LOCUS NZ_JAGGRD010000029 34913 bp DNA linear CON 27-JUN-2024
DEFINITION Paenibacillus sp. ISL-20 ISL20_30, whole genome shotgun sequence.
ACCESSION NZ_JAGGRD010000029 NZ_JAGGRD010000000
VERSION NZ_JAGGRD010000029.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN18299025
Assembly: GCF_018613005.1
KEYWORDS WGS; RefSeq.
SOURCE Paenibacillus sp. ISL-20
ORGANISM Paenibacillus sp. ISL-20
Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
Paenibacillaceae; Paenibacillus.
REFERENCE 1 (bases 1 to 34913)
AUTHORS Gonzalez,M., Maldonado,J., Maza,F., Hodar,C., Cortes,M., Palma,R.,
Andreani,C., Gaete,A., Vasquez-Dean,J., Acuna,V., Aguado,M.,
Mandakovic,D., Latorre,M., Orellana,A., Gutierrez,R., Montecino,M.,
Allende,M., Maass,A. and Cambiazo,V.
TITLE Genomic analysis provides insights into the functional capacity of
soil bacteria communities inhabiting an altitudinal gradient in the
Atacama Desert
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 34913)
AUTHORS Gonzalez,M., Maldonado,J., Maza,F., Hodar,C., Cortes,M., Palma,R.,
Andreani,C., Gaete,A., Vasquez-Dean,J., Acuna,V., Aguado,M.,
Mandakovic,D., Latorre,M., Orellana,A., Gutierrez,R., Montecino,M.,
Allende,M., Maass,A. and Cambiazo,V.
TITLE Direct Submission
JOURNAL Submitted (10-MAR-2021) Bioinformatics, Center for Genome
Regulation (CRG), Av. Blanco Encalada 2085, 3rd floor., Santiago,
Santiago 8320000, Chile
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
JAGGRD010000029.1.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: AUG-2019
Assembly Method :: CLC Genomics Workbench v. 8.5.1
Genome Representation :: Full
Expected Final Version :: No
Genome Coverage :: 50x
Sequencing Technology :: Illumina GAIIx
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Name :: GCF_018613005.1-RS_2024_06_27
Annotation Date :: 06/27/2024 04:37:43
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.7
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 6,847
CDSs (total) :: 6,765
Genes (coding) :: 6,615
CDSs (with protein) :: 6,615
Genes (RNA) :: 82
rRNAs :: 3, 2 (5S, 16S)
complete rRNAs :: 3 (5S)
partial rRNAs :: 2 (16S)
tRNAs :: 73
ncRNAs :: 4
Pseudo Genes (total) :: 150
CDSs (without protein) :: 150
Pseudo Genes (ambiguous residues) :: 0 of 150
Pseudo Genes (frameshifted) :: 65 of 150
Pseudo Genes (incomplete) :: 105 of 150
Pseudo Genes (internal stop) :: 22 of 150
Pseudo Genes (multiple problems) :: 33 of 150
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..34913
/organism="Paenibacillus sp. ISL-20"
/mol_type="genomic DNA"
/submitter_seqid="ISL20_30"
/strain="ISL-20"
/isolation_source="soil organic matter[ENVO:04000008]"
/db_xref="taxon:2819163"
/geo_loc_name="Chile: Atacama Desert, between Atacama
Salar and Lajia lagoon"
/lat_lon="23.3285 S 67.7989 W"
/collection_date="2017-04"
gene complement(<1..451)
/locus_tag="J7E85_RS34095"
/pseudo
CDS complement(<1..451)
/locus_tag="J7E85_RS34095"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019910325.1"
/note="incomplete; too short partial abutting assembly
gap; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene complement(783..1856)
/locus_tag="J7E85_RS18200"
/old_locus_tag="J7E85_18075"
CDS complement(783..1856)
/locus_tag="J7E85_RS18200"
/old_locus_tag="J7E85_18075"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009595982.1"
/GO_function="GO:0008641 - ubiquitin-like modifier
