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Arabidopsis thaliana rotamase FKBP 1 (ROF1), mRNA

NCBI Reference Sequence: NM_113429.5

FASTA Graphics 

LOCUS       NM_113429               2310 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana rotamase FKBP 1 (ROF1), mRNA.
ACCESSION   NM_113429
VERSION     NM_113429.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 2310)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2310)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2310)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_113429.4.
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..2310
                     /gene="ROF1"
                     /locus_tag="AT3G25230"
                     /gene_synonym="ATFKBP62; FK506 BINDING PROTEIN 62; FKBP62;
                     rotamase FKBP 1"
                     /note="Encodes a a high molecular weight member of the
                     FK506 binding protein (FKBP) family. It has three
                     FKBP12-like domains, tetratricopeptide repeats, and a
                     putative calmodulin binding domain. Modulates
                     thermotolerance by interacting with HSP90.1 and affecting
                     the accumulation of HsfA2-regulated sHSPs. Belongs to one
                     of the 36 carboxylate clamp (CC)-tetratricopeptide repeat
                     (TPR) proteins (Prasad 2010, Pubmed ID: 20856808) with
                     potential to interact with Hsp90/Hsp70 as co-chaperones."
                     /db_xref="Araport:AT3G25230"
                     /db_xref="GeneID:822117"
                     /db_xref="TAIR:AT3G25230"
     CDS             162..1817
                     /gene="ROF1"
                     /locus_tag="AT3G25230"
                     /gene_synonym="ATFKBP62; FK506 BINDING PROTEIN 62; FKBP62;
                     rotamase FKBP 1"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AV565013.1,INSD:BP784627.1,INSD:DR383769.1,
                     INSD:BP793831.1,INSD:CF652613.1,INSD:DR366109.1,
                     INSD:EG517795.1,INSD:EL189122.1,INSD:EL039485.1,
                     INSD:AV823906.1,INSD:ES210779.1,INSD:EG512571.1,
                     INSD:AV548478.1,INSD:ES209169.1,INSD:EH803360.1,
                     INSD:EL989495.1,INSD:ES005836.1,INSD:ES167448.1,
                     INSD:EL074393.1,INSD:EG503222.1,INSD:ES043786.1,
                     INSD:EL202924.1,INSD:ES090980.1,INSD:EG477591.1,
                     INSD:ES098235.1,INSD:AV810878.1,INSD:ES030428.1,
                     INSD:BP636002.1,INSD:BP778332.1,INSD:ES089645.1,
                     INSD:EG503838.1,INSD:EG517794.1,INSD:BP629504.1,
                     INSD:ES072554.1,INSD:ES093802.1,INSD:CK118086.1,
                     INSD:EG435974.1,INSD:AI993332.1,INSD:EL151478.1,
                     INSD:EG527367.1,INSD:EG503221.1,INSD:AV784988.1,
                     INSD:ES127318.1,INSD:ES027956.1,INSD:BP862633.1,
                     INSD:EL277158.1,INSD:EG499289.1,INSD:EG499290.1,
                     INSD:EH811623.1,INSD:EL204172.1,INSD:EL162025.1,
                     INSD:AV546281.1,INSD:BP819176.1,INSD:ES050537.1,
                     INSD:DR366111.1,INSD:ES085740.1,INSD:EG527356.1,
                     INSD:ES198248.1,INSD:ES095364.1,INSD:ES044399.1,
                     INSD:AV799737.1,INSD:EH820726.1,INSD:BP604817.1,
                     INSD:EL322288.1,INSD:BP615882.1,INSD:CB074861.1,
                     INSD:BP787712.1,INSD:EL135958.1,INSD:T76661.1"
                     /inference="Similar to RNA sequence, mRNA:INSD:U49453.1"
                     /note="rotamase FKBP 1 (ROF1); FUNCTIONS IN: FK506
                     binding, peptidyl-prolyl cis-trans isomerase activity,
                     calmodulin binding; INVOLVED IN: response to cadmium ion,
                     response to heat, response to wounding; LOCATED IN:
                     nucleus, cytoplasm; EXPRESSED IN: 26 plant structures;
                     EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
                     DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440),
                     Tetratricopeptide-like helical (InterPro:IPR011990),
                     Tetratricopeptide repeat-containing (InterPro:IPR013026),
                     Tetratricopeptide repeat (InterPro:IPR019734),
                     Peptidyl-prolyl cis-trans isomerase, FKBP-type
                     (InterPro:IPR001179); BEST Arabidopsis thaliana protein
