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PREDICTED: Homo sapiens Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), transcript variant X18, mRNA

NCBI Reference Sequence: XM_054364254.1

FASTA Graphics 

LOCUS       XM_054364254            6358 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens Ral GEF with PH domain and SH3 binding
            motif 1 (RALGPS1), transcript variant X18, mRNA.
ACCESSION   XM_054364254
VERSION     XM_054364254.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060933) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6358
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="9"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..6358
                     /gene="RALGPS1"
                     /gene_synonym="RALGEF2; RALGPS1A"
                     /note="Ral GEF with PH domain and SH3 binding motif 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 ESTs, 429 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 61 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:9649"
                     /db_xref="HGNC:HGNC:16851"
                     /db_xref="MIM:614444"
     CDS             297..1961
                     /gene="RALGPS1"
                     /gene_synonym="RALGEF2; RALGPS1A"
                     /codon_start=1
                     /product="ras-specific guanine nucleotide-releasing factor
                     RalGPS1 isoform X15"
                     /protein_id="XP_054220229.1"
                     /db_xref="GeneID:9649"
                     /db_xref="HGNC:HGNC:16851"
                     /db_xref="MIM:614444"
                     /translation="MYKRNGLMASVLVTSATPQGSSSSDSLEGQSCDYASKSYDAVVF
                     DVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQKL
                     LELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREY
                     IRSLKMVPSIPYLGIYLLDLIYIDSAYPASGSIMENEQRSNQMNNILRIIADLQVSCS
                     YDHLTTLPHVQKYLKSVRYIEELQKFVEDDNYKLSLRIEPGSSSPRLVSSKEDLAGPS
                     AGSGSARFSRRPTCPDTSVAGSLPTPPVPRHRKSHSLGNNMMCQLSVVESKSATFPSE
                     KARHLLDDSVLESRSPRRGLALTSSSAVTNGLSLGSSESSEFSEEMSSGLERGRLYAT
                     LGPNWRVPVRNSPRTRSCVYSPTGPCICSLGNSAAVPTMEGPLRRKTLLKEGRKPALS
                     SWTRYWVILSGSTLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQ
                     LNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSNRPQVPANLMSFE"
ORIGIN      
        1 aggccctgga gcggacggtt cctactgcgg ctgggcaccg gctccgctcc cgcgtctgcc
       61 cgcgctccag ctgcgcctgg cccggccccg gcccggctcg gcgtggcccc ggcctccaag
      121 cgaaggcgcc gctgccgctg ggccgctccc agggccatga ggaagcggcg gcagccactg
      181 cggcccgcgt caaggtgacc ggccgggact gcggcggcgg ggagagcggc ggacttctcc
      241 agacaggtta tgttacctgc agaggctgcc ctgaagctcc ctgtggcctg gagactatgt
      301 acaagaggaa tggtctgatg gctagcgtgt tggtcacctc tgccactcca cagggcagca
      361 gcagctcgga ctctctggag ggccagagct gcgactatgc cagcaagagc tatgatgccg
      421 ttgtcttcga tgtcttgaaa gtgaccccag aggagtttgc tagccagatt acattaatgg
      481 atatacctgt gtttaaagct atccagccgg aggaactagc cagctgtgga tggagtaaga
      541 aggagaaaca cagtcttgcc cctaacgttg tggcctttac ccggaggttt aaccagaaac
      601 ttctagaact caacaacctt cattctctca tgtctgtggt atcagcatta caaagtgctc
      661 ccatcttcag gctgacaaaa acctgggctc ttttaaatcg aaaagacaag actacctttg
      721 agaaattgga ctacctgatg tcgaaagaag ataattacaa gcggacacgg gaatatatcc
      781 gaagcctgaa gatggttcca agtattccct atctaggaat ctatcttctg gatttaatct
      841 acattgattc tgcatatcct gcctcaggca gtatcatgga aaatgaacaa agatccaatc
      901 agatgaacaa tattcttcga ataattgctg atttacaagt ttcctgcagc tatgatcacc