activating enzyme activity [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ThiF family adenylyltransferase"
/protein_id="WP_251035823.1"
/translation="MAASESPDRDVTMNKEREDRYSRQERFTPFGKEGQLRLRDSHVL
VLGAGALGSAIAETLVRAGVGHVTIVDRDYVEWSNLQRQQLFIEQDAIDRLPKAVAAA
KRLSEINSDGIVDGVVMDVRAQELSVLCQGVDLMMDATDNFGTRLILNDIGFKHGIPW
IYGGCVGSSGMSYTFLPGETPCLNCLLGTIPLGGDTCDINGILPQAVQMVVAHQTMEA
MKLLSGNRHALRKKMLSFDLWRNERVEFGVDRAKKSDCPTCGEHPKYPYLTAEHADKS
EVLCGRDTVQIRPARPLQLQLDEMADRLNRLHQGKATVTPYMIIYQVNPHRLVIFRDG
RTLVHGTSDIAKARSLYNQYVGG"
gene complement(2038..2847)
/locus_tag="J7E85_RS18205"
/old_locus_tag="J7E85_18080"
CDS complement(2038..2847)
/locus_tag="J7E85_RS18205"
/old_locus_tag="J7E85_18080"
/EC_number="2.7.1.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734693.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/GO_process="GO:0016310 - phosphorylation [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="aminoglycoside phosphotransferase family
protein"
/protein_id="WP_215160156.1"
/translation="MNSENNLNQGEDVMLSPEKSVVRRGQIVYRPAGAWTPAVHSLLR
HLRQSGFTSIPDIIGSGCNEKGQEMLSYIEGEFVHPGPWSDKGIIEVGQLLRQLHDAS
ATFKLQPGLVWKPWFLRKLGDTRVVYSHGDIAPWNMVTRDGMPIALIDWEYAGPVHPF
VELARVCWLFPQLHDDDVAERVGLPNAEVRARQLRLLVDAYGLDPTSRATLFEMIVEV
VVRETAEEAIELQVTPETEGLLWGIAWRARSAAWILRHRGILEKALNARLY"
gene complement(3260..4813)
/locus_tag="J7E85_RS18210"
/old_locus_tag="J7E85_18085"
CDS complement(3260..4813)
/locus_tag="J7E85_RS18210"
/old_locus_tag="J7E85_18085"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_007430640.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ABC-F family ATP-binding cassette
domain-containing protein"
/protein_id="WP_076321167.1"
/translation="MSLLTVENVSHNFGERTLFKNVSFRLLAGEHVGLVGANGVGKST
LMNILTGQLLKDSGKVEWTPKIRYGYLDQHTKLTPGKTVRDVLKDAFLPLLELEKEMM
EITNKMSDASPEELELLLEQMGEIQEQLDIGDFYMLDVKVEEMANGLGLSVIGLDRDV
ATLSGGQRTKVLLAKLLLEKPNVLLLDEPTNYLDVEHIDWLTQYLKQYPYAFILISHD
TEFMNQVVDVIYHLEFAKLTRYTANYEKFLEMADINKNQHIDAYEKQQEFIKKQEDFI
QRNKARYSTSGRAKSREKQLDRMERIDRPEEAAKPVFNFKESRASGKTVFEGIDFEIG
YDRPLLPKMNILIERGEKIAIVGCNGVGKSTLLKTILGKIPALSGKTYQGDFLVPAYF
EQEVRPGNITPIDDVWNEFSHLNQHEVRAALARCGLKNEHITRPLKALSGGEQAKVRL
CKLLMRESNWILFDEPTNHLDVVAKEELRRALKEYKGTILLVSHEPEFYEDWVTKIWN
VEDWSNQNS"
gene complement(4936..5991)
/locus_tag="J7E85_RS18215"
/old_locus_tag="J7E85_18090"
CDS complement(4936..5991)
/locus_tag="J7E85_RS18215"
/old_locus_tag="J7E85_18090"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_007129992.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_215160158.1"
/translation="MKVARTVRRRGKGGDRIKSLPISIDLAIVFTAVFFPMFIILSMR
AESLEDVRYVEMKYSAALRAAVQDGGVMLNDNETQDKESAYDSLKFMRADKERALESF
SRTLYINMGIADDPAAQTALWWYIPAIVVLDYDGYYMYVSQTFTNAYGEGLMEHRWTP
KIPYAWNDGRGNSIQFTLDSFVQVYESGGGSSIWHSGFRQDLTGRTGVALLEEKDRFE
QVRRITIVNTVQDHLAYYIQRHNQAALRNGVSYMFALPLISQEEWVNTIDDIGMMAFI
QGIPLGDQYYNNYALGGGRLVKAPVYFGGVDSRGLKYYYRDVCQYNYRVEEVFPSAKE
AAAAGYQEKSCSNPGVL"
gene complement(6013..7818)
/gene="ltrA"
/locus_tag="J7E85_RS18220"
/old_locus_tag="J7E85_18095"
CDS complement(6013..7818)
/gene="ltrA"
/locus_tag="J7E85_RS18220"
/old_locus_tag="J7E85_18095"
/EC_number="2.7.7.49"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_006210078.1"
/GO_function="GO:0003964 - RNA-directed DNA polymerase
activity [Evidence IEA]"
/GO_process="GO:0000373 - Group II intron splicing
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="group II intron reverse transcriptase/maturase"
