LOCUS AK053784 3852 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
library, clone:E130308G17 product:unclassifiable, full insert
sequence.
ACCESSION AK053784
VERSION AK053784.1
KEYWORDS HTC; HTC_FLI; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
PUBMED 10349636
REFERENCE 2
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 3
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 4
AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
and Hayashizaki,Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 6
AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REFERENCE 7
AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
Wahlestedt,C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 8 (bases 1 to 3852)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) Contact:Yoshihide Hayashizaki The Institute
of Physical and Chemical Research (RIKEN), Omics Science Center,
RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E130308G17.
FEATURES Location/Qualifiers
source 1..3852
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="FANTOM_DB:E130308G17"
/db_xref="MGI:MGI:2425648"
/db_xref="taxon:10090"
/clone="E130308G17"
/tissue_type="eyeball"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/dev_stage="0 day neonate"
misc_feature 1..3852
/note="putative;
unclassifiable"
ORIGIN
1 gatataactg gagcctctgc cgggggaaga cgcagagcgc cgctgggctg ccgggtctcc
61 tgcctcctcc tgctcctagg gcctcctgca tgagggagcg gtagagaccc ggacccgctc
121 cgtgctctgc cgcctcgctg cgcttcgccc gggccaggct ctgccaggcc tcgcggtgag
181 ccatgatccg cctcggggct ccccagtcgc tggtgctgct gacgctgctc atcgccgcgg
241 tcctacggtg tcagggccag gatgcccgta agtcgcccgc cgcccctgcc tacttccctg
301 acttgtgacc cttttcctcc tactccctcc cccaagtact ggtccgggtt agggcgctaa
361 gtcctaagcg cagagtatac aggagtacac tgatcctaat tctgcgagta aggacctctg
421 tcgcagcatc ttcagtgaga gtcacgattg gagactttct caggtccctg cgttaagcaa
481 ggatatgcaa caggtttgaa cacagacgca tcaccttcca ccagctttga ccaggacgtt
541 tcgagctcag taaaagaagc cccacactta aaagtaggag agaaatcgag agacgcctac
601 gggttgattt atcagcctag tctaggggtt agacgctgca gaactcaaag gggcgctaga
661 caaagaacta actctgaccc tgatgggttg aaatctgagg ccacaaagaa aaagcggctc
721 ccggcgactt cagcgcagct ctccagtccc ctccgctatc aggctggccc acagtaaggt
781 gcagccgggc agcccttctt tgaaactcgg ctctcccctt gcctccgtta ggctgcagga
841 atttgacact gaaaaacgtt gacattgcaa acagacctgc tttccaaatg tgtccccaag
901 agcacccacc cgcacacaca cacactgtat accctacaat gagttacttt acagcgtgtg
961 tagccgtgga tggatatggg gtcaggctag tgacctgcgt atggctatcg ttagaggtgg
1021 cagctgtata gcctcggtcc aagggcggtt cccgcacctt tccatctcct ccctgggtaa
1081 gatccactgt ctgggattat attcaggaca accgaagcct ggaaagtgta ttaggtagag
1141 aattttcttc cacgtgtttg ggcacgtttc cgacgggtag ggttccagcc ctgctctttc
1201 tctgtatgtt acagactgtt aatcaatcgc aggtgaaact gtttggacag taggtgggga
1261 tcaaagaccc tctgcccgtg agactctgtg ctctttcccc tgccaccagg ctgtctccag
1321 agatgcttta caaggaggcg ggcccgggcg gactttttgc tctttagctt ggcggacccg
