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Klebsiella pneumoniae subsp. pneumoniae strain CRK0259 CRK0259_NODE_126.ctg_1, whole genome shotgun sequence

GenBank: PUZY02000069.1

FASTA Graphics 

LOCUS       PUZY02000069             797 bp    DNA     linear   BCT 14-NOV-2018
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain CRK0259
            CRK0259_NODE_126.ctg_1, whole genome shotgun sequence.
ACCESSION   PUZY02000069 PUZY02000000
VERSION     PUZY02000069.1
DBLINK      BioProject: PRJNA433394
            BioSample: SAMN08579652
KEYWORDS    WGS.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
            Klebsiella.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Nguyen,K., Fouts,D., Sutton,G., Bonomo,R., Van,D., Hujer,K. and
            Hujer,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-FEB-2018) Informatics Core Services, JCVI, 9605
            Medical Center Drive, Rockville, MD 20850, USA
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Vanduin,D., Fouts,D., Sutton,G., Nguyen,K., Hujer,A., Hujer,K. and
            Bonomo,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2018) Informatics Core Services, JCVI, 9605
            Medical Center Drive, Rockville, MD 20850, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 116.8x
            Sequencing Technology  :: Illumina NextSeq 500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 11/03/2018 07:17:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,703
            CDS (total)                       :: 5,609
            Genes (coding)                    :: 5,469
            CDS (coding)                      :: 5,469
            Genes (RNA)                       :: 94
            rRNAs                             :: 8, 2, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 1 (5S, 16S)
            partial rRNAs                     :: 1, 7 (16S, 23S)
            tRNAs                             :: 67
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 140
            Pseudo Genes (ambiguous residues) :: 0 of 140
            Pseudo Genes (frameshifted)       :: 56 of 140
            Pseudo Genes (incomplete)         :: 89 of 140
            Pseudo Genes (internal stop)      :: 25 of 140
            Pseudo Genes (multiple problems)  :: 27 of 140
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /submitter_seqid="CRK0259_NODE_126.ctg_1"
                     /strain="CRK0259"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /geo_loc_name="USA: Ohio"
                     /collection_date="2013"
     gene            <1..108
                     /locus_tag="C5X72_012275"
     CDS             <1..108
                     /locus_tag="C5X72_012275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001533749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dibenzothiophene desulfurase"
                     /protein_id="RNZ84554.1"
                     /translation="KSAQIREILISESAWEEMTCLFAPSLSSAAVRWLP"
     gene            105..431
                     /locus_tag="C5X72_012280"
     CDS             105..431
                     /locus_tag="C5X72_012280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004159231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="RNZ84555.1"
                     /translation="MSTYTLSCLMSAALELPRCCIVIANLSGSYVAQTKAIAEAISNL
                     QQEASRQASTITPVQLAGTCSSLAPLRLDAGRFSLASRFDLPKYRRLHCPQSFRPGCY
                     RPRLSG"
     gene            complement(510..797)
                     /locus_tag="C5X72_012285"
                     /pseudo
     CDS             complement(510..797)
                     /locus_tag="C5X72_012285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010466230.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing start and stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
ORIGIN      
        1 aaatcggccc agatccgcga aattttaatc agcgagtcag cttgggaaga aatgacctgc
       61 ttattcgcac cttccctgtc atcggcggcg gtacgctggc taccgtgagc acctacacac
      121 tcagctgcct gatgagcgcc gctctggagt taccgcgttg ctgcattgtg attgccaacc
      181 tatccggcag ctatgtggct cagaccaagg caattgccga agcaatctct aacctccagc
      241 aagaagccag tcgccaagcg agcaccatca cccccgtgca gttggcgggt acctgttcat
      301 ccctggcgcc tctccgcctt gatgctggca gattcagtct ggcctcgcgg ttcgacctac
      361 cgaaatatcg gcggttacat tgtccccaga gcttcagacc cggctgttac cggccacgcc
      421 tgtctgggta gggaacgagt ggtggaacag tcggttccgt cgggcgttaa cctgcggaac
      481 agaaacccat gcgactttca ggtcgcactg ccgaaataat actggtttcc cttcttggtc
      541 tggtgcattt ccgggtcgcg cttgccgtcc ttgttcttgg tcgaactggg cgcattgatc
      601 agcgttgcat cgacgatggt gccctggcgc agcgacaggc cgcggtcgcc cagagccatt
      661 gatgacagcg aggatgccgg ccgccagctc gtgtttctcc agcaagcggc ggaagttgag
      721 aatggtggtt tcgtcgggga tgcgctccag gttcagcccg gcaaactggc gcaggatcgt
      781 ggtttcgtac agcgctt
//
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