/protein_id="WP_215160159.1"
/translation="MQALRYWDYYDMTNTFTELYENARKKICFHNLYDLITTKQNILL
AYRTIKSNKGSRTPGTDGKTIEDLKTLTEEEIVEQISCKLSNYQPRKVRRVHIPKPNG
KKRPLGIPCIEDRIIQQCFKQILEPIAEAYFYRHSYGFRPIRSTHNAIARIQHLVNTA
GLHYVVDVDIQGFFDNVNHTLLIKQLWNMGIRDKRVLRIISKMLKAEIEGEGIPSKGT
PQGGILSPLLSNIVLNDLDQWVSGQWETFVTNITYAGKYHRNRALKKTNLKEGYIVRY
ADDFKILSRDWKTAQKWYHAVRLYLKGRLKLDISPEKSQVVNLRKRKSEFLGFTIWAE
KKGKRRVAYTGISDKKKKQIKNDAKTRIMALHKKPVTQNALLYNSFVLGVHNYFSKAT
HVSVEFSRLAYDLKAFTYNRLKSVGKYQYPGIPPPTYKKFYKSNYRTFKVCGVLLFPL
RDVKTVNNLNFQQGLNPFTPGGRAILIKELNPDIRAEISKLLKSKIPYRTVEYMDNRL
SRYSMRAGKCEITGIFLFADEVHCHHYLPLHLGGSDSYSNLRILHKNIHMIVHASKPE
TIVKLMSKFDFDDTMIQKIEQYRKMSNLEPIDNLI"
gene complement(8511..9068)
/locus_tag="J7E85_RS18225"
/old_locus_tag="J7E85_18100"
CDS complement(8511..9068)
/locus_tag="J7E85_RS18225"
/old_locus_tag="J7E85_18100"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009596008.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_215160161.1"
/translation="MSNSVSKWFAAFLALLLLYLVPAGEMARRQDDLSRLVVYQSVTK
FVDSVRTKGYITPIMYNDFLQELAATGNIYNVEMEHHHKKYHPEYADPSDPGTFLNRY
SVVYDAYYQEDVMGYLFPESNVDKHDDRRRYRLTAGDHFQVSVSSLNQTPGLMMFDAL
TGSNSGGKAAIAFPYGGLVLNEDYV"
gene complement(9074..9469)
/locus_tag="J7E85_RS18230"
/old_locus_tag="J7E85_18105"
CDS complement(9074..9469)
/locus_tag="J7E85_RS18230"
/old_locus_tag="J7E85_18105"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_006209687.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_251035821.1"
/translation="MREQTISALELAAGVAVFLGAALYAFHIQTMVDGGISAAGKMTQ
EQHAGVVTVEMTNESRKLIYKGSEVLFTLREVQAGGFNMYVDGALFRSGSNPEELDLS
IIDMNARYATEYVRRINGYVESIQFVKVR"
gene complement(9494..9952)
/locus_tag="J7E85_RS18235"
/old_locus_tag="J7E85_18110"
CDS complement(9494..9952)
/locus_tag="J7E85_RS18235"
/old_locus_tag="J7E85_18110"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009596009.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ABC transporter permease"
/protein_id="WP_215160163.1"
/translation="MNNASSALKVAAGIFLTIALITIVVILFISAQEATKTAQNNFSD
IQTELSQAAFTVYDGTTISGSQVTNALRKYKDKDQFGVFIATGKNKAGQWYGNVLEKD
GSIPNPDSRQGNIDFVMDEKSPEYVNPSGKFKATIVKDDSNVIRGIKFDQ"
gene complement(10027..12099)
/locus_tag="J7E85_RS18240"
/old_locus_tag="J7E85_18115"
CDS complement(10027..12099)
/locus_tag="J7E85_RS18240"
/old_locus_tag="J7E85_18115"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009595980.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_215160164.1"
/translation="MTSKDVLILILIISLALFSITFGIMSWMNRRRGYREVTSVKVDA
GEVRSLRGRYRQWFQLAYMYGMKLPLIKAYLKRIRQRIAIMHPYDEISLRFETVRLAF
AITGTIGLTAMLLIWSHPDLGFIIIVILAAAVINNMLVEMFINRLERKILIQSVELFS
SVRHHYQQHGMVEEALYEGAETSGHEISMHAHRIYNALVSNDPDDELERYYEVAPNRY
LKAFAGISHLVMEFGDHARKQGSIYLHGLSGLTKEIQLEILRRDKLDYLMKGLNVIAL
APVFFTKPIERWARSSFPSMDEFYMSKLGFVTKISIYVIIFISYILLQKLQQNRETDY
RAEVQKMTLEERMYRIPVMRWLVKVMAPTPGTVKYDRQMRLLKESNARIKFEWLYIRR
VTFFLLAFFLSLSLAAGLHVQAKHHLLYVPVSLNHSLFGQMNEIERRQAEETVERDRL
LMEQLRMSPDVTGDQIKQMVSETDPTLLTKEQVEITTDRIMTKLQRYDSEYLKWWELL
LSFLAGMAAYAAPLWLLHFHRKVRNMEMRHEIYQFQTVISILRGMERISVEGILEWLN
RFAVIFKIPIQKSLLHYEHGAQLALLELKEDVWFPEFQRLVDKLLLAVDKVPIKDVFD
DLDGEMIFSFEQRKQEYEAMIDTKAAWGRMIGFTPMYALIFMYLVIPLIGMSFSQMET
YYEQIQRL"
gene complement(12089..13999)
/locus_tag="J7E85_RS18245"
/old_locus_tag="J7E85_18120"
CDS complement(12089..13999)
/locus_tag="J7E85_RS18245"
/old_locus_tag="J7E85_18120"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009596013.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ATPase, T2SS/T4P/T4SS family"
