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PREDICTED: Cygnus olor protein tyrosine phosphatase receptor type A (PTPRA), transcript variant X6, mRNA

NCBI Reference Sequence: XM_040556224.1

FASTA Graphics 

LOCUS       XM_040556224            2775 bp    mRNA    linear   VRT 08-APR-2021
DEFINITION  PREDICTED: Cygnus olor protein tyrosine phosphatase receptor type A
            (PTPRA), transcript variant X6, mRNA.
ACCESSION   XM_040556224
VERSION     XM_040556224.1
DBLINK      BioProject: PRJNA642912
KEYWORDS    RefSeq.
SOURCE      Cygnus olor (mute swan)
  ORGANISM  Cygnus olor
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes;
            Anatidae; Anserinae; Cygnus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_049172.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Cygnus olor Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.6
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2775
                     /organism="Cygnus olor"
                     /mol_type="mRNA"
                     /isolate="bCygOlo1"
                     /db_xref="taxon:8869"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /geo_loc_name="Germany: Mainau"
                     /lat_lon="50.149850 N 11.063270 E"
                     /collection_date="2015-07-01"
                     /collected_by="Robert Kraus"
     gene            1..2775
                     /gene="PTPRA"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 67 long SRA reads, 22 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:121069771"
     CDS             56..2521
                     /gene="PTPRA"
                     /codon_start=1
                     /product="receptor-type tyrosine-protein phosphatase alpha
                     isoform X2"
                     /protein_id="XP_040412158.1"
                     /db_xref="GeneID:121069771"
                     /translation="MQVDDLLTIIKVNMDLWFFVLLLGSGLISVGAHNVTTEPPTAAP
                     TSSRSPSRAPTAAPEDGRTTSAHGLNASSPAAASTLPSELATTTAPSISPNATTVVPN
                     ASTPGMPVPTPVPPATPLLPSATPPAPSTAAPSTEAEVTEGNVSATVPSQETSSASHN
                     SNSDRRDETPIIAVMVALSSLLVIVFIIIVLYMLRFKKYKQAGSHSNSFRLPNGRTDD
                     AEPQSMPLLARSPSTNRKYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATC
                     EAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQG
                     PKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNIRVSVEDVT
                     VLVDYTVRKFCIQQVGDVTNKKPQRLVTQFHFTSWPDFGVPFTPIGMLKFLKKVKTCN
                     PQYAGAIVVHCSAGVGRTGTFIVIDAMLDMMHAERKVDVYGFVSRIRAQRCQMVQTDM
                     QYVFIYQALLEHYLYGDTELEVTSLEIHLQKIYNKVPGTSSNGLEEEFKKLTSIKIQN
                     DKMRTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDSYIA
                     SQGPLQHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPSDGSVSYGDITVELK
                     KEEECESYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINIIAAVQKQQQ
                     QSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLE
                     QYEFCYKVVQEYIDAFSDYANFK"
ORIGIN      
        1 ttgtgctggg aagctggggg caccactgga agaaccttta tgggctcgta atgacatgca
       61 ggtggacgat ttactgacga taattaaggt caacatggat ttgtggttct tcgtcctttt
      121 gctgggaagt ggcctgatca gcgtaggtgc tcacaatgtt acaacagagc cccccaccgc
