LOCUS NM_001018422 3102 bp mRNA linear PLN 16-AUG-2024
DEFINITION Schizosaccharomyces pombe 3' tRNA-processing endonuclease tRNAse Z
L2 Trz1 (trz1), mRNA.
ACCESSION NM_001018422
VERSION NM_001018422.3
DBLINK BioProject: PRJNA127
BioSample: SAMEA3138176
KEYWORDS RefSeq.
SOURCE Schizosaccharomyces pombe (fission yeast)
ORGANISM Schizosaccharomyces pombe
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;
Schizosaccharomycetes; Schizosaccharomycetales;
Schizosaccharomycetaceae; Schizosaccharomyces.
REFERENCE 1 (bases 1 to 3102)
AUTHORS Schafer,B., Hansen,M. and Lang,B.F.
TITLE Transcription and RNA-processing in fission yeast mitochondria
JOURNAL RNA 11 (5), 785-795 (2005)
PUBMED 15811919
REFERENCE 2 (bases 1 to 3102)
AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R.,
Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D.,
Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T.,
Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P.,
Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D.,
Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S.,
Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M.,
Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S.,
Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S.,
Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S.,
Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M.,
Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G.,
Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J.,
Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I.,
Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C.,
Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D.,
Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H.,
Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H.,
Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S.,
Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z.,
Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C.,
Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L.,
Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A.,
Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L.,
Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V.,
Ussery,D., Barrell,B.G. and Nurse,P.
TITLE The genome sequence of Schizosaccharomyces pombe
JOURNAL Nature 415 (6874), 871-880 (2002)
PUBMED 11859360
REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to
Cerutti L]]
REFERENCE 3
AUTHORS Wood,V., Gwilliam,R., Rajandream,M.A., Lyne,M., Lyne,R.,
Stewart,A., Sgouros,J., Peat,N., Hayles,J., Baker,S., Basham,D.,
Bowman,S., Brooks,K., Brown,D., Brown,S., Chillingworth,T.,
Churcher,C., Collins,M., Connor,R., Cronin,A., Davis,P.,
Feltwell,T., Fraser,A., Gentles,S., Goble,A., Hamlin,N., Harris,D.,
Hidalgo,J., Hodgson,G., Holroyd,S., Hornsby,T., Howarth,S.,
Huckle,E.J., Hunt,S., Jagels,K., James,K., Jones,L., Jones,M.,
Leather,S., McDonald,S., McLean,J., Mooney,P., Moule,S.,
Mungall,K., Murphy,L., Niblett,D., Odell,C., Oliver,K., O'Neil,S.,
Pearson,D., Quail,M.A., Rabbinowitsch,E., Rutherford,K., Rutter,S.,
Saunders,D., Seeger,K., Sharp,S., Skelton,J., Simmonds,M.,
Squares,R., Squares,S., Stevens,K., Taylor,K., Taylor,R.G.,
Tivey,A., Walsh,S., Warren,T., Whitehead,S., Woodward,J.,
Volckaert,G., Aert,R., Robben,J., Grymonprez,B., Weltjens,I.,
Vanstreels,E., Rieger,M., Schafer,M., Muller-Auer,S., Gabel,C.,
Fuchs,M., Dusterhoft,A., Fritzc,C., Holzer,E., Moestl,D.,
Hilbert,H., Borzym,K., Langer,I., Beck,A., Lehrach,H.,
Reinhardt,R., Pohl,T.M., Eger,P., Zimmermann,W., Wedler,H.,
Wambutt,R., Purnelle,B., Goffeau,A., Cadieu,E., Dreano,S.,
Gloux,S., Lelaure,V., Mottier,S., Galibert,F., Aves,S.J., Xiang,Z.,
Hunt,C., Moore,K., Hurst,S.M., Lucas,M., Rochet,M., Gaillardin,C.,
Tallada,V.A., Garzon,A., Thode,G., Daga,R.R., Cruzado,L.,
Jimenez,J., Sanchez,M., del Rey,F., Benito,J., Dominguez,A.,
Revuelta,J.L., Moreno,S., Armstrong,J., Forsburg,S.L., Cerutti,L.,
Lowe,T., McCombie,W.R., Paulsen,I., Potashkin,J., Shpakovski,G.V.,
Ussery,D., Barrell,B.G. and Nurse,P.