/protein_id="WP_215160206.1"
/translation="MLLGNSLNTIWIIVMILFVLLFVYLRYLDTRKPAATMSRGSDPY
SLEAMTAFVKESLHQLTHSQLSDLGLHEEEYRRRLNKRSELRSALKGCVSGDVLDKAY
VKDFLKQLLVRDLGLNESNIHAAIPFENQTELTAQDQFEIILYLYKQRHGEDALSVLL
ETYDLAEPRVIPGYGEGSVYAVTAEDIAYIYESEQRPLLFPEKLDIVVQRIYQQYKGF
SVVDEIRDQRIDGISGGVSGIPVNRDSGQDIFHSQDEFLGLSFSHTESPATGCESVWI
FYRGVSLHLAFLSFGSMLELKRVCQNIYKYNHPGQLSEASGYKVNEMKDGSRVVVVRP
PFAESWAFFVRKFDLPKASLDQLITGNGSELVIGLLRYLMKGSRITAITGAQGSGKTT
LLMAMVGHIYASYTLRVQEMAFELHLRKIYSRRNILSFRETEHISGQAGLDLQKKTDG
TVNILGEVASDEVASWMIQMSQVASLFTVFTHHAKTFKDLVQSLRNSLLKSGVFRQEH
IAEQQVVSVINFDIHLRRDAYGNRYIERITECIPVEKGSLPPFEGTSENRWKSSMEEY
FQLSAEHMRRVNEVSYFVSRNVIEHRDGAYIAAAKLSESSVREMTEQMHPEDAEEFRV
FLASGWGEQSDL"
gene complement(13986..14855)
/locus_tag="J7E85_RS18250"
/old_locus_tag="J7E85_18125"
CDS complement(13986..14855)
/locus_tag="J7E85_RS18250"
/old_locus_tag="J7E85_18125"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734686.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_215160166.1"
/translation="MSLIAVWSPLKSGSGSTMLASSLPIVLALEYQVKVLLAHGGHAG
ERVEQAFTYKQESLDYMTAFQDTGMDALERLHASGRLSPENVRNYTLPLLSDRLDLLC
GPKPIFADAIHAARNAEDRKQAELMTRVMESSKRSYDITVADAGNGVPGAADRAILQA
ADLIVVGLNQNLHILESAIEQERLPAEMSDKACLYIVGKYDRDSHCTLQNIKRRFGIK
TTVLGVPYCSGMTDAWNMRSVMPYMQRSRGGADLKRMSSLYNAVRNLADAVAEHLGLP
ASGSKLGGLHALG"
gene complement(14852..15559)
/locus_tag="J7E85_RS18255"
/old_locus_tag="J7E85_18130"
CDS complement(14852..15559)
/locus_tag="J7E85_RS18255"
/old_locus_tag="J7E85_18130"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734685.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_215160168.1"
/translation="MKTWIFTGICDKSDMLLYMCKILANGDNRVLLVDGAIDAKYKHC
IGVIHPQLPVMEFAGFDVATGFENYTSLMDYLEETDEKKYDYIVMDVEKTEFLDKMQW
DTADAHVWVSGFEVTGLRKSTALLDELRASRTDDPLPPFHRVYVQVIEDLMDETYIEG
YLEDSRIQWLGPPVKMPWDELFFALKIKNEHAGRLGIKPLSRQYKRSLTELLRLLTEM
EQRHIRRALRQAGRRHA"
gene complement(15613..16722)
/locus_tag="J7E85_RS18260"
/old_locus_tag="J7E85_18135"
CDS complement(15613..16722)
/locus_tag="J7E85_RS18260"
/old_locus_tag="J7E85_18135"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734684.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SAF domain-containing protein"
/protein_id="WP_215160170.1"
/translation="MPIIRRRSRKLIFAGLAGAAVTGAVCAGAMMYYVHGYKEQQSVE
RTKYEQRITELEETQLQQLNSMKVAWVPLKDIPPGHFIDAKDIKEVRLPDDGSSGNLF
SVKEEIAGKGAKIELLQGTPITRSMLFEEEPTPSDLRHREMKSVYLPSNLRQGDVIDV
RVQFPTGQDYIILSKKKIDKLQNPAFWTTLSEQEILLLSSALVDAYLHDATLYALTYV
EPELQDRAIPNYPPNAEVTKLITSNPNIVKKAEKFFEVTLRNTLEEDLKKLQPNQQAQ
VSDMHHNSIFASGARSPDSWSPASNISPQAKSSTDTEWNTADIRSDDETNTGTPLREE
RDSEAEQILGSSGSPESQNSSDKESPEAELIFSSP"
gene complement(16751..18217)
/locus_tag="J7E85_RS18265"
/old_locus_tag="J7E85_18140"
CDS complement(16751..18217)
/locus_tag="J7E85_RS18265"
/old_locus_tag="J7E85_18140"
/EC_number="2.7.11.1"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009596018.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA];
GO:0004674 - protein serine/threonine kinase activity
[Evidence IEA]"
/GO_process="GO:0006468 - protein phosphorylation
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="serine/threonine-protein kinase"
/protein_id="WP_215160172.1"
/translation="MNQPCRLVHGEVLGERYVIDRVIGEGGMSCVYLAEDLKLPGKKW
AVKECLSEPGMQRAVQDEAQLLIKLSHPRLPRIVDFFHVQDTGYTYLVMDYIQGMTLE
KYFRGYRGNVNPDFIMELTEQLLDVLEYLHHHEPQVIFRDLKPSNIMLTDQLEVRLID
