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MAG: Coprococcus sp. isolate DOME_MAG_12934, whole genome shotgun sequencing project

GenBank: JAXJHV000000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       JAXJHV010000000           36 rc    DNA     linear   ENV 30-JAN-2024
DEFINITION  MAG: Coprococcus sp. isolate DOME_MAG_12934, whole genome shotgun
            sequencing project.
ACCESSION   JAXJHV000000000
VERSION     JAXJHV000000000.1
DBLINK      BioProject: PRJNA964705
            BioSample: SAMN38021296
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE      Coprococcus sp. (human gut metagenome)
  ORGANISM  Coprococcus sp.
            Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales;
            Lachnospiraceae; Coprococcus.
REFERENCE   1  (bases 1 to 36)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Interconnectedness of farmer and livestock microbiomes and
            resistomes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 36)
  AUTHORS   Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
            Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
            Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2023) The Edison Family Center for Genome
            Sciences & Systems Biology, Washington University School of
            Medicine, 4515 McKinley Ave, St Louis, MO 63110, USA
COMMENT     The Coprococcus sp. whole genome shotgun (WGS) project has the
            project accession JAXJHV000000000.  This version of the project
            (01) has the accession number JAXJHV010000000, and consists of
            sequences JAXJHV010000001-JAXJHV010000036.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.4
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 12/05/2023 22:15:12
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,597
            CDSs (total)                      :: 2,552
            Genes (coding)                    :: 2,528
            CDSs (with protein)               :: 2,528
            Genes (RNA)                       :: 45
            rRNAs                             :: 2 (23S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 24
            CDSs (without protein)            :: 24
            Pseudo Genes (ambiguous residues) :: 0 of 24
            Pseudo Genes (frameshifted)       :: 6 of 24
            Pseudo Genes (incomplete)         :: 20 of 24
            Pseudo Genes (internal stop)      :: 3 of 24
            Pseudo Genes (multiple problems)  :: 5 of 24
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36
                     /organism="Coprococcus sp."
                     /mol_type="genomic DNA"
                     /isolate="DOME_MAG_12934"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:2049024"
                     /environmental_sample
                     /geo_loc_name="USA: Marshfield, WI"
                     /lat_lon="44.69 N 90.17 W"
                     /metagenome_source="human gut metagenome"
                     /note="metagenomic"
WGS         JAXJHV010000001-JAXJHV010000036
//
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