc ctaagccgaa gcctatagag tctggagatc aaatgaataa taatactcaa
     1801 cagaatcttc actacagatc tcattctgtt agttacccat atggatacta tcctaataca
     1861 tgaaaagtct ccggttttgt gcgtttctga gattatcagt cttccttaat aagattatgc
     1921 agggaattaa attttttggg tataggtgtt tgtattgggg aattttaaga gtatgctctc
     1981 gtcttatgag aaatgtctca tactttgatt gtattgggta atatatatat gaaaaaatga
     2041 tatgattatc tttgtgaaaa aagtgattat gtacattccc ttgagcttgt tacagcattg
     2101 ttaaataagt gtccaacata aggtttctca tttactagat tcata
//
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