FGIARSYKQESGEDTVKLGTVGFAAPEQYGGRQSDARSDLYGLGALLLYLSTGGKFSE
WITGVERHIRGDLPRELVPVIRKLLQYAPEHRYQSTVEVRSALNRQQSIAANIAGVQS
NTLAGTLVTAVLGTSSGVGTTHSCIAFGHYLASRYGKVAIVEMSAKSTAFTRIQEIAE
GGKLGSIRKFEINGIHFWRQTARTEVISLLGGSYDAVVLDLGAYRDSERLEEFLRADL
PIVIGSGAEWRQHDVVTLARMLLRHPQPARVYALPLAGEETIQEMRRALGTNKVYALP
LQLDPFEVPDSSREAFAQLFQDYLPPAERKRRFRFLKN"
gene complement(18377..19453)
/locus_tag="J7E85_RS18270"
/old_locus_tag="J7E85_18145"
CDS complement(18377..19453)
/locus_tag="J7E85_RS18270"
/old_locus_tag="J7E85_18145"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009596007.1"
/GO_function="GO:0008168 - methyltransferase activity
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SAM-dependent methyltransferase"
/protein_id="WP_215160174.1"
/translation="MDELNVMQEHEEQNQSHRDFHSKWVCTANHGFAPYAQEELRRMF
GSIKSTMMMPGEVFLATIGLSEEEAKRLITSQPPIFLRHLFPVHLEVTADTAAETLQA
VVEHVMKREEIGRSRVSIQIRKTENSSWKANPAALRDELQHRLAAMELEYTVQAPEWI
ISLFAADSVWYVGVSRPEDNLSDWNGGAVRFQREEGQISRAKFKLLEAEKQFGIPFDS
FRKAVDIGAAPGGWTSFLLERGLQVTAVDPAKMHPSLDGHKNLRVVHKNAADVSFREH
EFDLLVCDMSWSPKLMARMVTGLLHSLQTGGTAVITVKLLTKKPMALVKEIMSVFEES
RMQIQGAKQLFHNRDEITLYMIKY"
gene complement(19459..20232)
/locus_tag="J7E85_RS18275"
/old_locus_tag="J7E85_18150"
CDS complement(19459..20232)
/locus_tag="J7E85_RS18275"
/old_locus_tag="J7E85_18150"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013310533.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ATP-binding cassette domain-containing protein"
/protein_id="WP_215160176.1"
/translation="MISLQHVSLVRGNRHILDDVSIEMKSEQNWAILGRNGSGKTTLL
EMMTGYMFPSRGRVEVLGHVYGQCDVREVRKSIGYISQSLLEKLTLSDPVWEVVATGA
YAFLRFYQDIPEEARNLAYSLLNEMNFGHLAEQPLGTLSQGERKKVMLARSLMADPKI
LIMDEPCAGLDLYEREKMLQEIDNLRQREIMVVYVTHHIEEIVPLFTHVALMKDGRLT
GAGTKEEVLNHELIKQTYDIDAQLEWDGGRPWIKVISGG"
gene complement(20229..20576)
/locus_tag="J7E85_RS18280"
/old_locus_tag="J7E85_18155"
CDS complement(20229..20576)
/locus_tag="J7E85_RS18280"
/old_locus_tag="J7E85_18155"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734680.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="thioredoxin family protein"
/protein_id="WP_215160178.1"
/translation="MIEVTQRELTERLEWHERLTKRDANAEPVIVFLHTPLCGTCAAA
RKMIDIVEHVLPDVQLLEADVNFLPGIVERYQIRSVPALLAIQPSPLAAPEVLYRMGS
VQDIVSFVRSVRP"
gene complement(20573..20911)
/locus_tag="J7E85_RS18285"
/old_locus_tag="J7E85_18160"
CDS complement(20573..20911)
/locus_tag="J7E85_RS18285"
/old_locus_tag="J7E85_18160"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009595984.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="cyclic-phosphate processing receiver
domain-containing protein"
/protein_id="WP_215160180.1"
/translation="MIHLYLDDWRPNPKGFALARNGEECLLMLRECEVDVLSLDFELG
HDQMNGGDVVAAMIAENLQAKEIYLHTSSPSGRRKMYELLYEHMPKSVKVHNGPMPES
VLREVAQGSR"
gene complement(20929..21777)
/locus_tag="J7E85_RS18290"
/old_locus_tag="J7E85_18165"
CDS complement(20929..21777)
/locus_tag="J7E85_RS18290"
/old_locus_tag="J7E85_18165"
/EC_number="3.1.21.2"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734678.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA];
GO:0008270 - zinc ion binding [Evidence IEA]"
/GO_process="GO:0006281 - DNA repair [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="deoxyribonuclease IV"
/protein_id="WP_215160182.1"
/translation="MKSKVRIGSHVSTRGGFLAAAQHAAGIGSLAYQYFPKNPRSLHL
KTPDVRNAAACSKFCQEQVLVSIAHTPYPTNMAVGLTRGEEFYQLTVDSLKNDLMIAE