TITLE The genome sequence of Schizosaccharomyces pombe
JOURNAL Nature 415 (6874), 871-880 (2002)
PUBMED 11859360
REMARK Erratum:[Nature 2003 Jan 2;421(6918):94. Cerrutti L [corrected to
Cerutti L]]
REFERENCE 4 (bases 1 to 3102)
AUTHORS Trinkl,H., Lang,B.F. and Wolf,K.
TITLE Nucleotide sequence of the gene encoding the small ribosomal RNA in
the mitochondrial genome of the fission yeast Schizosaccharomyces
pombe
JOURNAL Nucleic Acids Res 17 (16), 6730 (1989)
PUBMED 2780299
REFERENCE 5 (bases 1 to 3102)
AUTHORS Lang,B.F., Cedergren,R. and Gray,M.W.
TITLE The mitochondrial genome of the fission yeast, Schizosaccharomyces
pombe. Sequence of the large-subunit ribosomal RNA gene, comparison
of potential secondary structure in fungal mitochondrial
large-subunit rRNAs and evolutionary considerations
JOURNAL Eur J Biochem 169 (3), 527-537 (1987)
PUBMED 2446871
REFERENCE 6 (bases 1 to 3102)
AUTHORS Lang,B.F., Ahne,F. and Bonen,L.
TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces
pombe. The cytochrome b gene has an intron closely related to the
first two introns in the Saccharomyces cerevisiae cox1 gene
JOURNAL J Mol Biol 184 (3), 353-366 (1985)
PUBMED 4046021
REFERENCE 7 (bases 1 to 3102)
AUTHORS Lang,B.F.
TITLE The mitochondrial genome of the fission yeast Schizosaccharomyces
pombe: highly homologous introns are inserted at the same position
of the otherwise less conserved cox1 genes in Schizosaccharomyces
pombe and Aspergillus nidulans
JOURNAL EMBO J 3 (9), 2129-2136 (1984)
PUBMED 6092057
REFERENCE 8 (bases 1 to 3102)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (16-AUG-2024) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 9
AUTHORS Wood,V. and Rutherford,K.
CONSRTM PomBase
TITLE Direct Submission
JOURNAL Submitted (13-MAR-2024) University of Cambridge, PomBase, Hopkins
building, Tennis Court Rd, Cambridge, United Kingdom
REFERENCE 10
AUTHORS Wood,V.
CONSRTM The Schizosaccharomyces pombe Genome Sequencing Consortium
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2007) European Schizosaccharomyces genome
sequencing project, Sanger Institute, The Wellcome Trust Genome
Campus, Hinxton, Cambridge CB10 1SA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. This record is derived from an annotated genomic
sequence (NC_003424).
On Jun 21, 2024 this sequence version replaced NM_001018422.2.
