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NCBI Reference Sequence: XM_054364254.1
FASTA Graphics
LOCUS XM_054364254 6358 bp mRNA linear PRI 26-AUG-2024 DEFINITION PREDICTED: Homo sapiens Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), transcript variant X18, mRNA. ACCESSION XM_054364254 VERSION XM_054364254.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060933) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/23/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6358 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="9" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..6358 /gene="RALGPS1" /gene_synonym="RALGEF2; RALGPS1A" /note="Ral GEF with PH domain and SH3 binding motif 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 429 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns" /db_xref="GeneID:9649" /db_xref="HGNC:HGNC:16851" /db_xref="MIM:614444" CDS 297..1961 /gene="RALGPS1" /gene_synonym="RALGEF2; RALGPS1A" /codon_start=1 /product="ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X15" /protein_id="XP_054220229.1" /db_xref="GeneID:9649" /db_xref="HGNC:HGNC:16851" /db_xref="MIM:614444" /translation="MYKRNGLMASVLVTSATPQGSSSSDSLEGQSCDYASKSYDAVVF DVLKVTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKHSLAPNVVAFTRRFNQKL LELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREY IRSLKMVPSIPYLGIYLLDLIYIDSAYPASGSIMENEQRSNQMNNILRIIADLQVSCS YDHLTTLPHVQKYLKSVRYIEELQKFVEDDNYKLSLRIEPGSSSPRLVSSKEDLAGPS AGSGSARFSRRPTCPDTSVAGSLPTPPVPRHRKSHSLGNNMMCQLSVVESKSATFPSE KARHLLDDSVLESRSPRRGLALTSSSAVTNGLSLGSSESSEFSEEMSSGLERGRLYAT LGPNWRVPVRNSPRTRSCVYSPTGPCICSLGNSAAVPTMEGPLRRKTLLKEGRKPALS SWTRYWVILSGSTLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQ LNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSNRPQVPANLMSFE" ORIGIN 1 aggccctgga gcggacggtt cctactgcgg ctgggcaccg gctccgctcc cgcgtctgcc 61 cgcgctccag ctgcgcctgg cccggccccg gcccggctcg gcgtggcccc ggcctccaag 121 cgaaggcgcc gctgccgctg ggccgctccc agggccatga ggaagcggcg gcagccactg 181 cggcccgcgt caaggtgacc ggccgggact gcggcggcgg ggagagcggc ggacttctcc 241 agacaggtta tgttacctgc agaggctgcc ctgaagctcc ctgtggcctg gagactatgt 301 acaagaggaa tggtctgatg gctagcgtgt tggtcacctc tgccactcca cagggcagca 361 gcagctcgga ctctctggag ggccagagct gcgactatgc cagcaagagc tatgatgccg 421 ttgtcttcga tgtcttgaaa gtgaccccag aggagtttgc tagccagatt acattaatgg 481 atatacctgt gtttaaagct atccagccgg aggaactagc cagctgtgga tggagtaaga 541 aggagaaaca cagtcttgcc cctaacgttg tggcctttac ccggaggttt aaccagaaac 601 ttctagaact caacaacctt cattctctca tgtctgtggt atcagcatta caaagtgctc 661 ccatcttcag gctgacaaaa acctgggctc ttttaaatcg aaaagacaag actacctttg 721 agaaattgga ctacctgatg tcgaaagaag ataattacaa gcggacacgg gaatatatcc 781 gaagcctgaa gatggttcca agtattccct atctaggaat ctatcttctg gatttaatct 841 acattgattc tgcatatcct gcctcaggca gtatcatgga aaatgaacaa agatccaatc 901 agatgaacaa tattcttcga ataattgctg atttacaagt ttcctgcagc tatgatcacc 961 tcaccaccct gccccatgtg cagaagtacc tgaagtccgt acgctacatt gaagagctcc 1021 agaagtttgt ggaagacgac aactacaaac tgtcgctcag aatcgaacca ggaagcagct 1081 ctccaagact agtctcttcc aaggaagatc ttgcaggtcc ctctgctggc