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PREDICTED: Branchiostoma belcheri sorting nexin-2-like (LOC109471916), transcript variant X1, mRNA

NCBI Reference Sequence: XM_019771397.1

FASTA Graphics 

LOCUS       XM_019771397            2958 bp    mRNA    linear   INV 28-DEC-2016
DEFINITION  PREDICTED: Branchiostoma belcheri sorting nexin-2-like
            (LOC109471916), transcript variant X1, mRNA.
ACCESSION   XM_019771397
VERSION     XM_019771397.1
DBLINK      BioProject: PRJNA358734
KEYWORDS    RefSeq.
SOURCE      Branchiostoma belcheri (Belcher's lancelet)
  ORGANISM  Branchiostoma belcheri
            Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii;
            Amphioxiformes; Branchiostomatidae; Branchiostoma.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_017803865.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Branchiostoma belcheri Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2958
                     /organism="Branchiostoma belcheri"
                     /mol_type="mRNA"
                     /isolate="BF01"
                     /isolation_source="seawater"
                     /db_xref="taxon:7741"
                     /chromosome="Unknown"
                     /sex="male"
                     /cell_type="sperm cells"
                     /tissue_type="gonad"
                     /dev_stage="adult"
                     /geo_loc_name="China: Xiamen Bay"
                     /collection_date="Aug-2008"
                     /breed="outbred"
     gene            1..2958
                     /gene="LOC109471916"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 ESTs, 16 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:109471916"
     CDS             43..1992
                     /gene="LOC109471916"
                     /codon_start=1
                     /product="sorting nexin-2-like isoform X1"
                     /protein_id="XP_019626956.1"
                     /db_xref="GeneID:109471916"
                     /translation="MADDREPPPLFDDEKPDKKEDEDDLFATPNEAPKEEVKDEPASL
                     PTEPAQDKSEDLFAADDDLFGEKQEGVKEVDTSKLLRKLTEDVDDLSPVEEPKPLIPT
                     AADSGKAPQSDTSGKKESPKEKAKEEDSQAKEPKPKEVPASMAKDQSPLKPMKVSVDL
                     HAPKPAQNMQEDSADSPKLEVTDEPPPEMDISGEGEEVDLDSPETEGPSSPAKMEPDS
                     DSSPLEAPPMAEVLPPAKPVPEEKPKPTPAPRKPSMEKSKEEIEEEESGDQFTLDIKV
                     HDPGKVGDGMGAYMSYKVTTQTSIPAFRRPSMTVTRRFSDFLGLHEKLSQKHVHVGRI
                     VPPAPEKSVVGMTKIKMSKEDTSSTEFVEKRRALLERFLQRISIHPVLQMDPDFRDFL
                     EQDELPRATSTSAVSGAGVLRLIKGVGDTLSKVTIKMDESDQWFEEKQNQVEALDQQL
                     KKLHASVEALVTYRKELGISTAAFAKSTAMLSNSEEHTALSRALSQLAEVEEKIEQVH
                     LEQADNDFFLLSELLKDYIGIIQSIRVVFHERVKSFHNWQNAQQNLAKKREQEAKFKQ
                     TGKTDKIAQAQEEIREWEGKVEKGREDFEEISKTIRTEIRRFETNRVKDFRNIIIKYM
                     ETLMNSQQQLIKYWEGFLPEAKAIA"
ORIGIN      
        1 agcggtgtgc atgctaatca catgaccgca tagtcatcca acatggcgga cgatagggag
       61 ccacctcctc tttttgacga cgagaaaccc gacaagaaag aagacgagga tgacttgttt
      121 gcgactccta atgaggcgcc caaggaagag gtaaaagatg agccagccag cctgcccacg
      181 gagcctgccc aggacaagtc tgaggacctg ttcgctgcag acgatgacct atttggagag
      241 aaacaggaag gtgtgaagga ggttgacacg tcaaagcttc ttcggaaact cacggaagat
      301 gtagacgacc tctcacctgt agaggaacca aagcctctca ttccgacagc agcagattcg