FEATURES Location/Qualifiers
source 1..3102
/organism="Schizosaccharomyces pombe"
/mol_type="mRNA"
/strain="972h-"
/db_xref="taxon:4896"
/chromosome="I"
gene 1..3102
/gene="trz1"
/locus_tag="SPOM_SPAC1D4.10"
/gene_synonym="sptrz1"
/db_xref="GeneID:2542457"
/db_xref="PomBase:SPAC1D4.10"
CDS 256..2685
/gene="trz1"
/locus_tag="SPOM_SPAC1D4.10"
/gene_synonym="sptrz1"
/codon_start=1
/product="3' tRNA-processing endonuclease tRNAse Z L2
Trz1"
/protein_id="NP_593023.1"
/db_xref="GeneID:2542457"
/db_xref="PomBase:SPAC1D4.10"
/translation="MSKTVNFRATKNFYLQFVSVSSRDTSCIPCIHLFFDSKRYVFGS
VGEGCQRAILSQQLRLSKIKDVFLMQGSSISSPDTYDSSSSSSTTSVSDMLQLDDRDK
VIVSERNSMCSTVNYPTWWDSCGGFPGFLLSLNDISEPGETGEASPFVLHGPSEVHQF
LSSMRHFTYHTNVNLTVQGYTSAEAPVFVDENICVTPVVVSLVKNSFKKRKHENINRG
TNARPLKEDRANTSPHWYSHVSNDTSFVVENAMYNTPAPLEPDKPELFISYIVQSHPT
PGKFDAAKAKSLGITKGLDCGRLARGEPVTLENGKTVYPKEVIGPSIPGSSFFIIHCP
NELVIDLVIENHKWTNAPKPVCVIHSVTPEVYKNPRYQSWISSFPSEVSHLIASTEVN
EVINYPRSAVAIATLNLLDSKVFPLGFNCYEVKNVQKNNRIAFAKPKLRFAFGKKTGI
DDSEVGVSIEELKDKILKEKPDYKSFVEEAQKYVSDKPKAPSFAGSDIQICTLGTGSA
MPSLYRNVSSTYVRIPVDKKCMEDSAISMKNILLDCGEGTLGRLSRQYGDNLKYEIAS
LRWIYISHMHADHHAGVIGVLKAWTKYSDGRSKLFITAPPQFEFWLLEYSRIDYLPLS
NIVFISNSALRTDRKPSALESSRLSSLFKEFDLVSFRTVPAIHCPYSYCMEITNSSGW
KIAYSGDTRPSEDFANIAKDSTLLIHEATLEDSMHEIAIKKQHSTYSEALEVAKKAGT
KNVILTHFSQRYPKLPDIDISTEDLHIALAFDGMTLKISDISLFRYFGKPLAYLFNEE
NLKEESDPLKF"
ORIGIN
1 acaacagctg gtttgtaggt ttcaactacg agttaactgc ttctttcata catctaaatc
61 aatgttatat gaaacatttt gtgaaatccg aaacctctta ctcttagtat ccagttgagt
121 tcgaaaattg gtactgagta gctattagta ttttaggccc ctttacttac ttttgttttt
181 gttaacttag atttcggacc cttttttttt tattcatatt gaaccttttc ctttttcttt
241 ttcaggtcgt gttaaatgtc gaaaactgtt aattttaggg caacaaaaaa tttctattta
301 caatttgtga gcgtcagttc tcgggataca tcttgtattc cctgcatcca cttatttttt
361 gattctaaga ggtatgtatt tggaagcgta ggggaaggtt gtcaaagagc tatactctcc
421 caacagcttc gattatcaaa gattaaagat gtcttcttaa tgcaaggatc ttcaatatca
481 tcaccagata catatgattc ttcttcttca tcgtctacta cctctgtttc tgatatgcta
541 cagctggatg atcgggacaa agttattgta tctgaacgta atagtatgtg ctcgactgta
601 aactatccta catggtggga ttcttgtggt gggtttccag gctttttgct gtctctcaat
661 gatatttcgg aacctgggga aaccggagaa gctagtcctt ttgtccttca tggacctagt
721 gaagttcatc agtttttatc ttcgatgcgg catttcactt atcatacgaa tgtaaattta
781 acggtacagg gatatacttc ggctgaggcc ccagtattcg ttgatgaaaa tatttgtgta
841 actccggtag ttgtttcact agttaaaaat tcttttaaaa aaaggaagca tgaaaacatt
901 aacagaggta caaatgcaag accattaaaa gaggatagag caaatacttc tcctcattgg
