LOCUS BC162045 943 bp mRNA linear ROD 10-JUN-2008
DEFINITION Rattus norvegicus similar to cDNA sequence BC031181, mRNA (cDNA
clone MGC:188006 IMAGE:7107313), complete cds.
ACCESSION BC162045
VERSION BC162045.1
KEYWORDS MGC.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 943)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 943)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-APR-2008) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Howard Jacobs
cDNA Library Preparation: Express Genomics
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 336 Row: d Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..943
/organism="Rattus norvegicus"
/mol_type="mRNA"
/db_xref="taxon:10116"
/clone="MGC:188006 IMAGE:7107313"
/tissue_type="Kidney, rat (Brown Norway)"
/clone_lib="NIH_MGC_235"
/lab_host="DH10B"
/note="Vector: pExpress1"
gene 1..943
/gene="RGD1562987"
/db_xref="GeneID:498886"
/db_xref="RGD:1562987"
CDS 129..347
/gene="RGD1562987"
/codon_start=1
/product="RGD1562987 protein"
/protein_id="AAI62045.1"
/db_xref="GeneID:498886"
/db_xref="RGD:1562987"
/translation="MVCIPCIVIPVLLWIFKKFLEPYIYPVVSRIWPRKAVQQLDNKN
TGKVDCKGADTNGFSTKGPTEVSDKKKD"
ORIGIN
1 cattgccctg ggcgtcttgg tggtggcgag tgactctcgc agcggttgtc agcggcttga
61 cgtccccaga cgctgtgcgg tgcgccggta taccccagga attagtttca gaaatccagc
121 gtgggacgat ggtgtgcatt ccttgtatcg tcattccagt gctgctctgg atcttcaaaa
181 agttcctgga gccatacata taccccgtgg tcagtcgcat atggccgaga aaagctgtac
241 agcaattgga caataagaat acgggcaagg tagactgcaa gggtgcagat acaaatggat
301 tctccacaaa aggaccaaca gaggtctccg ataaaaagaa agactagtgt ggttctcttg
361 aaggccctgg gctgtttcca aatggacctg ataacatgaa gcaccttctc tgtctctgac
421 cttttttctc tgagaccagg attctagata aatagtttag cttctgcctg atactaatca
481 gggagtacag gtatttatat ttaaaattcc agtagttata tttaatgagc atacctacgt
541 tcccttttca ttaaagtagc tttcatttct attattccgt tttactgata ggaacaaata
601 ggaggtctgt gtgagcagac actcagagcc cagtccttag gcctttgcct tctttctcat
661 gagtttgccg ttttcacttc ccgtgggttc ttgtaccttg agtgggagga gtcttagcgt
721 gacacagggc ggtccgtggt gggatgcgat gtgattactg atcactacca agcgcagtgg
781 ccagcagatg gccgagaata gtcactgctc cgaggaagct gggaaaggtc taacatcaac
841 atcatcgtca gtcacacaac ttctaattct ctgtacttct agtcctgaca atgtattaaa
901 cacccattta acttgaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//