Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
Download features.
Download gene features.
NCBI Reference Sequence: XM_040556224.1
FASTA Graphics
LOCUS XM_040556224 2775 bp mRNA linear VRT 08-APR-2021 DEFINITION PREDICTED: Cygnus olor protein tyrosine phosphatase receptor type A (PTPRA), transcript variant X6, mRNA. ACCESSION XM_040556224 VERSION XM_040556224.1 DBLINK BioProject: PRJNA642912 KEYWORDS RefSeq. SOURCE Cygnus olor (mute swan) ORGANISM Cygnus olor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Anserinae; Cygnus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_049172.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cygnus olor Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2775 /organism="Cygnus olor" /mol_type="mRNA" /isolate="bCygOlo1" /db_xref="taxon:8869" /chromosome="4" /sex="male" /tissue_type="muscle" /dev_stage="adult" /geo_loc_name="Germany: Mainau" /lat_lon="50.149850 N 11.063270 E" /collection_date="2015-07-01" /collected_by="Robert Kraus" gene 1..2775 /gene="PTPRA" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 long SRA reads, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:121069771" CDS 56..2521 /gene="PTPRA" /codon_start=1 /product="receptor-type tyrosine-protein phosphatase alpha isoform X2" /protein_id="XP_040412158.1" /db_xref="GeneID:121069771" /translation="MQVDDLLTIIKVNMDLWFFVLLLGSGLISVGAHNVTTEPPTAAP TSSRSPSRAPTAAPEDGRTTSAHGLNASSPAAASTLPSELATTTAPSISPNATTVVPN ASTPGMPVPTPVPPATPLLPSATPPAPSTAAPSTEAEVTEGNVSATVPSQETSSASHN SNSDRRDETPIIAVMVALSSLLVIVFIIIVLYMLRFKKYKQAGSHSNSFRLPNGRTDD AEPQSMPLLARSPSTNRKYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATC EAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQG PKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNIRVSVEDVT VLVDYTVRKFCIQQVGDVTNKKPQRLVTQFHFTSWPDFGVPFTPIGMLKFLKKVKTCN PQYAGAIVVHCSAGVGRTGTFIVIDAMLDMMHAERKVDVYGFVSRIRAQRCQMVQTDM QYVFIYQALLEHYLYGDTELEVTSLEIHLQKIYNKVPGTSSNGLEEEFKKLTSIKIQN DKMRTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIA SQGPLQHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGSVSYGDITVELK KEEECESYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ QSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLE QYEFCYKVVQEYIDAFSDYANFK" ORIGIN 1 ttgtgctggg aagctggggg caccactgga agaaccttta tgggctcgta atgacatgca 61 ggtggacgat ttactgacga taattaaggt caacatggat ttgtggttct tcgtcctttt 121 gctgggaagt ggcctgatca gcgtaggtgc tcacaatgtt acaacagagc cccccaccgc 181 agcgcccacc tcctccagga gccccagcag agctcctacg gcagctcccg aggacggcag 241 gacgacgagc gcccacggcc tcaacgccag ctctccggcg gctgcttcca ccctgccgtc 301 ggagctggct acgaccacag cccccagcat ctcccccaac gccaccaccg tcgtccccaa 361 cgcctccacc ccggggatgc cggtgcccac cccagtgcct ccggccaccc cgctgctgcc 421 cagcgccacg ccgcctgccc ccagcaccgc ggcccccagc accgaagcgg aggtgaccga 481 ggggaacgtc agcgccacgg tgccgagcca ggagacctct tctgcttccc