LOCUS JAXJHV010000000 36 rc DNA linear ENV 30-JAN-2024
DEFINITION MAG: Coprococcus sp. isolate DOME_MAG_12934, whole genome shotgun
sequencing project.
ACCESSION JAXJHV000000000
VERSION JAXJHV000000000.1
DBLINK BioProject: PRJNA964705
BioSample: SAMN38021296
KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE Coprococcus sp. (human gut metagenome)
ORGANISM Coprococcus sp.
Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales;
Lachnospiraceae; Coprococcus.
REFERENCE 1 (bases 1 to 36)
AUTHORS Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
TITLE Interconnectedness of farmer and livestock microbiomes and
resistomes
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 36)
AUTHORS Mahmud,B., Vargas,R.C., Sukhum,K.V., Patel,S., Liao,J., Hall,L.R.,
Kesaraju,A., Le,T., Kitchner,T., Kronholm,E., Koshalek,K.,
Bendixsen,C.G., Vanwormer,J., Shukla,S.K. and Dantas,G.
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2023) The Edison Family Center for Genome
Sciences & Systems Biology, Washington University School of
Medicine, 4515 McKinley Ave, St Louis, MO 63110, USA
COMMENT The Coprococcus sp. whole genome shotgun (WGS) project has the
project accession JAXJHV000000000. This version of the project
(01) has the accession number JAXJHV010000000, and consists of
sequences JAXJHV010000001-JAXJHV010000036.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: MEGAHIT v. 1.1.4
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: Not Applicable
Sequencing Technology :: Illumina NovaSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 12/05/2023 22:15:12
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 2,597
CDSs (total) :: 2,552
Genes (coding) :: 2,528
CDSs (with protein) :: 2,528
Genes (RNA) :: 45
rRNAs :: 2 (23S)
partial rRNAs :: 2 (23S)
tRNAs :: 40
ncRNAs :: 3
Pseudo Genes (total) :: 24
CDSs (without protein) :: 24
Pseudo Genes (ambiguous residues) :: 0 of 24
Pseudo Genes (frameshifted) :: 6 of 24
Pseudo Genes (incomplete) :: 20 of 24
Pseudo Genes (internal stop) :: 3 of 24
Pseudo Genes (multiple problems) :: 5 of 24
CRISPR Arrays :: 2
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..36
/organism="Coprococcus sp."
/mol_type="genomic DNA"
/isolate="DOME_MAG_12934"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:2049024"
/environmental_sample
/geo_loc_name="USA: Marshfield, WI"
/lat_lon="44.69 N 90.17 W"
/metagenome_source="human gut metagenome"
/note="metagenomic"
WGS JAXJHV010000001-JAXJHV010000036
//