LOCUS NM_113429 2310 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana rotamase FKBP 1 (ROF1), mRNA.
ACCESSION NM_113429
VERSION NM_113429.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2310)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 2310)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2310)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2310)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Sep 12, 2016 this sequence version replaced NM_113429.4.
FEATURES Location/Qualifiers
source 1..2310
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..2310
/gene="ROF1"
/locus_tag="AT3G25230"
/gene_synonym="ATFKBP62; FK506 BINDING PROTEIN 62; FKBP62;
rotamase FKBP 1"
/note="Encodes a a high molecular weight member of the
FK506 binding protein (FKBP) family. It has three
FKBP12-like domains, tetratricopeptide repeats, and a
putative calmodulin binding domain. Modulates
thermotolerance by interacting with HSP90.1 and affecting
the accumulation of HsfA2-regulated sHSPs. Belongs to one
of the 36 carboxylate clamp (CC)-tetratricopeptide repeat
(TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with
potential to interact with Hsp90/Hsp70 as co-chaperones."
/db_xref="Araport:AT3G25230"
/db_xref="GeneID:822117"
/db_xref="TAIR:AT3G25230"
CDS 162..1817
/gene="ROF1"
/locus_tag="AT3G25230"
/gene_synonym="ATFKBP62; FK506 BINDING PROTEIN 62; FKBP62;
rotamase FKBP 1"
/inference="Similar to RNA sequence,
EST:INSD:AV565013.1,INSD:BP784627.1,INSD:DR383769.1,
INSD:BP793831.1,INSD:CF652613.1,INSD:DR366109.1,
INSD:EG517795.1,INSD:EL189122.1,INSD:EL039485.1,
INSD:AV823906.1,INSD:ES210779.1,INSD:EG512571.1,
INSD:AV548478.1,INSD:ES209169.1,INSD:EH803360.1,
INSD:EL989495.1,INSD:ES005836.1,INSD:ES167448.1,
INSD:EL074393.1,INSD:EG503222.1,INSD:ES043786.1,
INSD:EL202924.1,INSD:ES090980.1,INSD:EG477591.1,
INSD:ES098235.1,INSD:AV810878.1,INSD:ES030428.1,
INSD:BP636002.1,INSD:BP778332.1,INSD:ES089645.1,
INSD:EG503838.1,INSD:EG517794.1,INSD:BP629504.1,
INSD:ES072554.1,INSD:ES093802.1,INSD:CK118086.1,
INSD:EG435974.1,INSD:AI993332.1,INSD:EL151478.1,
INSD:EG527367.1,INSD:EG503221.1,INSD:AV784988.1,
INSD:ES127318.1,INSD:ES027956.1,INSD:BP862633.1,
INSD:EL277158.1,INSD:EG499289.1,INSD:EG499290.1,
INSD:EH811623.1,INSD:EL204172.1,INSD:EL162025.1,
INSD:AV546281.1,INSD:BP819176.1,INSD:ES050537.1,
INSD:DR366111.1,INSD:ES085740.1,INSD:EG527356.1,
INSD:ES198248.1,INSD:ES095364.1,INSD:ES044399.1,
INSD:AV799737.1,INSD:EH820726.1,INSD:BP604817.1,
INSD:EL322288.1,INSD:BP615882.1,INSD:CB074861.1,
INSD:BP787712.1,INSD:EL135958.1,INSD:T76661.1"
/inference="Similar to RNA sequence, mRNA:INSD:U49453.1"
/note="rotamase FKBP 1 (ROF1); FUNCTIONS IN: FK506
binding, peptidyl-prolyl cis-trans isomerase activity,
calmodulin binding; INVOLVED IN: response to cadmium ion,
response to heat, response to wounding; LOCATED IN:
nucleus, cytoplasm; EXPRESSED IN: 26 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440),
Tetratricopeptide-like helical (InterPro:IPR011990),
Tetratricopeptide repeat-containing (InterPro:IPR013026),
Tetratricopeptide repeat (InterPro:IPR019734),
Peptidyl-prolyl cis-trans isomerase, FKBP-type
(InterPro:IPR001179); BEST Arabidopsis thaliana protein
match is: FKBP-type peptidyl-prolyl cis-trans isomerase
family protein (TAIR:AT5G48570.1); Has 23486 Blast hits to
15115 proteins in 1840 species: Archae - 212; Bacteria -
9362; Metazoa - 6200; Fungi - 1716; Plants - 1995; Viruses
- 0; Other Eukaryotes - 4001 (source: NCBI BLink)."