                     match is: FKBP-type peptidyl-prolyl cis-trans isomerase
                     family protein (TAIR:AT5G48570.1); Has 23486 Blast hits to
                     15115 proteins in 1840 species: Archae - 212; Bacteria -
                     9362; Metazoa - 6200; Fungi - 1716; Plants - 1995; Viruses
                     - 0; Other Eukaryotes - 4001 (source: NCBI BLink)."
                     /codon_start=1
                     /product="rotamase FKBP 1"
                     /protein_id="NP_189160.3"
                     /db_xref="GeneID:822117"
                     /db_xref="TAIR:AT3G25230"
                     /db_xref="Araport:AT3G25230"
                     /translation="MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEIQQGLKKKL
                     LKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIK
                     TMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKI
                     LAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKK
                     GEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKK
                     VLKEGDGYERPNEGAVVKVKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDR
                     AVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERESWDMN
                     TEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAKALKVA
                     CNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFDVKK
                     ALEIDPNNREVKLEQKRLKEKMKEFNKKEAKFYGNMFAKLSKE"
ORIGIN      
        1 aatttacgag tgacggatca tctgtgttct cgaaccatct ttttaacgaa ctctctagaa
       61 ccctttttct ttttcaccca aaacccaacc tcgtataaat ctcaccaatc catttcttct
      121 cttcttcttt gcgttttttg tttggaactg aatcgaaaaa gatggatgct aatttcgaga
      181 tgcctccagt cggtggaatg aacgacgacg acgacatgga tttcggtgac ggcgcctcgt
      241 ttcttaaagt cggtgaagag aaagagatcc aacaaggttt gaagaagaag cttcttaaag
      301 aaggtgaagg atatgaaact cctgagaatg gcgatgaagt tgaagtgcat tacactggaa
      361 ctttgcttga tgggacgaag tttgattcga gtcgtgatag agcaacgcct ttcaaattca
      421 ctcttggaca aggtcaagtt attaaaggat gggatattgg tattaagacg atgaagaaag
      481 gtgaaaacgc tgttttcact atacctgcgg agctagcata tggggaatct ggttccccgc
      541 caactattcc tgcgaatgct acgcttcagt ttgatgtgga gttgcttaaa tgggacagtg
      601 tgaaggatat atgtaaagat ggtggtgtgt ttaagaagat tcttgctgtt ggagagaagt
      661 gggagaatcc aaaggacctt gatgaagttc ttgttaagtt tgaggcgaaa cttgaggatg
      721 gtactgttgt tgggaaatct gatggtgtgg agttcactgt taaagatggt catttctgcc
      781 ctgcacttac taaggctgtg aaaactatga aaaagggtga aaaggtcctt ctgacagtta
      841 aaccacaata tggttttggg gagaagggca agccagcctc tgctggtgaa ggcgcggttc
      901 ctcctaatgc gacgctcgag atcaatttgg agttagtttc gtggaaaaca gtgtcagaag
      961 taactgatga taacaaggtt gtgaagaaag tcttgaagga aggggatgga tatgagcgtc
     1021 ctaacgaggg ggcagttgtg aaagtgaaat tgatagggaa acttcaagat ggtactgtat
     1081 ttttgaagaa aggtcatggt gagaatgagg aaccgtttga gttcaaaaca gatgaagagc
     1141 aagttgtcga tggacttgat agagctgtca tgaagatgaa aaagggtgaa gtggcattgg
     1201 tgaccataga ccctgagtat gcctttggtt ctaatgagtc acaacaggaa ttggctgtgg
     1261 tgccgccaaa ctcaactgtt acttatgagg ttgacctatt gactttcgac aaggaaaggg
     1321 aatcgtggga catgaacact gaggagaaga ttgaagctgc tagtaagaag aaggaagaag
     1381 gaaattccaa gtttaaagga ggcaaatatt ccctggcttc caagagatat gagaaggctg
     1441 tcaaattcat tgaatacgac acatccttca gtgaggaaga gaagaagcaa gcaaaagcat
     1501 tgaaggtggc atgcaatcta aacgatgcag cctgcaaact caaattgaaa gattacaagc
     1561 aggccgaaaa actatgcaca aaggtgttag agctagaaag caccaatgtg aaggccttat
     1621 accggagagc gcaagcgtac atggagttgt ctgatttaga cttggccgag tttgatgtca
     1681 agaaggccct tgaaatcgat cccaacaaca gggaagtgaa gctagagcag aaaaggttga
     1741 aggagaaaat gaaggaattc aataaaaagg aagccaaatt ttatggaaac atgtttgcga
     1801 aactaagtaa ggaataatca aaagatggag aggcaatgag cacctgaggt cttgaaaacg
     1861 ttgcaagaac tctgcatttt tcattttcta ctcttttggt ttgttgcaat gttttctagt
     1921 ttttcaacct gagcgttagt gagacactaa gacttataaa acagtgagag attatcccaa
     1981 tgtgttgctt ttttcgtctg attgttggta gaaacttgga gctattgata gcaaaaaaaa
     2041 cctaactttc cagattaatt tgagttctta atatgatatc gagacaaaat agttgcttgt
     2101 gccgttgtgt tggacctttg gtggacttat accaccggga tgaatcataa accactgatt
     2161 cgcaattacg gctaattcta ctggtttcaa cgtgcagcaa ataatcaatc acaactagat
     2221 catctttagt ggtacgcgta gagtgtattt cacactccaa caaattttta agagctctac
     2281 gaatgtgcac aaggctttat tgattattgc
//
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