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Schizosaccharomyces pombe 3' tRNA-processing endonuclease tRNAse Z L2 Trz1 (trz1), mRNA

NCBI Reference Sequence: NM_001018422.3

FASTA Graphics 

LOCUS       NM_001018422            3102 bp    mRNA    linear   PLN 16-AUG-2024
DEFINITION  Schizosaccharomyces pombe 3' tRNA-processing endonuclease tRNAse Z
            L2 Trz1 (trz1), mRNA.
ACCESSION   NM_001018422
VERSION     NM_001018422.3
DBLINK      BioProject: PRJNA127
            BioSample: SAMEA3138176
KEYWORDS    RefSeq.
SOURCE      Schizosaccharomyces pombe (fission yeast)
  ORGANISM  Schizosaccharomyces pombe
            Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;
            Schizosaccharomycetes; Schizosaccharomycetales;
            Schizosaccharomycetaceae; Schizosaccharomyces.
REFERENCE   1  (bases 1 to 3102)
  AUTHORS   Schafer,B., Hansen,M. and Lang,B.F.
  TITLE     Transcription and RNA-processing in fission yeast mitochondria
  JOURNAL   RNA 11 (5), 785-795 (2005)
   PUBMED   15811919
REFERENCE   2  (bases 1 to 3102)
  AUTHORS   Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R.,
            Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D.,
            Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T.,
            Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P.,
            Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D.,
            Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S.,
            Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M.,
            Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S.,
            Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S.,
            Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S.,
            Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M.,
            Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G.,
            Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J.,
            Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I.,
            Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C.,
            Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D.,
            Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H.,
            Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H.,
            Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S.,
            Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z.,
            Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C.,
            Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L.,
            Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A.,
            Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L.,
            Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V.,
            Ussery,D., Barrell,B.G. and Nurse,P.
  TITLE     The genome sequence of Schizosaccharomyces pombe
  JOURNAL   Nature 415 (6874), 871-880 (2002)
   PUBMED   11859360
  REMARK    Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to
            Cerutti L]]
REFERENCE   3
  AUTHORS   Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R.,
            Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D.,
            Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T.,
            Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P.,
            Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D.,
            Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S.,
            Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M.,
            Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S.,
            Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S.,
            Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S.,
            Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M.,
            Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G.,
            Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J.,
            Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I.,
            Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C.,
            Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D.,
            Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H.,
            Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H.,
            Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S.,
            Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z.,
            Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C.,
            Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L.,
            Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A.,
            Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L.,
            Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V.,
            Ussery,D., Barrell,B.G. and Nurse,P.
  TITLE     The genome sequence of Schizosaccharomyces pombe
  JOURNAL   Nature 415 (6874), 871-880 (2002)
   PUBMED   11859360
  REMARK    Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to
            Cerutti L]]
REFERENCE   4  (bases 1 to 3102)
  AUTHORS   Trinkl,H., Lang,B.F. and Wolf,K.
  TITLE     Nucleotide sequence of the gene encoding the small ribosomal RNA in
            the mitochondrial genome of the fission yeast Schizosaccharomyces
            pombe
  JOURNAL   Nucleic Acids Res 17 (16), 6730 (1989)
   PUBMED   2780299
REFERENCE   5  (bases 1 to 3102)
  AUTHORS   Lang,B.F., Cedergren,R. and Gray,M.W.
  TITLE     The mitochondrial genome of the fission yeast, Schizosaccharomyces
            pombe. Sequence of the large-subunit ribosomal RNA gene, comparison
            of potential secondary structure in fungal mitochondrial
            large-subunit rRNAs and evolutionary considerations
  JOURNAL   Eur J Biochem 169 (3), 527-537 (1987)
   PUBMED   2446871
REFERENCE   6  (bases 1 to 3102)
  AUTHORS   Lang,B.F., Ahne,F. and Bonen,L.
  TITLE     The mitochondrial genome of the fission yeast Schizosaccharomyces
            pombe. The cytochrome b gene has an intron closely related to the
            first two introns in the Saccharomyces cerevisiae cox1 gene
  JOURNAL   J Mol Biol 184 (3), 353-366 (1985)
   PUBMED   4046021
REFERENCE   7  (bases 1 to 3102)
  AUTHORS   Lang,B.F.
  TITLE     The mitochondrial genome of the fission yeast Schizosaccharomyces
            pombe: highly homologous introns are inserted at the same position
            of the otherwise less conserved cox1 genes in Schizosaccharomyces
            pombe and Aspergillus nidulans
  JOURNAL   EMBO J 3 (9), 2129-2136 (1984)
   PUBMED   6092057
REFERENCE   8  (bases 1 to 3102)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   9
  AUTHORS   Wood,V. and Rutherford,K.
  CONSRTM   PomBase
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2024) University of Cambridge, PomBase, Hopkins
            building, Tennis Court Rd, Cambridge, United Kingdom
REFERENCE   10
  AUTHORS   Wood,V.
  CONSRTM   The Schizosaccharomyces pombe Genome Sequencing Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2007) European Schizosaccharomyces genome
            sequencing project, Sanger Institute, The Wellcome Trust Genome
            Campus, Hinxton, Cambridge CB10 1SA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_003424).
            
