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Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130308G17 product:unclassifiable, full insert sequence

GenBank: AK053784.1

FASTA Graphics 

LOCUS       AK053784                3852 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130308G17 product:unclassifiable, full insert
            sequence.
ACCESSION   AK053784
VERSION     AK053784.1
KEYWORDS    HTC; HTC_FLI; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
   PUBMED   10349636
REFERENCE   2
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   3
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
            Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
            Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
            Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
            Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
            Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
            Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   4
  AUTHORS   Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
            Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
            Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
            Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
            Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
            Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
            Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
            Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
            Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
            Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
            Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
            Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
            Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
            Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
            Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
            Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
            Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
            Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
            and Hayashizaki,Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5
  AUTHORS   Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
            Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
            Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
            Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
            Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
            Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
            Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
            Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
            Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
            Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
            Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
            Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
            Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
            Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
            Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
            Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
            Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
            Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
            Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
            Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
            Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
            Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
            Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
            Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
            Rogers,J., Birney,E. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   6
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
REFERENCE   7
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   8  (bases 1 to 3852)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
            Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
            Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
            Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
            Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
            Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2001) Contact:Yoshihide Hayashizaki The Institute
            of Physical and Chemical Research (RIKEN), Omics Science Center,
            RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
            Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=E130308G17.
FEATURES             Location/Qualifiers
     source          1..3852
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="FANTOM_DB:E130308G17"
                     /db_xref="MGI:MGI:2425648"
                     /db_xref="taxon:10090"
                     /clone="E130308G17"
                     /tissue_type="eyeball"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /dev_stage="0 day neonate"