tccggttctg 1141 cgaggttcag ccggaggccc acctgtcctg acacatctgt tgctggcagc ctccccacac 1201 ctccagtccc cagacacagg aagagccaca gcctaggcaa caatatgatg tgtcagttga 1261 gtgtagttga gagtaaaagt gcgacattcc catcggagaa agcaaggcac ctactggacg 1321 acagtgtcct agagtcccgc agcccccgaa ggggcctggc tctgacctcc tcctctgctg 1381 tcaccaatgg actctcccta ggcagtagtg agagctcaga gtttagtgaa gagatgtctt 1441 cagggctgga aaggggacgt ctctatgcca ccctggggcc caactggcgg gttccagtta 1501 ggaattctcc cagaacccgg agctgtgtct acagccccac cggcccgtgc atctgttctc 1561 tggggaactc cgcagctgtg cccaccatgg aggggcctct gagaagaaaa accctgctca 1621 aggaagggcg gaagcctgcg ctgtcctcgt ggaccaggta ctgggtcata ctctcaggat 1681 ccaccctcct gtactacgga gccaagtcct tgcggggcac agacagaaaa cactataaat 1741 ccacacctgg caaaaaggtt tccatcgtgg gctggatggt gcagctgccc gatgaccccg 1801 agcacccaga tatcttccag ctgaacaacc ctgacaaagg caatgtttac aagtttcaga 1861 ctggttcccg atttcatgca atactgtggc acaagcattt ggatgatgca tgtaaaagca 1921 acaggcctca ggtacctgca aaccttatgt catttgagta agtctctgca ggacgtggca 1981 tgacttcaga ggcttctggg aacccaggct gggcctggtg gtgaagagca gtcctgggca 2041 caggctgtga gccagggtgc tgggaaactc acagctggac tcaggggaca cggcctgtgg 2101 cctcaccatc ccagagggct tcaccagtgt gggatccacc tgtcagtccc cagcgactct 2161 catgacactc attctgcagc accgcctctt ggggcagtgg tcagacccca cacgccctct 2221 ctgggcccac cacctgcatc tgcgactaga gagcacccgg cccacgttgg gttctcagtg 2281 ctttctactg cacagagtgg acagcgctaa ctaacctgtg agaggggccc gagagaagga 2341 acagctgtgg aacaggcttt ttacacccca agtgcatggg gttgctcgcc cacagggctg 2401 cctcagattt tgtacaaccc cgaagcgtcc tctgcgtgtg cgtgctgtac gtgtgtgtgt 2461 gtgtgtgagc gagtgtgaac tcttcaagaa acatgcattt tggcacaaga ctcgtgacat 2521 cacacacttc attcgctttg aggccctgct ttaaccttaa gttatagccc tgtccaccga 2581 ggaaggtcag ggtgagagcc tagattcctc ctgtgtcaag ggtccctcgc attcttttac 2641 tgtaaacaaa caatgcctta aattgtgtct tgttttctgt tcctatgggt gctattcatc 2701 tggaaggcct gcttccaggc ctctttgctg tcagcccttc tgagacagga cctggcttca 2761 ggactgtgga ctgggctgct ggcctgcttg cttcctccct tccccattcc tagcagggcc 2821 tgaggccctc ctcttctcgc ccttcccacc atgccagaat gggaagttgt gacgttgcag 2881 ctccaaccga cgtgctcata gtgatcagct gtgcaggagc catgaggcac caacctctcc 2941 ccgcagggca aagcctgtgc ccccatcatc tcactccttt gcctgcactg ccagggtggg 3001 gcccaccaag attcctgatc atgacgggaa gctgagtgac cctgaggcct taagcttccc 3061 cagtcttggc cccaaatgca gtcaccagca agttttccat tttccaagtc caagggcaca 3121 attgttgatg accgtgtgac aatagagcga agccccgggg agtgaacggt ccaacctctg 3181 cattcagtta ggagctcttc acatgaatca catccttatc tgtcaccttg tgtcacattt 3241 taaagtgact tttattttgc acaaataatt tttattcaga ataataaatc actctttatc 3301 atagtatctt ctcttccctc ttccccttta gtttggatag cctaactctg agaagttaac 3361 ccttaaacag ttttctggaa gagactgaat ttctgggtcc ttgcagctgt gatggtttca 3421 gagctcagac tgatcaggca tcaagctacc ctcaagagtt tctgggctgg atgtttcaga 3481 acaacatcta caccagtaaa gtgtaatagg tcagtttcaa aacgaccaaa agacccacca 3541 ctgtattttg accaaataat gacaacttct ttagaaattt gaatggcttg gtgaggaaag 3601 tagttgtcac cagggcctca ttttgtagtt gagccttaca atgcttagta gttcatcttc 3661 tttttgagca aagactagaa tactttcctc ctaagagaaa ctcccaggtg ataaaagttg 3721 atgccatcaa accttgacac cgggtgctct gcacacccac gcggatgttg