ACGSLGIVVHFGHLKSQDILEGYQNIIRCLNDVLASWTGRAKLLIENQAGDHGSMGMT
LEESVKVRQLADDPEKIGFCLDTCHLFAAGGWDISNTDELLARGKELAYWESTVAVHL
NDSKYGAGSRKDRHARIGQGMIGIEALKRLVLAPELAGKAFVLESEKGADGTHREDIA
KVLSWS"
gene complement(21767..22585)
/gene="mutM"
/locus_tag="J7E85_RS18295"
/old_locus_tag="J7E85_18170"
CDS complement(21767..22585)
/gene="mutM"
/locus_tag="J7E85_RS18295"
/old_locus_tag="J7E85_18170"
/EC_number="3.2.2.23"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734677.1"
/GO_component="GO:0005737 - cytoplasm [Evidence IEA]"
/GO_function="GO:0046872 - metal ion binding [Evidence
IEA]; GO:0008534 - oxidized purine nucleobase lesion DNA
N-glycosylase activity [Evidence IEA]"
/GO_process="GO:0006281 - DNA repair [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DNA-formamidopyrimidine glycosylase"
/protein_id="WP_215160184.1"
/translation="MPELPEMENYRRLLSQSILNVPITNVVVNREKSLNVTVDEFTSE
LKGSKVIFVERRGKHLIFHLHNGGRLLLHLMLGGILYLGHRDEERPSRSTQVEITFGE
QVLYFIGLRLGYLHFLTARETENALKELGPELLDRRMTKARFVERIGKRRGALKTTLV
NQQVVAGIGNCYADEIAFDAHIHPLSKIQDLSEQSLEQLYESAVKVMHEATDGGGYME
MPFQEGDTLTGAYNDECKVYDREGEPCVRCGTLIVKAEHTSRKVFFCPNCQHEV"
gene complement(22637..23431)
/locus_tag="J7E85_RS18300"
/old_locus_tag="J7E85_18175"
CDS complement(22637..23431)
/locus_tag="J7E85_RS18300"
/old_locus_tag="J7E85_18175"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734676.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="TIGR01457 family HAD-type hydrolase"
/protein_id="WP_076321152.1"
/translation="MEKPKPKGLLIDLDGTLYHGRHRIEGADLLIERLKELQIPFLYV
TNNSSRTPEQVAAHLMEMGIPALPEEVCTSSLAAAKYIAEKSPGAKVAMLGEVGLREA
LLSAGLNIVEQSPKYVIQGIDRSFDYEKLTRAVRWIQEGAVSILTNPDLQLPSDTGLM
PGAGSLGAAIEAASGVKPTVIGKPSSILMKFASDRLGLAPEDTYVIGDNIRTDIAAGA
HAGCKTVLVMTGITTDLNMEAHMEATGVTPDFICRDLSEVINLLCS"
gene complement(23802..24731)
/gene="rnz"
/locus_tag="J7E85_RS18305"
/old_locus_tag="J7E85_18180"
CDS complement(23802..24731)
/gene="rnz"
/locus_tag="J7E85_RS18305"
/old_locus_tag="J7E85_18180"
/EC_number="3.1.26.11"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734675.1"
/GO_function="GO:0016891 - RNA endonuclease activity,
producing 5'-phosphomonoesters [Evidence IEA]"
/GO_process="GO:0042780 - tRNA 3'-end processing [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ribonuclease Z"
/protein_id="WP_215160186.1"
/translation="MELYFLGTNAGVPTLQRNVTSIALRMLEERRSLWLFDCGEGTQH
QILKSPLKLSKLEKIFITHMHGDHVFGLPGLLSSRGAQGVTSPLTIYGPPGIKAFIET
TLNISQSRVPYTMEVIEHTGGVLFEDDNFLVESTKLDHRAESYGYRIVEKDLPGSLDL
KRLADYGLKPGPLYGKLKRGESVELGDGRWIHASEVLLTPKKGRVVTILGDTRPCPGV
ETLAKDADLLVHEATFMEDLSELAHEYYHSTAKQAAEAAKRAGVRTLFLTHFSSRYKD
MEHLQPLLKEAQEIFENTRLAEDFGLYPIQRKS"
gene complement(24818..28258)
/gene="metH"
/locus_tag="J7E85_RS18310"
/old_locus_tag="J7E85_18185"
CDS complement(24818..28258)
/gene="metH"
/locus_tag="J7E85_RS18310"
/old_locus_tag="J7E85_18185"
/EC_number="2.1.1.13"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_007129974.1"
/GO_function="GO:0031419 - cobalamin binding [Evidence
IEA]; GO:0008705 - methionine synthase activity [Evidence
IEA]; GO:0008270 - zinc ion binding [Evidence IEA]"
/GO_process="GO:0009086 - methionine biosynthetic process
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="methionine synthase"
/protein_id="WP_215160188.1"
/translation="MNKPSLQEILKERILILDGAMGTMIQQEDLSAEDFGGPDLDGCN
EMLVIHRPDVIQKIHEQYLEAGADLIETNTFGATSVVLAEYDIPELAREINLKAAHLA
