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NCBI Reference Sequence: NM_026492.4
FASTA Graphics
LOCUS NM_026492 879 bp mRNA linear ROD 08-AUG-2023 DEFINITION Mus musculus SSX member B1 (Ssxb1), mRNA. ACCESSION NM_026492 XM_906688 XM_919982 XM_919992 VERSION NM_026492.4 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 879) AUTHORS Chen YT, Alpen B, Ono T, Gure AO, Scanlan MA, Biggs WH 3rd, Arden K, Nakayama E and Old LJ. TITLE Identification and characterization of mouse SSX genes: a multigene family on the X chromosome with restricted cancer/testis expression JOURNAL Genomics 82 (6), 628-636 (2003) PUBMED 14611804 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX890632.7. On Mar 18, 2023 this sequence version replaced NM_026492.3. ##Evidence-Data-START## Transcript exon combination :: AK006218.1, AY244792.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-123 BX890632.7 109599-109721 124-250 BX890632.7 112166-112292 251-365 BX890632.7 112748-112862 366-455 BX890632.7 113166-113255 456-505 BX890632.7 113731-113780 506-581 BX890632.7 114386-114461 582-698 BX890632.7 117755-117871 699-879 BX890632.7 118275-118455 FEATURES Location/Qualifiers source 1..879 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="X" /map="X 3.81 cM" gene 1..879 /gene="Ssxb1" /gene_synonym="4930414C09Rik" /note="SSX member B1" /db_xref="GeneID:67985" /db_xref="MGI:MGI:1915235" exon 1..123 /gene="Ssxb1" /gene_synonym="4930414C09Rik" /inference="alignment:Splign:2.1.0" misc_feature 50..52 /gene="Ssxb1" /gene_synonym="4930414C09Rik" /note="upstream in-frame stop codon" exon 124..250 /gene="Ssxb1" /gene_synonym="4930414C09Rik" /inference="alignment:Splign:2.1.0" CDS 182..694 /gene="Ssxb1" /gene_synonym="4930414C09Rik" /note="synovial sarcoma, X member B, breakpoint 1" /codon_start=1 /product="synovial sarcoma, X member B1" /protein_id="NP_080768.1" /db_xref="CCDS:CCDS29997.1" /db_xref="GeneID:67985" /db_xref="MGI:MGI:1915235" /translation="METVSSCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQ KSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEVHDSEDECFEGSFGVT PIKRMKLTSVTISFHNVEGSLASGENDCNLAETGGIQVNVWSHRLRERKYRVIYSEIS DTEEEEDDDY" exon 251..365 /gene="Ssxb1" /gene_synonym="4930414C09Rik" /inference="alignment:Splign:2.1.0" exon 366..455 /gene="Ssxb1" /gene_synonym="4930414C09Rik" /inference="alignment:Splign:2.1.0" exon 456..505 /gene="Ssxb1" /gene_synonym="4930414C09Rik" /inference="alignment:Splign:2.1.0" exon 506..581 /gene="Ssxb1" /gene_synonym="4930414C09Rik" /inference="alignment:Splign:2.1.0" exon 582..698 /gene="Ssxb1" /gene_synonym="4930414C09Rik" /inference="alignment:Splign:2.1.0" exon 699..879 /gene="Ssxb1" /gene_synonym="4930414C09Rik" /inference="alignment:Splign:2.1.0" ORIGIN 1 agttacctga ggaattcaaa gggtttggct gccctggttg ctgagtctct agcaacagct 61 gaatcaaggt gcatatttgg gtctcttctt ggataaacac tcctttgtcc cttcctgtct 121 gagggcattt ggttttgtgc ttgaagaaga caagattgtg tcttttcaaa atcacactga 181 catggaaaca gtgagttcct gtgaaaaggt ccccatggaa gtgctttatg aaccaaagaa 241 tatctgcaag gcattccagg atatttctac atacttctct gatgaagagt ggggaaagct 301 gactcaatgg cagaaaagtg cctacgtgta catgaaaaga aactacatca gaatgactga 361 cctaggggtc accgtgaacc aaccagtttt catgcgcggc aaggagcagg ccaagcaatc 421 cctggtcgaa ggcattgaag ttcatgacag tgaagatgaa tgctttgaag gatcttttgg 481 tgtgacaccg ataaaacgaa tgaagctgac atcagtgaca ataagttttc ataatgtaga 541 aggaagcctt gcatctggag agaatgattg caacttggca gaaactggtg gcattcaggt 601 caatgtttgg agccaccggc tgcgagagag gaagtatcga gtgatatatt cagagattag 661 tgatactgaa gaggaagaag atgatgatta ctgaactgac agtctaaatg agcccacagt 721 ggaagaagga tggagtggcg actcaacatc acagctacag ctttgaaaga ctaaatatca 781 gcactataga tacatacatt tatttatata tttattgatg atatacactt atacctatat 841 tcatttattt ataaaagtct actggaattc tgagttaaa //
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