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MAG: Marinicella sp. isolate AC1.116, whole genome shotgun sequencing project

GenBank: JAWLAP000000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       JAWLAP010000000           23 rc    DNA     linear   ENV 20-AUG-2024
DEFINITION  MAG: Marinicella sp. isolate AC1.116, whole genome shotgun
            sequencing project.
ACCESSION   JAWLAP000000000
VERSION     JAWLAP000000000.1
DBLINK      BioProject: PRJNA974210
            BioSample: SAMN37790460
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE      Marinicella sp. (wastewater metagenome)
  ORGANISM  Marinicella sp.
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Oceanospirillales; Alcanivoracaceae; Marinicella.
REFERENCE   1  (bases 1 to 23)
  AUTHORS   Wang,D.
  TITLE     Assembly and interactions of prokaryotic and viral communities in a
            full-scale biofilm wastewater treatment system
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 23)
  AUTHORS   Wang,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-OCT-2023) Civil Engineering, The University of Hong
            Kong, Pokfulam road, Hong Kong 999077, China
COMMENT     The Marinicella sp. whole genome shotgun (WGS) project has the
            project accession JAWLAP000000000.  This version of the project
            (01) has the accession number JAWLAP010000000, and consists of
            sequences JAWLAP010000001-JAWLAP010000023.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Flye v. v2.9-b1768
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 3x
            Sequencing Technology  :: Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/19/2023 20:03:44
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,303
            CDSs (total)                      :: 3,256
            Genes (coding)                    :: 3,238
            CDSs (with protein)               :: 3,238
            Genes (RNA)                       :: 47
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 18
            CDSs (without protein)            :: 18
            Pseudo Genes (ambiguous residues) :: 0 of 18
            Pseudo Genes (frameshifted)       :: 10 of 18
            Pseudo Genes (incomplete)         :: 10 of 18
            Pseudo Genes (internal stop)      :: 4 of 18
            Pseudo Genes (multiple problems)  :: 6 of 18
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23
                     /organism="Marinicella sp."
                     /mol_type="genomic DNA"
                     /isolate="AC1.116"
                     /isolation_source="wastewater treatment plant"
                     /db_xref="taxon:1955066"
                     /environmental_sample
                     /geo_loc_name="China: Hong Kong"
                     /lat_lon="22.2827 N 114.1368 E"
                     /collection_date="2020-03-19"
                     /metagenome_source="wastewater metagenome"
                     /note="metagenomic"
WGS         JAWLAP010000001-JAWLAP010000023
//
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