      961 tcaccaccct gccccatgtg cagaagtacc tgaagtccgt acgctacatt gaagagctcc
     1021 agaagtttgt ggaagacgac aactacaaac tgtcgctcag aatcgaacca ggaagcagct
     1081 ctccaagact agtctcttcc aaggaagatc ttgcaggtcc ctctgctggc tccggttctg
     1141 cgaggttcag ccggaggccc acctgtcctg acacatctgt tgctggcagc ctccccacac
     1201 ctccagtccc cagacacagg aagagccaca gcctaggcaa caatatgatg tgtcagttga
     1261 gtgtagttga gagtaaaagt gcgacattcc catcggagaa agcaaggcac ctactggacg
     1321 acagtgtcct agagtcccgc agcccccgaa ggggcctggc tctgacctcc tcctctgctg
     1381 tcaccaatgg actctcccta ggcagtagtg agagctcaga gtttagtgaa gagatgtctt
     1441 cagggctgga aaggggacgt ctctatgcca ccctggggcc caactggcgg gttccagtta
     1501 ggaattctcc cagaacccgg agctgtgtct acagccccac cggcccgtgc atctgttctc
     1561 tggggaactc cgcagctgtg cccaccatgg aggggcctct gagaagaaaa accctgctca
     1621 aggaagggcg gaagcctgcg ctgtcctcgt ggaccaggta ctgggtcata ctctcaggat
     1681 ccaccctcct gtactacgga gccaagtcct tgcggggcac agacagaaaa cactataaat
     1741 ccacacctgg caaaaaggtt tccatcgtgg gctggatggt gcagctgccc gatgaccccg
     1801 agcacccaga tatcttccag ctgaacaacc ctgacaaagg caatgtttac aagtttcaga
     1861 ctggttcccg atttcatgca atactgtggc acaagcattt ggatgatgca tgtaaaagca
     1921 acaggcctca ggtacctgca aaccttatgt catttgagta agtctctgca ggacgtggca
     1981 tgacttcaga ggcttctggg aacccaggct gggcctggtg gtgaagagca gtcctgggca
     2041 caggctgtga gccagggtgc tgggaaactc acagctggac tcaggggaca cggcctgtgg
     2101 cctcaccatc ccagagggct tcaccagtgt gggatccacc tgtcagtccc cagcgactct
     2161 catgacactc attctgcagc accgcctctt ggggcagtgg tcagacccca cacgccctct
     2221 ctgggcccac cacctgcatc tgcgactaga gagcacccgg cccacgttgg gttctcagtg
     2281 ctttctactg cacagagtgg acagcgctaa ctaacctgtg agaggggccc gagagaagga
     2341 acagctgtgg aacaggcttt ttacacccca agtgcatggg gttgctcgcc cacagggctg
     2401 cctcagattt tgtacaaccc cgaagcgtcc tctgcgtgtg cgtgctgtac gtgtgtgtgt
     2461 gtgtgtgagc gagtgtgaac tcttcaagaa acatgcattt tggcacaaga ctcgtgacat
     2521 cacacacttc attcgctttg aggccctgct ttaaccttaa gttatagccc tgtccaccga
     2581 ggaaggtcag ggtgagagcc tagattcctc ctgtgtcaag ggtccctcgc attcttttac
     2641 tgtaaacaaa caatgcctta aattgtgtct tgttttctgt tcctatgggt gctattcatc
     2701 tggaaggcct gcttccaggc ctctttgctg tcagcccttc tgagacagga cctggcttca
     2761 ggactgtgga ctgggctgct ggcctgcttg cttcctccct tccccattcc tagcagggcc
     2821 tgaggccctc ctcttctcgc ccttcccacc atgccagaat gggaagttgt gacgttgcag
     2881 ctccaaccga cgtgctcata gtgatcagct gtgcaggagc catgaggcac caacctctcc
     2941 ccgcagggca aagcctgtgc ccccatcatc tcactccttt gcctgcactg ccagggtggg
     3001 gcccaccaag attcctgatc atgacgggaa gctgagtgac cctgaggcct taagcttccc
     3061 cagtcttggc cccaaatgca gtcaccagca agttttccat tttccaagtc caagggcaca
     3121 attgttgatg accgtgtgac aatagagcga agccccgggg agtgaacggt ccaacctctg
     3181 cattcagtta ggagctcttc acatgaatca catccttatc tgtcaccttg tgtcacattt
     3241 taaagtgact tttattttgc acaaataatt tttattcaga ataataaatc actctttatc
     3301 atagtatctt ctcttccctc ttccccttta gtttggatag cctaactctg agaagttaac
     3361 ccttaaacag ttttctggaa gagactgaat ttctgggtcc ttgcagctgt gatggtttca
     3421 gagctcagac tgatcaggca tcaagctacc ctcaagagtt tctgggctgg atgtttcaga
     3481 acaacatcta caccagtaaa gtgtaatagg tcagtttcaa aacgaccaaa agacccacca
     3541 ctgtattttg accaaataat gacaacttct ttagaaattt gaatggcttg gtgaggaaag
     3601 tagttgtcac cagggcctca ttttgtagtt gagccttaca atgcttagta gttcatcttc
     3661 tttttgagca aagactagaa tactttcctc ctaagagaaa ctcccaggtg ataaaagttg
     3721 atgccatcaa accttgacac cgggtgctct gcacacccac gcggatgttg cacctcattc