acaacagtaa 541 ctccgacaga agagatgaga ctccaattat tgctgtgatg gtggccctgt cttccctcct 601 agtcatagta tttattatta ttgtgctgta catgttaagg ttcaagaaat acaagcaagc 661 agggagtcac tccaactcct tccgcttgcc caacggccgg acggacgatg cagagcctca 721 gagcatgccg ctgctcgcca ggtcccccag caccaacagg aaatacccac ctctgcccgt 781 cgacaagctg gaagaggaga tcaaccgccg gatggcagat gacaacaagc tcttccgaga 841 agagttcaac gctctcccag cgtgtcccat tcaggccacg tgtgaagctg cttccaagga 901 ggagaacaag gagaagaacc gatacgtgaa tattttgccc tatgatcatt ccagggttca 961 cctgactccc gtcgaagggg ttcctgactc tgactacatt aatgcctcct tcattaatgg 1021 gtaccaagag aaaaacaagt tcattgctgc acaaggacca aaggaagaaa cggtgaatga 1081 cttctggagg atgatctggg agcaaaacac ggcaacgatc gtgatggtga ccaacctgaa 1141 ggagaggaag gagtgtaaat gtgctcagta ctggccggat cagggctgct ggacctacgg 1201 gaacatccgg gtgtccgtgg aggacgtgac ggtgctggtg gactacaccg tgcgcaagtt 1261 ctgcatccag caggtaggcg acgtcacgaa caagaagcct cagcgcctcg tgacgcagtt 1321 ccacttcacc agctggcccg acttcggggt gcccttcact cccatcggga tgctgaagtt 1381 cttgaagaag gtgaagacgt gcaaccccca gtacgcagga gccatcgtgg tgcactgcag 1441 cgccggggtg ggacgcacgg gcactttcat cgtcatcgac gccatgctgg acatgatgca 1501 cgctgagagg aaggtggacg tttacggctt cgtcagccga atccgggctc agcgctgcca 1561 gatggtacag acagatatgc agtatgtgtt catataccaa gcgctcctgg agcactatct 1621 ctacggcgac acggagctgg aggtgacttc gttagaaatc cacctccaga agatctacaa 1681 caaagtgcca gggaccagca gcaacggcct ggaagaggag ttcaagaagc tgacttcgat 1741 caaaattcag aacgacaaga tgaggacggg caatttgccg gcaaacatga agaagaacag 1801 ggtgcttcag ataattccat atgaattcaa ccgagtaatc attccagtga agagaggtga 1861 agaaaacaca gactacgtaa atgcgtcctt cattgacggt tatcgccaga aggattccta 1921 catcgccagc caagggccgc tgcagcacac gatagaggac ttctggagga tgatctggga 1981 gtggaaatcc tgctccatcg tgatgctgac ggagctggag gagagaggcc aggagaagtg 2041 cgcccagtac tggccctccg acggctccgt gtcctacgga gacatcaccg tggagctgaa 2101 aaaagaggag gagtgcgaga gctacacggt gcgggacctg ctggtgacca acaccaggga 2161 aaacaagagc cgacagatcc ggcagtttca tttccacggc tggcccgagg ttgggatccc 2221 cagcgacggg aaggggatga tcaacatcat cgcggctgtg cagaagcagc agcagcagtc 2281 gggcaaccac cccatcactg tgcactgcag tgccggagca ggaagaacgg gaaccttctg 2341 tgcgctgagc accgtcctgg aaagggtgaa ggcagaaggg attctcgacg tctttcagac 2401 ggtgaagagc ttaagactac agaggccgca tatggtgcag acactggaac agtacgaatt 2461 ctgctacaag gtggtgcagg aatacatcga cgccttctca gactacgcca acttcaagtg 2521 aaaaaaatac aaaaaaaaaa gaaaaaaaaa gacaaaaaat gacagaagag ttgccttctt 2581 taatattttg taatattctg tttgttaata taccccccca gaatatgtgt atatatctta 2641 actgttttag aggttggtac cacgagcttc atcttagctg gagattttat atgtagcaaa 2701 gtgttagtgc agatactgtc ggctcctttt tttttccaat gttttattgg ggaattaaat 2761 agcgtgatgt ttgga //
Whole sequence Selected region from: to:
All features Gene, RNA, and CDS features only
Show sequence Show reverse complement Show gap features
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on