/codon_start=1
/product="rotamase FKBP 1"
/protein_id="NP_189160.3"
/db_xref="GeneID:822117"
/db_xref="TAIR:AT3G25230"
/db_xref="Araport:AT3G25230"
/translation="MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEIQQGLKKKL
LKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIK
TMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKI
LAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKK
GEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKK
VLKEGDGYERPNEGAVVKVKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDR
AVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERESWDMN
TEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKALKVA
CNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKK
ALEIDPNNREVKLEQKRLKEKMKEFNKKEAKFYGNMFAKLSKE"
ORIGIN
1 aatttacgag tgacggatca tctgtgttct cgaaccatct ttttaacgaa ctctctagaa
61 ccctttttct ttttcaccca aaacccaacc tcgtataaat ctcaccaatc catttcttct
121 cttcttcttt gcgttttttg tttggaactg aatcgaaaaa gatggatgct aatttcgaga
181 tgcctccagt cggtggaatg aacgacgacg acgacatgga tttcggtgac ggcgcctcgt
241 ttcttaaagt cggtgaagag aaagagatcc aacaaggttt gaagaagaag cttcttaaag
301 aaggtgaagg atatgaaact cctgagaatg gcgatgaagt tgaagtgcat tacactggaa
361 ctttgcttga tgggacgaag tttgattcga gtcgtgatag agcaacgcct ttcaaattca
421 ctcttggaca aggtcaagtt attaaaggat gggatattgg tattaagacg atgaagaaag
481 gtgaaaacgc tgttttcact atacctgcgg agctagcata tggggaatct ggttccccgc
541 caactattcc tgcgaatgct acgcttcagt ttgatgtgga gttgcttaaa tgggacagtg
601 tgaaggatat atgtaaagat ggtggtgtgt ttaagaagat tcttgctgtt ggagagaagt
661 gggagaatcc aaaggacctt gatgaagttc ttgttaagtt tgaggcgaaa cttgaggatg
721 gtactgttgt tgggaaatct gatggtgtgg agttcactgt taaagatggt catttctgcc
781 ctgcacttac taaggctgtg aaaactatga aaaagggtga aaaggtcctt ctgacagtta
841 aaccacaata tggttttggg gagaagggca agccagcctc tgctggtgaa ggcgcggttc
901 ctcctaatgc gacgctcgag atcaatttgg agttagtttc gtggaaaaca gtgtcagaag
961 taactgatga taacaaggtt gtgaagaaag tcttgaagga aggggatgga tatgagcgtc
1021 ctaacgaggg ggcagttgtg aaagtgaaat tgatagggaa acttcaagat ggtactgtat
1081 ttttgaagaa aggtcatggt gagaatgagg aaccgtttga gttcaaaaca gatgaagagc
1141 aagttgtcga tggacttgat agagctgtca tgaagatgaa aaagggtgaa gtggcattgg
1201 tgaccataga ccctgagtat gcctttggtt ctaatgagtc acaacaggaa ttggctgtgg
1261 tgccgccaaa ctcaactgtt acttatgagg ttgacctatt gactttcgac aaggaaaggg
1321 aatcgtggga catgaacact gaggagaaga ttgaagctgc tagtaagaag aaggaagaag
1381 gaaattccaa gtttaaagga ggcaaatatt ccctggcttc caagagatat gagaaggctg
1441 tcaaattcat tgaatacgac acatccttca gtgaggaaga gaagaagcaa gcaaaagcat
1501 tgaaggtggc atgcaatcta aacgatgcag cctgcaaact caaattgaaa gattacaagc
1561 aggccgaaaa actatgcaca aaggtgttag agctagaaag caccaatgtg aaggccttat
1621 accggagagc gcaagcgtac atggagttgt ctgatttaga cttggccgag tttgatgtca
1681 agaaggccct tgaaatcgat cccaacaaca gggaagtgaa gctagagcag aaaaggttga
1741 aggagaaaat gaaggaattc aataaaaagg aagccaaatt ttatggaaac atgtttgcga
1801 aactaagtaa ggaataatca aaagatggag aggcaatgag cacctgaggt cttgaaaacg
1861 ttgcaagaac tctgcatttt tcattttcta ctcttttggt ttgttgcaat gttttctagt
1921 ttttcaacct gagcgttagt gagacactaa gacttataaa acagtgagag attatcccaa
1981 tgtgttgctt ttttcgtctg attgttggta gaaacttgga gctattgata gcaaaaaaaa
2041 cctaactttc cagattaatt tgagttctta atatgatatc gagacaaaat agttgcttgt
2101 gccgttgtgt tggacctttg gtggacttat accaccggga tgaatcataa accactgatt
2161 cgcaattacg gctaattcta ctggtttcaa cgtgcagcaa ataatcaatc acaactagat
2221 catctttagt ggtacgcgta gagtgtattt cacactccaa caaattttta agagctctac
2281 gaatgtgcac aaggctttat tgattattgc
//