            On Jun 21, 2024 this sequence version replaced NM_001018422.2.
FEATURES             Location/Qualifiers
     source          1..3102
                     /organism="Schizosaccharomyces pombe"
                     /mol_type="mRNA"
                     /strain="972h-"
                     /db_xref="taxon:4896"
                     /chromosome="I"
     gene            1..3102
                     /gene="trz1"
                     /locus_tag="SPOM_SPAC1D4.10"
                     /gene_synonym="sptrz1"
                     /db_xref="GeneID:2542457"
                     /db_xref="PomBase:SPAC1D4.10"
     CDS             256..2685
                     /gene="trz1"
                     /locus_tag="SPOM_SPAC1D4.10"
                     /gene_synonym="sptrz1"
                     /codon_start=1
                     /product="3' tRNA-processing endonuclease tRNAse Z L2
                     Trz1"
                     /protein_id="NP_593023.1"
                     /db_xref="GeneID:2542457"
                     /db_xref="PomBase:SPAC1D4.10"
                     /translation="MSKTVNFRATKNFYLQFVSVSSRDTSCIPCIHLFFDSKRYVFGS
                     VGEGCQRAILSQQLRLSKIKDVFLMQGSSISSPDTYDSSSSSSTTSVSDMLQLDDRDK
                     VIVSERNSMCSTVNYPTWWDSCGGFPGFLLSLNDISEPGETGEASPFVLHGPSEVHQF
                     LSSMRHFTYHTNVNLTVQGYTSAEAPVFVDENICVTPVVVSLVKNSFKKRKHENINRG
                     TNARPLKEDRANTSPHWYSHVSNDTSFVVENAMYNTPAPLEPDKPELFISYIVQSHPT
                     PGKFDAAKAKSLGITKGLDCGRLARGEPVTLENGKTVYPKEVIGPSIPGSSFFIIHCP
                     NELVIDLVIENHKWTNAPKPVCVIHSVTPEVYKNPRYQSWISSFPSEVSHLIASTEVN
                     EVINYPRSAVAIATLNLLDSKVFPLGFNCYEVKNVQKNNRIAFAKPKLRFAFGKKTGI
                     DDSEVGVSIEELKDKILKEKPDYKSFVEEAQKYVSDKPKAPSFAGSDIQICTLGTGSA
                     MPSLYRNVSSTYVRIPVDKKCMEDSAISMKNILLDCGEGTLGRLSRQYGDNLKYEIAS
                     LRWIYISHMHADHHAGVIGVLKAWTKYSDGRSKLFITAPPQFEFWLLEYSRIDYLPLS
                     NIVFISNSALRTDRKPSALESSRLSSLFKEFDLVSFRTVPAIHCPYSYCMEITNSSGW
                     KIAYSGDTRPSEDFANIAKDSTLLIHEATLEDSMHEIAIKKQHSTYSEALEVAKKAGT
                     KNVILTHFSQRYPKLPDIDISTEDLHIALAFDGMTLKISDISLFRYFGKPLAYLFNEE
                     NLKEESDPLKF"
ORIGIN      
        1 acaacagctg gtttgtaggt ttcaactacg agttaactgc ttctttcata catctaaatc
       61 aatgttatat gaaacatttt gtgaaatccg aaacctctta ctcttagtat ccagttgagt
      121 tcgaaaattg gtactgagta gctattagta ttttaggccc ctttacttac ttttgttttt
      181 gttaacttag atttcggacc cttttttttt tattcatatt gaaccttttc ctttttcttt
      241 ttcaggtcgt gttaaatgtc gaaaactgtt aattttaggg caacaaaaaa tttctattta
      301 caatttgtga gcgtcagttc tcgggataca tcttgtattc cctgcatcca cttatttttt
      361 gattctaaga ggtatgtatt tggaagcgta ggggaaggtt gtcaaagagc tatactctcc
      421 caacagcttc gattatcaaa gattaaagat gtcttcttaa tgcaaggatc ttcaatatca
      481 tcaccagata catatgattc ttcttcttca tcgtctacta cctctgtttc tgatatgcta
      541 cagctggatg atcgggacaa agttattgta tctgaacgta atagtatgtg ctcgactgta
      601 aactatccta catggtggga ttcttgtggt gggtttccag gctttttgct gtctctcaat
      661 gatatttcgg aacctgggga aaccggagaa gctagtcctt ttgtccttca tggacctagt
      721 gaagttcatc agtttttatc ttcgatgcgg catttcactt atcatacgaa tgtaaattta
