LOCUS JBAXAH010000000 183 rc DNA linear ENV 14-MAR-2024
DEFINITION MAG: Bacteroidota bacterium isolate ELA136, whole genome shotgun
sequencing project.
ACCESSION JBAXAH000000000
VERSION JBAXAH000000000.1
DBLINK BioProject: PRJNA1003647
BioSample: SAMN37320311
KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE Bacteroidota bacterium (freshwater metagenome)
ORGANISM Bacteroidota bacterium
Bacteria; Pseudomonadati; Bacteroidota.
REFERENCE 1 (bases 1 to 183)
AUTHORS Tsuji,J.M., Shaw,N.A., Nagashima,S., Venkiteswaran,J.J.,
Schiff,S.L., Watanabe,T., Fukui,M., Hanada,S., Tank,M. and
Neufeld,J.D.
TITLE Anoxygenic phototroph of the Chloroflexota uses a type I reaction
centre
JOURNAL Nature (2024) In press
PUBMED 38480893
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 183)
AUTHORS Tsuji,J.M., Shaw,N.A., Nagashima,S., Venkiteswaran,J., Schiff,S.L.,
Watanabe,T., Fukui,M., Hanada,S., Tank,M. and Neufeld,J.D.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2023) Biology, University of Waterloo, 200
University Avenue West, Waterloo, Ontario N2L 3G1, Canada
COMMENT The Bacteroidota bacterium whole genome shotgun (WGS) project has
the project accession JBAXAH000000000. This version of the project
(01) has the accession number JBAXAH010000000, and consists of
sequences JBAXAH010000001-JBAXAH010000183.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 26-AUG-2019
Assembly Method :: SPAdes v. 3.13.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 9.1x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/08/2024 04:48:32
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 2,323
CDSs (total) :: 2,286
Genes (coding) :: 2,276
CDSs (with protein) :: 2,276
Genes (RNA) :: 37
rRNAs :: 1, 1 (5S, 23S)
complete rRNAs :: 1 (5S)
partial rRNAs :: 1 (23S)
tRNAs :: 32
ncRNAs :: 3
Pseudo Genes (total) :: 10
CDSs (without protein) :: 10
Pseudo Genes (ambiguous residues) :: 0 of 10
Pseudo Genes (frameshifted) :: 1 of 10
Pseudo Genes (incomplete) :: 8 of 10
Pseudo Genes (internal stop) :: 1 of 10
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..183
/organism="Bacteroidota bacterium"
/mol_type="genomic DNA"
/isolate="ELA136"
/isolation_source="freshwater from boreal shield lake"
/db_xref="taxon:1898104"
/environmental_sample
/geo_loc_name="Canada: Ontario"
/lat_lon="49.6630 N 93.7230 W"
/collection_date="2016-09-20"
/metagenome_source="freshwater metagenome"
/note="metagenomic"
WGS JBAXAH010000001-JBAXAH010000183
//