RVAVDKYSTPDNPRYVVGAMGPTTKTLSVTGGVTFADLIESYEEQAVALIEGGVDALL
LETSQDTLNVKAGSIGIRQAFDKTGVMLPIMISGTIEPMGTTLAGQNIEAFYISLEHL
NPVSIGLNCATGPEFMRDHIRSLSEMSRSAISCYPNAGLPDENGQYHESPESLAQKMG
AFAEKGWLNIAGGCCGTTPDHIRALKQTMDGFSPRPLDGGHLPALSGIEPVYIEQENR
PYMVGERTNVLGSRKFKRLIVEGKYEEASEIARAQVKNGAHVIDVCVQDPDREESEDM
IKFLELVVKKVKVPLMIDTTDPAVIDLALQYSQGKAIINSINLEDGEEKFEHVIPLVH
KYGAAVVVGTIDETGQAIHRDDKLKVAQRSYDLLVNKYGVSPEDIIFDTLVFPVGTGD
EQYIGSAKETIEGIRIIKEAMPKVHTILGISNVSFGLPEAGREVLNSVYLYECTKAGL
DYAIVNTEKLERYASIPEEERRLAEDLIYRTNDETLAAFVAAFRDKKIEKKVKVSNLT
LEERLASYVVEGSKEGLIPDLDIALTKYGALEIINGPLMAGMTEVGRLFNNNELIVAE
VLQSAEVMKASVAYLESFMEKNETSVKGKIMLATVKGDVHDIGKNLVEIILSNNGYQI
INLGIKVPPEQIIEAYRREQPDAIGLSGLLVKSAQQMVSTAQDLKNAGISVPIMVGGA
ALTRKFTKTRIRPEYDGMVLYAKDAMDGLALANQLSDPVQRTRIAEEIKAEQEADAAA
PQVVKVMPKLSEGLRSKISTEAPVYLPPDMERHVLRNYPISHILPYINMQMLLGHHLG
LKGSVEQLLKANDPKAVSLKETVDGILEEAVQSGIIQAHAMYRFFPAQSRGNDILIYD
PKDTTKVLHTFTFPRQQVEPYLCLADFLKSVDSGVMDYVGFLVVTAGHGVGKLSGEWK
DKGDYLRSHALQSVALETAEGLAERIHHMMRDTWGYPDPADMTMKQRLGARYQGIRVS
FGYPACPDLEDQEPLFKLMQPEDIGVHLTEGFMMEPEASVSAMVFSHPEAHYFNVDKA
"
gene 28428..28964
/locus_tag="J7E85_RS18315"
/old_locus_tag="J7E85_18190"
CDS 28428..28964
/locus_tag="J7E85_RS18315"
/old_locus_tag="J7E85_18190"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009595976.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="cupin domain-containing protein"
/protein_id="WP_215160190.1"
/translation="MAEIVIRNTNERITGEDNVREFLNNQEVVYEHWNMEKLPAALQE
NFKLSDDDKKRILDIYDEEIRDLAARRGYKIWDVITLSESTPNIEDLLKKFEEVHTHA
EDEIRAIVGGKGIFIIKGSDDVGYFNVELEPGDVISVPENTPHFFTLMENKQIIAVRL
FIEENGWVATPVEDPQFQ"
gene complement(29055..29459)
/locus_tag="J7E85_RS18320"
/old_locus_tag="J7E85_18195"
CDS complement(29055..29459)
/locus_tag="J7E85_RS18320"
/old_locus_tag="J7E85_18195"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734672.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="FixH family protein"
/protein_id="WP_076321148.1"
/translation="MTRKKIALLAAMVLMAVALAACNDSKAESGEDVMAEPIIVELSL
TPESIKAGEKVLIEAKVTQAGSPVEDANNVEFEVTLEGGGVQAKVPVKHDQDGVYKME
KTFDEAGTYRIVSHVTARGQHSMPLKELKVTE"
gene complement(29739..30530)
/locus_tag="J7E85_RS18325"
/old_locus_tag="J7E85_18200"
CDS complement(29739..30530)
/locus_tag="J7E85_RS18325"
/old_locus_tag="J7E85_18200"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734671.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="HAD family hydrolase"
/protein_id="WP_215160192.1"
/translation="MPIAAVLFDLDDTLLWDERSVEEAFEVTCQAGANETGIDAKELL
AAVREEARALYESYDTFAFTKMIGINPFEGLWANFTAGSQPEFRKLQELAPVYRKESW
RRGLQRLGVDHETLAETLAAQFAAERRTRPYVYEETFEVLKELQGNVKLLLLTNGSPD
LQQEKLDGVPELVPYFDHIIISGDFGKGKPDVSIFEYALDLLGVEADQAVMVGDKLTT
DIKGGNAAGLHTVWINRVNRPHDPSIQPKFEIKHLSELHAIVASL"
gene complement(30573..31097)
/locus_tag="J7E85_RS18330"
/old_locus_tag="J7E85_18205"
CDS complement(30573..31097)
/locus_tag="J7E85_RS18330"
/old_locus_tag="J7E85_18205"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_009596012.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_215160195.1"
/translation="MSRSWERKVNKNMSQLNKQRKKQGLTSYQVSAVTDKHDVFKGRK
YVLPLVLVALAGVYALLGTATSEAAGGSNDVLNWVGVSLYILLALMIFLRKPYLKIER
ASVSTMKFNRERRLAVSDIEKIKLASGSVVIQGKGKAGNWVFSRMMNLYDTKAMGERL
EKFAKTHQIPVEHN"
gene complement(31258..31464)
/locus_tag="J7E85_RS18335"
/old_locus_tag="J7E85_18210"
CDS complement(31258..31464)
/locus_tag="J7E85_RS18335"
