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GenBank: PUZY02000069.1
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LOCUS PUZY02000069 797 bp DNA linear BCT 14-NOV-2018 DEFINITION Klebsiella pneumoniae subsp. pneumoniae strain CRK0259 CRK0259_NODE_126.ctg_1, whole genome shotgun sequence. ACCESSION PUZY02000069 PUZY02000000 VERSION PUZY02000069.1 DBLINK BioProject: PRJNA433394 BioSample: SAMN08579652 KEYWORDS WGS. SOURCE Klebsiella pneumoniae subsp. pneumoniae ORGANISM Klebsiella pneumoniae subsp. pneumoniae Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella. REFERENCE 1 (bases 1 to 797) AUTHORS Nguyen,K., Fouts,D., Sutton,G., Bonomo,R., Van,D., Hujer,K. and Hujer,A. TITLE Direct Submission JOURNAL Submitted (27-FEB-2018) Informatics Core Services, JCVI, 9605 Medical Center Drive, Rockville, MD 20850, USA REFERENCE 2 (bases 1 to 797) AUTHORS Vanduin,D., Fouts,D., Sutton,G., Nguyen,K., Hujer,A., Hujer,K. and Bonomo,R. TITLE Direct Submission JOURNAL Submitted (18-OCT-2018) Informatics Core Services, JCVI, 9605 Medical Center Drive, Rockville, MD 20850, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.1.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 116.8x Sequencing Technology :: Illumina NextSeq 500 ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/03/2018 07:17:25 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,703 CDS (total) :: 5,609 Genes (coding) :: 5,469 CDS (coding) :: 5,469 Genes (RNA) :: 94 rRNAs :: 8, 2, 7 (5S, 16S, 23S) complete rRNAs :: 8, 1 (5S, 16S) partial rRNAs :: 1, 7 (16S, 23S) tRNAs :: 67 ncRNAs :: 10 Pseudo Genes (total) :: 140 Pseudo Genes (ambiguous residues) :: 0 of 140 Pseudo Genes (frameshifted) :: 56 of 140 Pseudo Genes (incomplete) :: 89 of 140 Pseudo Genes (internal stop) :: 25 of 140 Pseudo Genes (multiple problems) :: 27 of 140 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..797 /organism="Klebsiella pneumoniae subsp. pneumoniae" /mol_type="genomic DNA" /submitter_seqid="CRK0259_NODE_126.ctg_1" /strain="CRK0259" /isolation_source="blood" /host="Homo sapiens" /sub_species="pneumoniae" /db_xref="taxon:72407" /geo_loc_name="USA: Ohio" /collection_date="2013" gene <1..108 /locus_tag="C5X72_012275" CDS <1..108 /locus_tag="C5X72_012275" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_001533749.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="dibenzothiophene desulfurase" /protein_id="RNZ84554.1" /translation="KSAQIREILISESAWEEMTCLFAPSLSSAAVRWLP" gene 105..431 /locus_tag="C5X72_012280" CDS 105..431 /locus_tag="C5X72_012280" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_004159231.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="RNZ84555.1" /translation="MSTYTLSCLMSAALELPRCCIVIANLSGSYVAQTKAIAEAISNL QQEASRQASTITPVQLAGTCSSLAPLRLDAGRFSLASRFDLPKYRRLHCPQSFRPGCY RPRLSG" gene complement(510..797) /locus_tag="C5X72_012285" /pseudo CDS complement(510..797) /locus_tag="C5X72_012285" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_010466230.1" /note="frameshifted; incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology." /pseudo /codon_start=3 /transl_table=11 /product="transposase" ORIGIN 1 aaatcggccc agatccgcga aattttaatc agcgagtcag cttgggaaga aatgacctgc 61 ttattcgcac cttccctgtc atcggcggcg gtacgctggc taccgtgagc acctacacac 121 tcagctgcct gatgagcgcc gctctggagt taccgcgttg ctgcattgtg attgccaacc 181 tatccggcag ctatgtggct cagaccaagg caattgccga agcaatctct aacctccagc 241 aagaagccag tcgccaagcg agcaccatca cccccgtgca gttggcgggt acctgttcat 301 ccctggcgcc tctccgcctt gatgctggca gattcagtct ggcctcgcgg ttcgacctac 361 cgaaatatcg gcggttacat tgtccccaga gcttcagacc cggctgttac cggccacgcc 421 tgtctgggta gggaacgagt ggtggaacag tcggttccgt cgggcgttaa cctgcggaac 481 agaaacccat gcgactttca ggtcgcactg ccgaaataat actggtttcc cttcttggtc 541 tggtgcattt ccgggtcgcg cttgccgtcc ttgttcttgg tcgaactggg cgcattgatc 601 agcgttgcat cgacgatggt gccctggcgc agcgacaggc cgcggtcgcc cagagccatt 661 gatgacagcg aggatgccgg ccgccagctc gtgtttctcc agcaagcggc ggaagttgag 721 aatggtggtt tcgtcgggga tgcgctccag gttcagcccg gcaaactggc gcaggatcgt 781 ggtttcgtac agcgctt //
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