     3781 tcccgatgac tattcaaatc agcatctaga ggctgaatga caatgccaaa cactccacct
     3841 ctgatcagaa ccatgcagtg ttaacacttt aacctacatt gaatctgatt ctacctgtta
     3901 acttttaaaa agtcgtaagt ttggatgaaa gtgcaagatg tggaacatca actacctatt
     3961 ttccttgggt ttttccactc tgcaaactgt cctggttttt cacaccaatg aagtattata
     4021 gatgccaatc caaaacctca gaatttcagg caccacaaaa acaggtaatt ttctatccct
     4081 tataagtttg tcttttcttt cagaaacatc tcttagccta atttgaaata gcacaatcac
     4141 aattcaaaat gtttagtctt ctcactaatt gagtctgctt ccacgtcctc tcccaggaac
     4201 attcttagct cggactcttg aagaatctct ttagattttg ttggcaaaag ccttatagaa
     4261 gcagtaagag gcttgaccac gccggaagag tcctggagct aaagctggaa gacactcagc
     4321 tctctaagca ggggctcggc caaacatggg agttaagtgc tgcttgtctt cccagtgttg
     4381 gtttgaaccc tgtgagcctg agacagagag ggccaggcac caaccacaag gcgggaaagt
     4441 ccatgggtag accctccccc tggagggaag catttctagt ttttgctcct tgactgtcca
     4501 gagtgtacaa atgttcataa cgccattgaa gggattattt cttgcatgca tatgctgaat
     4561 ttttttaagc aaatggatca tggcacccca aaatgaaagt tatagaaagc tgtctacaac
     4621 tgtggagttg gtagctggta acattgttgt ctcaagaaca actcacctct ctccctagga
     4681 ctaatttttg tctctctcag ttgaacatgt tttgtcattc aagatcagtc aggtgcattc
     4741 tggcaactga catacttgat ggaggattga ttcggtagag agcagtagaa atcttgttct
     4801 aactgtgcct ggtgagagac tttggccccc tccctcccta taaggctgtg gaacctgagg
     4861 aagtagatac ttgaagagat tctgtttagg aagaaactca ctctcttttg ccagttgaat
     4921 ttatagagca ttttttttct taccaagatg gccagtatca ttttaccccc acctcccaag
     4981 ccccaagagg tgtacctttt cagatgccat tttacaggcg gaaatgctcc atgaaacagg
     5041 aagccacttg caagcaacat ctgctctgtt cctcaggtgg ggcccagagc ccttccccga
     5101 gactgctgat gtctgtaacc actggggagc actgccaaaa atacagcttt ctggtttgtg
     5161 agcccataaa tgacttaaat cagctttaca tcatttttac atatcaagtg gtttcatgtt
     5221 aaaaaacaaa ctcctagtcc tttagaaata acagattctc tgcacaaaac cacccattca
     5281 ttcatttatt cattcacagc actagcaagt gctgcctatg ctgagaacaa gtcagatctg
     5341 atccctgccc tcatggacct gaccactcaa caaacagtcc ccaccacacc tatctcctta
     5401 ggcaagactt tgcctctctc ctagtcctga gtataaatcc tgtgcataga ttcctctaga
     5461 aaggcatcaa aaggctcaac agactgaatg gcctcttggt ctgcgaaaat tcagttgcaa
     5521 tgaggatgaa gtcactatcc tagaggctgc ttggcccaga agagccaggc acagagctgc
     5581 agttgggcac gccaaggatt ccaaaggtgg aatgagagag tagggtcaaa ctgtcacagt
     5641 atctgctcca taggtttctg tttttaattt caatgttaaa tacaactaca atatgagcga
     5701 gaactgcatt ttcttgggtg ttgagaactt gtaccatgga cttcagaccg ccttgcagcc
     5761 gtatgctgca caagcgtgta caccccctgg gcagcctcaa aaccccgctt acagcagcaa
     5821 cacaggagat catctgtcca ttttagaacc attaatctct ttatccattg ctgaacgact
     5881 gtgactattc agtaacgaag taatagtaat taattagtat ggtataatct ttaataaatt
     5941 tcgtgccaaa atgcatggtt ttccacttag cattcaaaat gttgcataga gagtagtttt
     6001 caatttctta tgtactcttc gaagtaagtt gaaaatcagt ttctacattt taattcgttt
     6061 cctgttaaat ctgttgcact ctcctgggct gtctttttct ccagcagacc cctgcatgca
     6121 gttgtgtaag gactttctct aattcttgtg aatcgtctca cccgcagtaa ccactgaacg
     6181 tcaatcagcc ctccatgggg ttctttcgat ttttggtgaa gtattttgtt acctcagtct
     6241 tgtatcaagt tgctgtattt ttcagcttgt tacattgata ataattattt cactaattaa
     6301 atactttaat gtacaaacat ctttgtttac tttgaaatta aatgtgtttt ccaatgaa
//
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Reference sequence information

  • RefSeq alternative splicing
    See 99 reference mRNA sequence splice variants for the RALGPS1 gene.
  • RefSeq protein product
    See the reference protein sequence for ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X15 (XP_054220229.1).

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