      181 agcgcccacc tcctccagga gccccagcag agctcctacg gcagctcccg aggacggcag
      241 gacgacgagc gcccacggcc tcaacgccag ctctccggcg gctgcttcca ccctgccgtc
      301 ggagctggct acgaccacag cccccagcat ctcccccaac gccaccaccg tcgtccccaa
      361 cgcctccacc ccggggatgc cggtgcccac cccagtgcct ccggccaccc cgctgctgcc
      421 cagcgccacg ccgcctgccc ccagcaccgc ggcccccagc accgaagcgg aggtgaccga
      481 ggggaacgtc agcgccacgg tgccgagcca ggagacctct tctgcttccc acaacagtaa
      541 ctccgacaga agagatgaga ctccaattat tgctgtgatg gtggccctgt cttccctcct
      601 agtcatagta tttattatta ttgtgctgta catgttaagg ttcaagaaat acaagcaagc
      661 agggagtcac tccaactcct tccgcttgcc caacggccgg acggacgatg cagagcctca
      721 gagcatgccg ctgctcgcca ggtcccccag caccaacagg aaatacccac ctctgcccgt
      781 cgacaagctg gaagaggaga tcaaccgccg gatggcagat gacaacaagc tcttccgaga
      841 agagttcaac gctctcccag cgtgtcccat tcaggccacg tgtgaagctg cttccaagga
      901 ggagaacaag gagaagaacc gatacgtgaa tattttgccc tatgatcatt ccagggttca
      961 cctgactccc gtcgaagggg ttcctgactc tgactacatt aatgcctcct tcattaatgg
     1021 gtaccaagag aaaaacaagt tcattgctgc acaaggacca aaggaagaaa cggtgaatga
     1081 cttctggagg atgatctggg agcaaaacac ggcaacgatc gtgatggtga ccaacctgaa
     1141 ggagaggaag gagtgtaaat gtgctcagta ctggccggat cagggctgct ggacctacgg
     1201 gaacatccgg gtgtccgtgg aggacgtgac ggtgctggtg gactacaccg tgcgcaagtt
     1261 ctgcatccag caggtaggcg acgtcacgaa caagaagcct cagcgcctcg tgacgcagtt
     1321 ccacttcacc agctggcccg acttcggggt gcccttcact cccatcggga tgctgaagtt
     1381 cttgaagaag gtgaagacgt gcaaccccca gtacgcagga gccatcgtgg tgcactgcag
     1441 cgccggggtg ggacgcacgg gcactttcat cgtcatcgac gccatgctgg acatgatgca
     1501 cgctgagagg aaggtggacg tttacggctt cgtcagccga atccgggctc agcgctgcca
     1561 gatggtacag acagatatgc agtatgtgtt catataccaa gcgctcctgg agcactatct
     1621 ctacggcgac acggagctgg aggtgacttc gttagaaatc cacctccaga agatctacaa
     1681 caaagtgcca gggaccagca gcaacggcct ggaagaggag ttcaagaagc tgacttcgat
     1741 caaaattcag aacgacaaga tgaggacggg caatttgccg gcaaacatga agaagaacag
     1801 ggtgcttcag ataattccat atgaattcaa ccgagtaatc attccagtga agagaggtga
     1861 agaaaacaca gactacgtaa atgcgtcctt cattgacggt tatcgccaga aggattccta
     1921 catcgccagc caagggccgc tgcagcacac gatagaggac ttctggagga tgatctggga
     1981 gtggaaatcc tgctccatcg tgatgctgac ggagctggag gagagaggcc aggagaagtg
     2041 cgcccagtac tggccctccg acggctccgt gtcctacgga gacatcaccg tggagctgaa
     2101 aaaagaggag gagtgcgaga gctacacggt gcgggacctg ctggtgacca acaccaggga
     2161 aaacaagagc cgacagatcc ggcagtttca tttccacggc tggcccgagg ttgggatccc
     2221 cagcgacggg aaggggatga tcaacatcat cgcggctgtg cagaagcagc agcagcagtc
     2281 gggcaaccac cccatcactg tgcactgcag tgccggagca ggaagaacgg gaaccttctg
     2341 tgcgctgagc accgtcctgg aaagggtgaa ggcagaaggg attctcgacg tctttcagac
     2401 ggtgaagagc ttaagactac agaggccgca tatggtgcag acactggaac agtacgaatt
     2461 ctgctacaag gtggtgcagg aatacatcga cgccttctca gactacgcca acttcaagtg
     2521 aaaaaaatac aaaaaaaaaa gaaaaaaaaa gacaaaaaat gacagaagag ttgccttctt
     2581 taatattttg taatattctg tttgttaata taccccccca gaatatgtgt atatatctta
     2641 actgttttag aggttggtac cacgagcttc atcttagctg gagattttat atgtagcaaa
     2701 gtgttagtgc agatactgtc ggctcctttt tttttccaat gttttattgg ggaattaaat
     2761 agcgtgatgt ttgga
//
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