      781 acggtacagg gatatacttc ggctgaggcc ccagtattcg ttgatgaaaa tatttgtgta
      841 actccggtag ttgtttcact agttaaaaat tcttttaaaa aaaggaagca tgaaaacatt
      901 aacagaggta caaatgcaag accattaaaa gaggatagag caaatacttc tcctcattgg
      961 tattctcacg tttccaatga tacatcattc gtcgttgaga atgcaatgta taacactccg
     1021 gctcctttgg aaccagacaa gccagagctg tttatttctt atattgttca atcccatcct
     1081 accccaggga aatttgacgc cgcaaaagca aaatcgcttg gtatcacgaa aggattagac
     1141 tgtggtagac tcgctcgagg agaacctgta actcttgaaa acggaaaaac agtatatcca
     1201 aaagaagtga ttggtccttc tattcctggc tcctcctttt ttattattca ttgccccaac
     1261 gaactcgtaa ttgacttggt cattgaaaat cataaatgga caaatgcacc taaacctgtt
     1321 tgtgtcattc attcggttac accagaagta tacaaaaatc cacgttatca gagctggatt
     1381 tcttcattcc caagtgaggt gagccatcta attgcttcga ctgaagtaaa cgaagtaata
     1441 aattatccta ggagtgcagt cgctattgca acacttaatt tgttagattc aaaagttttt
     1501 cctttaggct ttaactgcta tgaagttaaa aatgtacaaa aaaacaatcg aattgctttt
     1561 gccaaaccca aactgcgttt tgcgtttgga aaaaaaactg gtattgacga ttcggaagtt
     1621 ggggtttcga ttgaagagtt gaaggataaa attttgaaag agaaaccaga ttataaatca
     1681 tttgttgaag aagctcaaaa atatgttagt gataaaccaa aggcaccgag ctttgcaggt
     1741 tctgacatcc aaatttgtac tcttggcact ggatctgcaa tgccttcttt atacagaaat
     1801 gtttcatcta cttacgttag aattcccgtt gacaaaaaat gtatggaaga ctcagctatc
     1861 agtatgaaaa acatactttt ggactgtgga gagggcactt tgggacgtct atcgaggcag
     1921 tatggtgaca atttaaaata cgaaatagct tctttacgat ggatttatat ctcccatatg
     1981 catgctgacc atcatgctgg tgttataggg gttttaaagg cttggacgaa gtactcagat
     2041 ggcagatcaa agttgtttat aacagcacct ccacaatttg aattttggct actagaatac
     2101 tcaaggattg attatctacc attatccaac atcgtattta tttccaatag tgctttacgt
     2161 actgacagga agccgtctgc tttggaatcc tctaggttgt cttctttatt taaagaattt
     2221 gatttagtat cttttcgaac ggttcctgcc atacactgcc cgtattcata ttgcatggag
     2281 attactaatt ccagtggttg gaagatcgca tactctggag atactcgacc ttctgaggat
     2341 tttgctaaca ttgccaaaga ctcaacttta ttaattcacg aagctacttt ggaagactct
     2401 atgcacgaaa ttgcaataaa aaagcaacac agtacttact ctgaagcttt agaagtggcc
     2461 aaaaaagctg gtacaaaaaa cgttattttg actcatttta gccaacgata tcccaaatta
     2521 ccagacattg atatttcgac agaagactta catatagctt tggcgtttga tggaatgact
     2581 cttaaaatat cggatatctc attgtttcgt tattttggaa agcctctggc ttatctattt
     2641 aatgaggaaa atttaaaaga ggagtcggat cctttaaagt tctaactact tgagctattg
     2701 tctcatatta tataaattgg gtctcaggca agtgatctct gttgtttaat gaaatgggca
     2761 aaccttttct tcattataca attatgttca taacaaaata cttcagactt caaaaaaatt
     2821 gtcaaggtaa tccgtatcta ttaaaatagt cctgaaaacc attaatgatc tttttttctt
     2881 ttatttcact gagtaactac tatttaaccc aaggaccaaa atttacgagt gtaattgacg
     2941 acttaatcaa acctttatgg aataatctaa aaagaggaca attttgagtt ttaatttata
     3001 tcggataacc aagtactcta tgcaattaaa gtaattgtag aacatgcgag ttttcgtcta
     3061 agaaactgaa taataacaaa cgaataaaca tcagctaaag cg
//
Feature
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for 3' tRNA-processing endonuclease tRNAse Z L2 Trz1 (NP_593023.1).

More about the trz1 gene

  • trz1 gene
    Also Known As: SPOM_SPAC1D4.10, sptrz1

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