U.S. flag

An official website of the United States government

MAG: Bacteroidota bacterium isolate ELA136, whole genome shotgun sequencing project

GenBank: JBAXAH000000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       JBAXAH010000000          183 rc    DNA     linear   ENV 14-MAR-2024
DEFINITION  MAG: Bacteroidota bacterium isolate ELA136, whole genome shotgun
            sequencing project.
ACCESSION   JBAXAH000000000
VERSION     JBAXAH000000000.1
DBLINK      BioProject: PRJNA1003647
            BioSample: SAMN37320311
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE      Bacteroidota bacterium (freshwater metagenome)
  ORGANISM  Bacteroidota bacterium
            Bacteria; Pseudomonadati; Bacteroidota.
REFERENCE   1  (bases 1 to 183)
  AUTHORS   Tsuji,J.M., Shaw,N.A., Nagashima,S., Venkiteswaran,J.J.,
            Schiff,S.L., Watanabe,T., Fukui,M., Hanada,S., Tank,M. and
            Neufeld,J.D.
  TITLE     Anoxygenic phototroph of the Chloroflexota uses a type I reaction
            centre
  JOURNAL   Nature (2024) In press
   PUBMED   38480893
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 183)
  AUTHORS   Tsuji,J.M., Shaw,N.A., Nagashima,S., Venkiteswaran,J., Schiff,S.L.,
            Watanabe,T., Fukui,M., Hanada,S., Tank,M. and Neufeld,J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2023) Biology, University of Waterloo, 200
            University Avenue West, Waterloo, Ontario N2L 3G1, Canada
COMMENT     The Bacteroidota bacterium whole genome shotgun (WGS) project has
            the project accession JBAXAH000000000.  This version of the project
            (01) has the accession number JBAXAH010000000, and consists of
            sequences JBAXAH010000001-JBAXAH010000183.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 26-AUG-2019
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 9.1x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/08/2024 04:48:32
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,323
            CDSs (total)                      :: 2,286
            Genes (coding)                    :: 2,276
            CDSs (with protein)               :: 2,276
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 10
            CDSs (without protein)            :: 10
            Pseudo Genes (ambiguous residues) :: 0 of 10
            Pseudo Genes (frameshifted)       :: 1 of 10
            Pseudo Genes (incomplete)         :: 8 of 10
            Pseudo Genes (internal stop)      :: 1 of 10
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..183
                     /organism="Bacteroidota bacterium"
                     /mol_type="genomic DNA"
                     /isolate="ELA136"
                     /isolation_source="freshwater from boreal shield lake"
                     /db_xref="taxon:1898104"
                     /environmental_sample
                     /geo_loc_name="Canada: Ontario"
                     /lat_lon="49.6630 N 93.7230 W"
                     /collection_date="2016-09-20"
                     /metagenome_source="freshwater metagenome"
                     /note="metagenomic"
WGS         JBAXAH010000001-JBAXAH010000183
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.