      361 ggcaaagcac cccaaagtga tacatctgga aaaaaggaat ctccaaaaga aaaagcaaag
      421 gaggaagatt cacaggccaa ggaacccaag cctaaggaag tgccagccag tatggcaaag
      481 gaccagtctc cgctgaaacc tatgaaagtc tctgtagacc ttcatgcccc caaacctgca
      541 caaaacatgc aggaagactc cgctgactcg cccaaactgg aagttactga cgagcctcct
      601 cctgagatgg acatctctgg agaaggtgag gaggttgacc tggactcccc cgagacggag
      661 ggcccctcca gcccggccaa gatggagcct gactcagact cctcccccct ggaggccccc
      721 cccatggcgg aggtgctccc ccctgccaaa cctgtccccg aggagaaacc caagccgacc
      781 cccgccccac gcaaaccctc catggagaaa tccaaggaag agattgagga agaagaaagt
      841 ggagaccagt ttactttgga catcaaggtg catgatcctg ggaaagttgg tgatggtatg
      901 ggggcctaca tgagttataa agtcaccact cagactagca ttccagcgtt caggcgcccc
      961 agcatgacag tcacgcgacg attcagcgac ttcctcggtc ttcacgagaa actctcgcag
     1021 aaacacgtcc acgtgggccg catcgtgcca cctgctcctg agaagagcgt tgttggtatg
     1081 actaagatca agatgtccaa ggaagacacc agctccactg agtttgtgga gaagaggagg
     1141 gccctcctgg aaaggttcct gcagagaata agtatccacc cagtccttca gatggaccca
     1201 gacttcaggg acttcctgga acaggatgag ctgccgcgtg ccaccagtac ctcggcggtg
     1261 agcggcgcgg gcgtgctgcg actgatcaag ggcgtgggcg acaccctgtc caaggtcacc
     1321 atcaagatgg acgagtcgga ccagtggttc gaggagaaac agaaccaggt ggaggctctg
     1381 gaccagcagc tgaagaagct acacgccagc gtggaggccc tggtcaccta caggaaagag
     1441 cttggtatca gcacggcagc ctttgcgaag agcacagcca tgctgagtaa cagtgaggaa
     1501 cacacggccc tgtcccgcgc cctgtcccag ctcgctgagg tcgaggagaa gattgaacag
     1561 gttcatttgg agcaggcaga caatgatttc ttcctgctgt ctgaactcct gaaggactac
     1621 atcggaatca tccagtccat tagggttgtc ttccacgagc gagtgaagag tttccacaac
     1681 tggcagaacg cccagcagaa cctggccaag aagcgggaac aggaggccaa gttcaaacag
     1741 acgggcaaga ccgacaagat cgcccaggca caggaggaga tcagagagtg ggaaggaaag
     1801 gtggagaagg gccgagaaga cttcgaggag atctccaaga caatccgcac agagatcagg
     1861 aggtttgaga ccaaccgtgt gaaagatttc cgcaacatta tcatcaagta catggaaaca
     1921 ctcatgaaca gtcagcaaca gcttatcaag tactgggaag ggttcctccc tgaagccaaa
     1981 gccatcgcat agacctgctc acaagacggt ggaaacatag agaaccaaca attaagcaga
     2041 gaatcaacca attaaaatca actgcagatc tacacgtagt attagaaatg atcttgattc
     2101 agactgttgg cattgatact atagatgtgt ataaagatac gtagcattag ataaatgtgc
     2161 ctgttgaagt ttgtcctaag gagggggtcg taacagtaca aaaatgtatg taacagcaca
     2221 gtttctagat tatcagaaat atgtaaatga atttgactca ccaggatttt cgaacaaagc
     2281 tctcggtctt catggaaaat ttttgtgagt caaattcttt tgagttggag aacagtttat
     2341 ttctcaatat gtcaattacc aactcagatg aactttcatg ctaatttccc atatgctcct
     2401 aaaccctcct tagaatttgc ctcaacttgt ggataaccag tggatattca agcatctgtc
     2461 attttttcaa tgctttcagt gtgctgattt gaatttctac agttgatcaa aagagatatt
     2521 tgtattttgc atacatgtat gtctgtatgg ctgacaccat gatgattaat taacacaatt
     2581 cagtacaagt tagccttaaa tagcattcct tgaggcttta tattattgaa tatatcagat
     2641 aataatgact ccgtaagtgg aaactaatag ttgtgatttt ggtatcagtg agggaaaaat
     2701 agcttcaggc tcttgccatt ccaacatagc aacaaatgaa ttgtaagctg agttttcttt
     2761 ctgtttttgt aaggaagtga aatgaaacat tactttcaga ctggcatctg tcaatcacag
     2821 aatattagtt cattatgaga gtggctgttt tccaggtgat tcatcgaagt aaaatgtcac
     2881 tggtctcctc taaccaaaat gcacgcaaca gttacatgta ggtatcttca cagaataaag
     2941 agctcagcaa acaacttt
//
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