LOCUS BC117068 1025 bp mRNA linear ROD 18-MAR-2009
DEFINITION Mus musculus TATA box binding protein (Tbp)-associated factor, RNA
polymerase I, D, mRNA (cDNA clone MGC:151445 IMAGE:40126387),
complete cds.
ACCESSION BC117068
VERSION BC117068.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1025)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1025)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAY-2006) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Ambion
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRCK Plate: 1 Row: O Column: 4.
FEATURES Location/Qualifiers
source 1..1025
/organism="Mus musculus"
/mol_type="mRNA"
/db_xref="taxon:10090"
/clone="MGC:151445 IMAGE:40126387"
/tissue_type="Brain, PCR rescued clones"
/clone_lib="NIH_MGC_378"
/lab_host="DH10B"
/note="Vector: pCR4-TOPO with reversed insert; Clone
identification sequence tag: GGTTGCCG"
gene 1..1025
/gene="Taf1d"
/gene_synonym="2810003M17Rik"
/gene_synonym="5930426I11Rik"
/gene_synonym="TAF(I)41"
/gene_synonym="TAFI41"
/db_xref="GeneID:75316"
/db_xref="MGI:MGI:1922566"
CDS 29..997
/gene="Taf1d"
/gene_synonym="2810003M17Rik"
/gene_synonym="5930426I11Rik"
/gene_synonym="TAF(I)41"
/gene_synonym="TAFI41"
/codon_start=1
/product="TATA box binding protein (Tbp)-associated
factor, RNA polymerase I, D"
/protein_id="AAI17069.1"
/db_xref="GeneID:75316"
/db_xref="MGI:MGI:1922566"
/translation="MAQSEVNSVCVASDRAGDTGDQSDDSSDGSLFKTQCAPSPIQKQ
RHPTVKRVTLPASVETDSSSDSSIEPRPLTLKAIFERFKKKKRKKRKKRKYEPKLRPR
GRPRGKPSGTRITRRSQIDAKQIKDKGAVFPFLESESGRKPLPWKKILTYEQAVARGF
FHHIEKLKYEHHLKECLKQMHAGEDLEKEDLDSRRHKYMDDDGSLSPIEEPLTEDEAT
NPQAECDIKLVEDSCFIISSEFSRKRNLEQEKIKKESTFSKKAKDATHREKGHRRTLK
GNEHVTIEEDSRPQPRPFAHLQSKVMKKGELEYLEVHHLCGLSQPL"
ORIGIN
1 agaaaattgg gaaaggccgc gaaaagtgat ggctcaatca gaagtgaatt ctgtctgtgt
61 ggcatcggat agagctggag atactggaga ccaaagtgat gactcctctg atggcagctt
121 atttaaaact cagtgtgctc cttcacctat acaaaagcaa agacacccta ctgtgaaacg
181 tgttacttta cctgcaagtg ttgaaacaga ttcatcaagt gactcttcta tagaaccaag
241 gcctctgact ttaaaggcta tttttgaaag atttaaaaaa aagaaacgga aaaagaggaa
301 aaagagaaaa tatgagccaa aattaagacc aagaggaaga ccaagaggaa aaccatcggg
361 aacgaggatc actagaaggt cgcaaataga tgcaaaacaa attaaagaca aaggagctgt
421 gtttccattc ttagaatctg agagtggaag aaaaccttta ccttggaaga aaattttaac
481 atatgagcaa gctgttgcaa gaggattttt tcaccacatt gaaaaactca agtatgaaca
541 ccaccttaag gaatgcttga agcaaatgca tgctggggaa gatttagaaa aggaagacct
601 tgacagtcgg aggcacaaat acatggatga tgatggttca ctttctccta ttgaagagcc
661 attaactgaa gatgaagcaa caaatcctca ggctgaatgt gatatcaagt tggttgaaga
721 cagttgcttc ataataagtt cagaattctc aaggaagaga aacttggaac aagagaagat
781 taagaaagaa tctacatttt ctaaaaaagc caaagatgcc acacacagag agaaagggca
841 cagaagaacc ttgaaaggaa atgaacatgt gactattgaa gaagattcaa gaccccagcc
901 tcgccctttt gctcatctgc agagcaaggt catgaagaaa ggagagttag agtatctgga
961 ggttcaccac ctctgtggtc tgtcgcagcc actatgacta tgaggaggaa gagatgattt
1021 gaaaa
//