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Rattus norvegicus partial mRNA for RT1-El protein

GenBank: AJ276126.3

FASTA Graphics 

LOCUS       AJ276126                 921 bp    mRNA    linear   ROD 26-JUL-2016
DEFINITION  Rattus norvegicus partial mRNA for RT1-El protein.
ACCESSION   AJ276126
VERSION     AJ276126.3
KEYWORDS    rt1-El gene.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1
  AUTHORS   McLaren,F.H.
  JOURNAL   Thesis (2000) Laboratory of Functinnal Immunogenetics, The Babraham
            Institute, Cambridge, U.K
REFERENCE   2
  AUTHORS   Solier,C., McLaren,F., Amadou,C., Le Bouteiller,P. and Joly,E.
  TITLE     Detection of transcripts for a soluble form of the RT1-E MHC class
            Ib molecule in rat placenta
  JOURNAL   Immunogenetics 53 (4), 351-356 (2001)
   PUBMED   11491540
REFERENCE   3
  AUTHORS   McLaren,F.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-FEB-2000) McLaren F.H., Laboratory of Functinnal
            Immunogenetics, The Babraham Institute, Babraham Hall, Cambridge,
            CB2 4AT, UNITED KINGDOM
  REMARK    revised by [3]
REFERENCE   4  (bases 1 to 921)
  AUTHORS   Joly,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2001) Joly E., Unite CNRS UPR 2163, CHU Purpan,
            31300 Toulouse, FRANCE
COMMENT     On Sep 16, 2001 this sequence version replaced AJ276126.2.
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Lewis"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /clone="15gem"
                     /cell_type="neural stem cells"
                     /tissue_type="brain striatum"
                     /dev_stage="embryo"
                     /note="mRNA was extracted from neurospheres prepared from
                     E16 striatum. These had been in culture for 1 week."
     gene            <1..921
                     /gene="rt1-El"
     CDS             <1..921
                     /gene="rt1-El"
                     /note="putative soluble class I molecule"
                     /citation=[2]
                     /codon_start=1
                     /product="RT1-El protein"
                     /protein_id="CAB86228.2"
                     /db_xref="GOA:Q9JJU7"
                     /db_xref="HSSP:1JF1"
                     /db_xref="InterPro:IPR001039"
                     /db_xref="InterPro:IPR003006"
                     /db_xref="InterPro:IPR003597"
                     /db_xref="InterPro:IPR007110"
                     /db_xref="InterPro:IPR010579"
                     /db_xref="InterPro:IPR011161"
                     /db_xref="InterPro:IPR011162"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="UniProtKB/TrEMBL:Q9JJU7"
                     /translation="GSHSLRYFHTAVSRPGLREPRFVIVGYVDHTEFVRYDSDAENPR
                     YEQRARWMEREGPEYWEQQTQIVKGHEWSFRVSLRNLLGYYNQSEGGSHTLQVMSGCD
                     MGSDRSLRRGYEQYAYDGRDYISLNEDLKTWSAADLAAQITLNKWDQAGELDYYKTYL
                     EGPCLEWLLRYLEHGKETLMRSDPPKAHVTLHPRHEGDVTLRCWALGFYPADITLTWQ
                     LNGEDLTQDMELVETRPAGDGTFQKWASVVVPLGKEQKYTCLVEHEGLPEPLTLRWAF
                     LLTSGKGVYTPAPGRDSSQSSDVSLPDCKA"
     mat_peptide     1..918
                     /gene="rt1-El"
                     /product="RT1-El"
                     /citation=[2]
ORIGIN      
        1 ggctcacact cgctgcggta tttccacacc gccgtgtcca ggcccggcct ccgggagccc
       61 cggttcgtta tcgtcggcta tgtggaccac acggagttcg tgcgctacga cagcgacgca
      121 gagaatccga gatacgagca gcgggcgcgg tggatggagc gggaggggcc ggagtattgg
      181 gagcagcaga cacagatcgt caagggacac gaatggagtt tccgagtgag cctgaggaat
      241 ctgctaggct actacaacca gagcgagggc ggctctcaca cgctccaggt gatgtctgga
      301 tgtgacatgg ggtctgaccg gagcctgcgc cgcgggtatg agcaatacgc ctatgacggc
      361 cgcgattaca tctctctgaa cgaagacctg aagacgtggt cggctgcgga cttggcagca
      421 cagatcactc taaacaagtg ggatcaggct ggtgaattag actattacaa gacctacctg
      481 gagggtccat gcctggagtg gcttctcaga tacctggagc acgggaagga gacactgatg
      541 cgctcagatc ccccaaaggc acatgtgacc cttcacccca gacatgaagg tgatgtgacc
      601 ctgaggtgct gggccctggg cttctaccct gctgacatca ccctgacctg gcagttgaat
      661 ggggaggacc tgacccagga catggagctt gtggagacca ggcctgcagg ggatggaacc
      721 ttccagaagt gggcatctgt ggtggtgcct cttgggaaag agcagaagta cacatgcctt
      781 gtagaacatg aggggctgcc tgagcctctt accttgagat gggcttttct tctcacaagt
      841 ggaaaaggag tttacacccc tgctccaggc agggacagct cccagagctc tgatgtgtct
      901 ctcccagatt gtaaagcatg a
//
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