/old_locus_tag="J7E85_18210"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_007430663.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF896 domain-containing protein"
/protein_id="WP_076321145.1"
/translation="MDIDTLVERINVLARKQKSEGLTAEELKERAELREIYLNNIRGN
FRQQLESIEWVDENEQKGGPRLKH"
gene complement(31729..32097)
/locus_tag="J7E85_RS18340"
/old_locus_tag="J7E85_18215"
CDS complement(31729..32097)
/locus_tag="J7E85_RS18340"
/old_locus_tag="J7E85_18215"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734669.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="LysM peptidoglycan-binding domain-containing
protein"
/protein_id="WP_215160197.1"
/translation="MLKYSTYRSIYENVPVQTKSSETWIDQLKSRMASISFIKLLFVL
LIVASCWTGAYSVFAGGMDKPTGEKQVIVQYGDSLWRIASLQKPTDMDTRVYLDSIRR
MNGLKGPDIQAGEVLSLPVW"
gene 32273..32899
/gene="lexA"
/locus_tag="J7E85_RS18345"
/old_locus_tag="J7E85_18220"
CDS 32273..32899
/gene="lexA"
/locus_tag="J7E85_RS18345"
/old_locus_tag="J7E85_18220"
/EC_number="3.4.21.88"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_007430665.1"
/GO_function="GO:0004252 - serine-type endopeptidase
activity [Evidence IEA]"
/GO_process="GO:0045892 - negative regulation of
DNA-templated transcription [Evidence IEA]; GO:0009432 -
SOS response [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="transcriptional repressor LexA"
/protein_id="WP_076321144.1"
/translation="MSKISSRQLAILEFIRNEVRSKGYPPSVREIGEAVGLASSSTVH
GHLDRLEKKGLIRRDPTKPRAIELLGQEESESASLFTHTIARVPVVGKVTAGVPITAM
ENIEDYFPLPQHYVGDDKVFMLSVIGDSMIEAGIHSGDYVIVRQQQTADNGDIVVAMT
EEDEATVKTFYKEKDHVRLQPENPTYEPLRLNHVTILGKVIGLFRDVH"
gene complement(32994..33785)
/locus_tag="J7E85_RS18350"
/old_locus_tag="J7E85_18225"
CDS complement(32994..33785)
/locus_tag="J7E85_RS18350"
/old_locus_tag="J7E85_18225"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734668.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_215160199.1"
/translation="MNKGKPDWYSRVKKGPFPNDKFTPEMKKYVHMSVNCSGDGRPTQ
RKYLRIGIVGGLLLLIIFMIIPLTFGGEEQKRAGDAPPDTEETIRAQGVTDKGRLSVV
SVEKEKITKLGAPSCFGIETDLSFAGNYSVRYRSNGVTDEVTTLDDLTFIQPTSAAVN
MVRLPFQDADVFILAPQYQDCHAIQIYAFAVEHDTGKAVQLRFQEELSVSYTSYYRPG
TEPMVKDNKLVLQSTEGPGGEGSPDYKPKRMYRLDLKQGVMVLAN"
gene complement(33778..34314)
/locus_tag="J7E85_RS18355"
/old_locus_tag="J7E85_18230"
CDS complement(33778..34314)
/locus_tag="J7E85_RS18355"
/old_locus_tag="J7E85_18230"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015734667.1"
/GO_function="GO:0016987 - sigma factor activity [Evidence
IEA]"
/GO_process="GO:0006352 - DNA-templated transcription
initiation [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="RNA polymerase sigma factor"
/protein_id="WP_215160201.1"
/translation="MELEYLKQMTVMDTQTLDKIMNLYGNDIWNYAYFLTKQQALADD
IAQEVFIKAYYGIHTFRGRATLKTWLLTITRHTVFRYKQTFFFRKVTLKDKLLTDASS
RSAEAEYLDGQYTDEIWEVIMTLPRKFREVLILDLYYEMSINQIAEFLNLAAGTVKSR
LYRARKKVQNLLKENGDE"
gene complement(34386..>34913)
/locus_tag="J7E85_RS18360"
/old_locus_tag="J7E85_18235"
CDS complement(34386..>34913)
/locus_tag="J7E85_RS18360"
/old_locus_tag="J7E85_18235"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013310642.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS30 family transposase"
/protein_id="WP_215160202.1"
/translation="FLVGKPIGERPKVVKERTTFGHWELDTVVSSRGKSRACAATFIE
RKTRLYLAIKMPDRTAHSMEVAFGVAASQFPQGTFLTATADRGKEFACYASLESFYDL
SVYFADPYSSWQRGSNENGNGLLREFFPKGKDFAEVTDKDLAHAVYLINHRPRKCLGW
KSAHESFMDALSHLA"
CONTIG join(JAGGRD010000029.1:1..34913)
//