cacctcattc 3781 tcccgatgac tattcaaatc agcatctaga ggctgaatga caatgccaaa cactccacct 3841 ctgatcagaa ccatgcagtg ttaacacttt aacctacatt gaatctgatt ctacctgtta 3901 acttttaaaa agtcgtaagt ttggatgaaa gtgcaagatg tggaacatca actacctatt 3961 ttccttgggt ttttccactc tgcaaactgt cctggttttt cacaccaatg aagtattata 4021 gatgccaatc caaaacctca gaatttcagg caccacaaaa acaggtaatt ttctatccct 4081 tataagtttg tcttttcttt cagaaacatc tcttagccta atttgaaata gcacaatcac 4141 aattcaaaat gtttagtctt ctcactaatt gagtctgctt ccacgtcctc tcccaggaac 4201 attcttagct cggactcttg aagaatctct ttagattttg ttggcaaaag ccttatagaa 4261 gcagtaagag gcttgaccac gccggaagag tcctggagct aaagctggaa gacactcagc 4321 tctctaagca ggggctcggc caaacatggg agttaagtgc tgcttgtctt cccagtgttg 4381 gtttgaaccc tgtgagcctg agacagagag ggccaggcac caaccacaag gcgggaaagt 4441 ccatgggtag accctccccc tggagggaag catttctagt ttttgctcct tgactgtcca 4501 gagtgtacaa atgttcataa cgccattgaa gggattattt cttgcatgca tatgctgaat 4561 ttttttaagc aaatggatca tggcacccca aaatgaaagt tatagaaagc tgtctacaac 4621 tgtggagttg gtagctggta acattgttgt ctcaagaaca actcacctct ctccctagga 4681 ctaatttttg tctctctcag ttgaacatgt tttgtcattc aagatcagtc aggtgcattc 4741 tggcaactga catacttgat ggaggattga ttcggtagag agcagtagaa atcttgttct 4801 aactgtgcct ggtgagagac tttggccccc tccctcccta taaggctgtg gaacctgagg 4861 aagtagatac ttgaagagat tctgtttagg aagaaactca ctctcttttg ccagttgaat 4921 ttatagagca ttttttttct taccaagatg gccagtatca ttttaccccc acctcccaag 4981 ccccaagagg tgtacctttt cagatgccat tttacaggcg gaaatgctcc atgaaacagg 5041 aagccacttg caagcaacat ctgctctgtt cctcaggtgg ggcccagagc ccttccccga 5101 gactgctgat gtctgtaacc actggggagc actgccaaaa atacagcttt ctggtttgtg 5161 agcccataaa tgacttaaat cagctttaca tcatttttac atatcaagtg gtttcatgtt 5221 aaaaaacaaa ctcctagtcc tttagaaata acagattctc tgcacaaaac cacccattca 5281 ttcatttatt cattcacagc actagcaagt gctgcctatg ctgagaacaa gtcagatctg 5341 atccctgccc tcatggacct gaccactcaa caaacagtcc ccaccacacc tatctcctta 5401 ggcaagactt tgcctctctc ctagtcctga gtataaatcc tgtgcataga ttcctctaga 5461 aaggcatcaa aaggctcaac agactgaatg gcctcttggt ctgcgaaaat tcagttgcaa 5521 tgaggatgaa gtcactatcc tagaggctgc ttggcccaga agagccaggc acagagctgc 5581 agttgggcac gccaaggatt ccaaaggtgg aatgagagag tagggtcaaa ctgtcacagt 5641 atctgctcca taggtttctg tttttaattt caatgttaaa tacaactaca atatgagcga 5701 gaactgcatt ttcttgggtg ttgagaactt gtaccatgga cttcagaccg ccttgcagcc 5761 gtatgctgca caagcgtgta caccccctgg gcagcctcaa aaccccgctt acagcagcaa 5821 cacaggagat catctgtcca ttttagaacc attaatctct ttatccattg ctgaacgact 5881 gtgactattc agtaacgaag taatagtaat taattagtat ggtataatct ttaataaatt 5941 tcgtgccaaa atgcatggtt ttccacttag cattcaaaat gttgcataga gagtagtttt 6001 caatttctta tgtactcttc gaagtaagtt gaaaatcagt ttctacattt taattcgttt 6061 cctgttaaat ctgttgcact ctcctgggct gtctttttct ccagcagacc cctgcatgca 6121 gttgtgtaag gactttctct aattcttgtg aatcgtctca cccgcagtaa ccactgaacg 6181 tcaatcagcc ctccatgggg ttctttcgat ttttggtgaa gtattttgtt acctcagtct 6241 tgtatcaagt tgctgtattt ttcagcttgt tacattgata ataattattt cactaattaa 6301 atactttaat gtacaaacat ctttgtttac tttgaaatta aatgtgtttt ccaatgaa //
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