961 tattctcacg tttccaatga tacatcattc gtcgttgaga atgcaatgta taacactccg
1021 gctcctttgg aaccagacaa gccagagctg tttatttctt atattgttca atcccatcct
1081 accccaggga aatttgacgc cgcaaaagca aaatcgcttg gtatcacgaa aggattagac
1141 tgtggtagac tcgctcgagg agaacctgta actcttgaaa acggaaaaac agtatatcca
1201 aaagaagtga ttggtccttc tattcctggc tcctcctttt ttattattca ttgccccaac
1261 gaactcgtaa ttgacttggt cattgaaaat cataaatgga caaatgcacc taaacctgtt
1321 tgtgtcattc attcggttac accagaagta tacaaaaatc cacgttatca gagctggatt
1381 tcttcattcc caagtgaggt gagccatcta attgcttcga ctgaagtaaa cgaagtaata
1441 aattatccta ggagtgcagt cgctattgca acacttaatt tgttagattc aaaagttttt
1501 cctttaggct ttaactgcta tgaagttaaa aatgtacaaa aaaacaatcg aattgctttt
1561 gccaaaccca aactgcgttt tgcgtttgga aaaaaaactg gtattgacga ttcggaagtt
1621 ggggtttcga ttgaagagtt gaaggataaa attttgaaag agaaaccaga ttataaatca
1681 tttgttgaag aagctcaaaa atatgttagt gataaaccaa aggcaccgag ctttgcaggt
1741 tctgacatcc aaatttgtac tcttggcact ggatctgcaa tgccttcttt atacagaaat
1801 gtttcatcta cttacgttag aattcccgtt gacaaaaaat gtatggaaga ctcagctatc
1861 agtatgaaaa acatactttt ggactgtgga gagggcactt tgggacgtct atcgaggcag
1921 tatggtgaca atttaaaata cgaaatagct tctttacgat ggatttatat ctcccatatg
1981 catgctgacc atcatgctgg tgttataggg gttttaaagg cttggacgaa gtactcagat
2041 ggcagatcaa agttgtttat aacagcacct ccacaatttg aattttggct actagaatac
2101 tcaaggattg attatctacc attatccaac atcgtattta tttccaatag tgctttacgt
2161 actgacagga agccgtctgc tttggaatcc tctaggttgt cttctttatt taaagaattt
2221 gatttagtat cttttcgaac ggttcctgcc atacactgcc cgtattcata ttgcatggag
2281 attactaatt ccagtggttg gaagatcgca tactctggag atactcgacc ttctgaggat
2341 tttgctaaca ttgccaaaga ctcaacttta ttaattcacg aagctacttt ggaagactct
2401 atgcacgaaa ttgcaataaa aaagcaacac agtacttact ctgaagcttt agaagtggcc
2461 aaaaaagctg gtacaaaaaa cgttattttg actcatttta gccaacgata tcccaaatta
2521 ccagacattg atatttcgac agaagactta catatagctt tggcgtttga tggaatgact
2581 cttaaaatat cggatatctc attgtttcgt tattttggaa agcctctggc ttatctattt
2641 aatgaggaaa atttaaaaga ggagtcggat cctttaaagt tctaactact tgagctattg
2701 tctcatatta tataaattgg gtctcaggca agtgatctct gttgtttaat gaaatgggca
2761 aaccttttct tcattataca attatgttca taacaaaata cttcagactt caaaaaaatt
2821 gtcaaggtaa tccgtatcta ttaaaatagt cctgaaaacc attaatgatc tttttttctt
2881 ttatttcact gagtaactac tatttaaccc aaggaccaaa atttacgagt gtaattgacg
2941 acttaatcaa acctttatgg aataatctaa aaagaggaca attttgagtt ttaatttata
3001 tcggataacc aagtactcta tgcaattaaa gtaattgtag aacatgcgag ttttcgtcta
3061 agaaactgaa taataacaaa cgaataaaca tcagctaaag cg
//