     misc_feature    1..3852
                     /note="putative;
                     unclassifiable"
ORIGIN      
        1 gatataactg gagcctctgc cgggggaaga cgcagagcgc cgctgggctg ccgggtctcc
       61 tgcctcctcc tgctcctagg gcctcctgca tgagggagcg gtagagaccc ggacccgctc
      121 cgtgctctgc cgcctcgctg cgcttcgccc gggccaggct ctgccaggcc tcgcggtgag
      181 ccatgatccg cctcggggct ccccagtcgc tggtgctgct gacgctgctc atcgccgcgg
      241 tcctacggtg tcagggccag gatgcccgta agtcgcccgc cgcccctgcc tacttccctg
      301 acttgtgacc cttttcctcc tactccctcc cccaagtact ggtccgggtt agggcgctaa
      361 gtcctaagcg cagagtatac aggagtacac tgatcctaat tctgcgagta aggacctctg
      421 tcgcagcatc ttcagtgaga gtcacgattg gagactttct caggtccctg cgttaagcaa
      481 ggatatgcaa caggtttgaa cacagacgca tcaccttcca ccagctttga ccaggacgtt
      541 tcgagctcag taaaagaagc cccacactta aaagtaggag agaaatcgag agacgcctac
      601 gggttgattt atcagcctag tctaggggtt agacgctgca gaactcaaag gggcgctaga
      661 caaagaacta actctgaccc tgatgggttg aaatctgagg ccacaaagaa aaagcggctc
      721 ccggcgactt cagcgcagct ctccagtccc ctccgctatc aggctggccc acagtaaggt
      781 gcagccgggc agcccttctt tgaaactcgg ctctcccctt gcctccgtta ggctgcagga
      841 atttgacact gaaaaacgtt gacattgcaa acagacctgc tttccaaatg tgtccccaag
      901 agcacccacc cgcacacaca cacactgtat accctacaat gagttacttt acagcgtgtg
      961 tagccgtgga tggatatggg gtcaggctag tgacctgcgt atggctatcg ttagaggtgg
     1021 cagctgtata gcctcggtcc aagggcggtt cccgcacctt tccatctcct ccctgggtaa
     1081 gatccactgt ctgggattat attcaggaca accgaagcct ggaaagtgta ttaggtagag
     1141 aattttcttc cacgtgtttg ggcacgtttc cgacgggtag ggttccagcc ctgctctttc
     1201 tctgtatgtt acagactgtt aatcaatcgc aggtgaaact gtttggacag taggtgggga
     1261 tcaaagaccc tctgcccgtg agactctgtg ctctttcccc tgccaccagg ctgtctccag
     1321 agatgcttta caaggaggcg ggcccgggcg gactttttgc tctttagctt ggcggacccg
     1381 gcggggggca gggctagagc ggggagcgct gccgcgagaa gcccgggata gcactttccg
     1441 accccgccgc gcagggtggc agggtggcga gctaagccag agtcctgcgt tcgagctctg
     1501 ggggcggggg tgggggggca tcgaagtgtt tgtatgtggt ctgagatagg cctgactgta
     1561 ttttttgtcc taaactttca agcacacacc ccacaaagct gcggtcttga ccggtgttct
     1621 ttatggagcg cagtggagtg aactgagcgt cttaacgctt tctcgaattc ttcatctgat
     1681 agcagaggcg ctcgcttaag tgtcaaagag ctctctctca ctgctgcaac ctttttgaca
     1741 gagtgaattc cacagctttg tatgagtgtg ggtgggtggg gggaggttgt ctaaaacttt
     1801 cggtctctta cgattctgca tctgaccatg cccccccccc ccaaaaaaaa atcgttggtt
     1861 ttacacccca gcttgcctca ccaatggcag acaccccaca ctctagcctt ggatccacag
     1921 gacccaaaga cctgacgtgg ggcaaggcgt agcctgtgtg gacgttagga atgtcagaaa
     1981 cctagagtcc accgcgctcc tcctctccat ctttccacga gtttgggaaa cttgttggcc
     2041 gcgaagacat tgacccacat ctgcatttct cagccctagc cttccaaaag tgctgctggt
     2101 tcgggagggg agacctcagt cctcctttgt gagacttgtt tgcgttgggg gattggcagc
     2161 gatggcttcc agatgggctg aaaccctgcc cgtatttatt taaactggtt cctcgtggag
     2221 agctgtgaat cgggctctgt atgcgcttga gaaaagcccc attcatgaga ggcaaggccc
     2281 agtgggtccc ccaactcccc gacccccctc tcccacaatg cacagcctcc ccgccctcat
     2341 ccccccccca ccccccgtgc ccgcctgccg ccacctcccg ggctccagcc ccgcgcacag
     2401 cggcgacgaa gcaaaacagt tccccgaaag aggtagcttt ttaattggcc ggccacaaag
     2461 aatcacttat gccgcacggc ggtaacgagg ggaaccggat cgggcggcca ggatgctatc
     2521 tgtagcccct ttcgtgccac aattagggtg gtgctggctt cttcggaccg cacctaggcg
     2581 atctggttac agcgttggct cctttcttgg gcagtcattt aatcctacat tttactctac
     2641 ggatgtctgt ctgctggagg gctgtgtcca gagccccagc cacaaagagt cagccagcag
     2701 ctctcacacc cggccagacc cgcccctcct ttggcccgcg cggccctagg gcgcccttcc
     2761 tggggaaccc gatcagcttt cacgacgcac cctctccagg attttctcgg gttgtcctag
     2821 gcagtcttgg gcaatagagt gccatttctt agtcaagaca gggcgtcact agcctttcct
     2881 cacctccagc gatattagcg ccgctggggg tggggaaagt gggattggag cctgaggtgg
     2941 aggagcaggg agtatcccag cagcttcgac cttttccccc tgggattcct tcagcttctc
     3001 ctcgattgtc ttatctaaag gctagataga tgggtttctt ccagtggaaa agaaaaagga
     3061 gactttgatc tttggattct cgccctcctt gaagagcaga gggcaggccc gtttctctcc
     3121 acgcccactg ggtttgtggc tcttcgctat tattcaccct cagcttttgc cactgctttt
     3181 gagattttga tgagaaaaac agcgccgggc gctgcctagc acacggtgcg ggctcttcag
     3241 tccctggcgc tctcttgtca gcaccgttct catgtgcagg gcgaattcca gacggcaggg
     3301 cgctggtgga gagggtccag cccgagctac ttcttagcat tcttggagaa cgcaggtcta
     3361 gactggtcag tcttagccac gactaggcat tgagaatctt ctgccaccca tattgtggct
     3421 gccatcttca gtcagaggca agacttctgg caggagcgtc ccagcccgag ggctcggcct
     3481 gcctttcaga ttattatgta ttgcttgtgt cttctaacgt ttgtaggtag aattctctgc
     3541 gctttctgat tcttagttgt cgctatattt agaaaatctt gttattccta gaggatgaca
     3601 aaaaggatgt ctttgctctg cagttagagt gtcccgctat tttttttttt tctgtattct
     3661 ccatctttac tgccccaggg ttcctgctca gagcatcatc tccccctgcc acttagtttc
     3721 accaactacc cttccctatc tccattcccc ctcccccaat gctgggaaga agagacataa
     3781 tggagtaaca gccctccttt atcgctggtt cacgattccc actccaccca acataccagt
     3841 cttgcacagt gc
//
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