1381 gcggggggca gggctagagc ggggagcgct gccgcgagaa gcccgggata gcactttccg
1441 accccgccgc gcagggtggc agggtggcga gctaagccag agtcctgcgt tcgagctctg
1501 ggggcggggg tgggggggca tcgaagtgtt tgtatgtggt ctgagatagg cctgactgta
1561 ttttttgtcc taaactttca agcacacacc ccacaaagct gcggtcttga ccggtgttct
1621 ttatggagcg cagtggagtg aactgagcgt cttaacgctt tctcgaattc ttcatctgat
1681 agcagaggcg ctcgcttaag tgtcaaagag ctctctctca ctgctgcaac ctttttgaca
1741 gagtgaattc cacagctttg tatgagtgtg ggtgggtggg gggaggttgt ctaaaacttt
1801 cggtctctta cgattctgca tctgaccatg cccccccccc ccaaaaaaaa atcgttggtt
1861 ttacacccca gcttgcctca ccaatggcag acaccccaca ctctagcctt ggatccacag
1921 gacccaaaga cctgacgtgg ggcaaggcgt agcctgtgtg gacgttagga atgtcagaaa
1981 cctagagtcc accgcgctcc tcctctccat ctttccacga gtttgggaaa cttgttggcc
2041 gcgaagacat tgacccacat ctgcatttct cagccctagc cttccaaaag tgctgctggt
2101 tcgggagggg agacctcagt cctcctttgt gagacttgtt tgcgttgggg gattggcagc
2161 gatggcttcc agatgggctg aaaccctgcc cgtatttatt taaactggtt cctcgtggag
2221 agctgtgaat cgggctctgt atgcgcttga gaaaagcccc attcatgaga ggcaaggccc
2281 agtgggtccc ccaactcccc gacccccctc tcccacaatg cacagcctcc ccgccctcat
2341 ccccccccca ccccccgtgc ccgcctgccg ccacctcccg ggctccagcc ccgcgcacag
2401 cggcgacgaa gcaaaacagt tccccgaaag aggtagcttt ttaattggcc ggccacaaag
2461 aatcacttat gccgcacggc ggtaacgagg ggaaccggat cgggcggcca ggatgctatc
2521 tgtagcccct ttcgtgccac aattagggtg gtgctggctt cttcggaccg cacctaggcg
2581 atctggttac agcgttggct cctttcttgg gcagtcattt aatcctacat tttactctac
2641 ggatgtctgt ctgctggagg gctgtgtcca gagccccagc cacaaagagt cagccagcag
2701 ctctcacacc cggccagacc cgcccctcct ttggcccgcg cggccctagg gcgcccttcc
2761 tggggaaccc gatcagcttt cacgacgcac cctctccagg attttctcgg gttgtcctag
2821 gcagtcttgg gcaatagagt gccatttctt agtcaagaca gggcgtcact agcctttcct
2881 cacctccagc gatattagcg ccgctggggg tggggaaagt gggattggag cctgaggtgg
2941 aggagcaggg agtatcccag cagcttcgac cttttccccc tgggattcct tcagcttctc
3001 ctcgattgtc ttatctaaag gctagataga tgggtttctt ccagtggaaa agaaaaagga
3061 gactttgatc tttggattct cgccctcctt gaagagcaga gggcaggccc gtttctctcc
3121 acgcccactg ggtttgtggc tcttcgctat tattcaccct cagcttttgc cactgctttt
3181 gagattttga tgagaaaaac agcgccgggc gctgcctagc acacggtgcg ggctcttcag
3241 tccctggcgc tctcttgtca gcaccgttct catgtgcagg gcgaattcca gacggcaggg
3301 cgctggtgga gagggtccag cccgagctac ttcttagcat tcttggagaa cgcaggtcta
3361 gactggtcag tcttagccac gactaggcat tgagaatctt ctgccaccca tattgtggct
3421 gccatcttca gtcagaggca agacttctgg caggagcgtc ccagcccgag ggctcggcct
3481 gcctttcaga ttattatgta ttgcttgtgt cttctaacgt ttgtaggtag aattctctgc
3541 gctttctgat tcttagttgt cgctatattt agaaaatctt gttattccta gaggatgaca
3601 aaaaggatgt ctttgctctg cagttagagt gtcccgctat tttttttttt tctgtattct
3661 ccatctttac tgccccaggg ttcctgctca gagcatcatc tccccctgcc acttagtttc
3721 accaactacc cttccctatc tccattcccc ctcccccaat gctgggaaga agagacataa
3781 tggagtaaca gccctccttt atcgctggtt cacgattccc actccaccca acataccagt
3841 cttgcacagt gc
//