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Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430023H11 product:hypothetical Phospholipase A2 containing protein, full insert sequence

GenBank: AK052441.1

FASTA Graphics 

LOCUS       AK052441                2239 bp    mRNA    linear   HTC 24-JUL-2016
DEFINITION  Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430023H11 product:hypothetical Phospholipase A2
            containing protein, full insert sequence.
ACCESSION   AK052441
VERSION     AK052441.1
KEYWORDS    HTC; HTC_FLI; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
   PUBMED   10349636
REFERENCE   2
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   3
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
            Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
            Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
            Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
            Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
            Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
            Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   4
  AUTHORS   Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
            Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
            Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
            Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
            Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
            Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
            Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
            Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
            Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
            Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
            Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
            Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
            Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
            Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
            Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
            Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
            Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
            Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
            and Hayashizaki,Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5
  AUTHORS   Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
            Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
            Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
            Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
            Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
            Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
            Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
            Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
            Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
            Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
            Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
            Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
            Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
            Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
            Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
            Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
            Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
            Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
            Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
            Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
            Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
            Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
            Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
            Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
            Rogers,J., Birney,E. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   6
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
REFERENCE   7
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   8  (bases 1 to 2239)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
            Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
            Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
            Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
            Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
            Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2001) Contact:Yoshihide Hayashizaki The Institute
            of Physical and Chemical Research (RIKEN), Omics Science Center,
            RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
            Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=D430023H11.
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="FANTOM_DB:D430023H11"
                     /db_xref="MGI:MGI:2421832"
                     /db_xref="taxon:10090"
                     /clone="D430023H11"
                     /tissue_type="lung"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /dev_stage="13 days embryo"
     CDS             272..>2239
                     /note="unnamed protein product; hypothetical Phospholipase
                     A2 containing protein (InterPro|IPR001211, evidence:
                     InterPro);
                     putative"
                     /codon_start=1
                     /protein_id="BAC34992.1"
                     /translation="MASITQLFDDLCEALLPAAQARPGQRSVNRKRAKRSLKRVAYNA
                     LFANLFQEDTHQRQPDSSKLPVKNKVLMLSFDLRVGGLGPEADRLEELVEKLEAAPDC
                     PFVEVASVLDLLVQLAGSGPPQVLRRKRDYFFNNKHAGRNIPYSGYDCYDLSVFEMDV
                     RSFISGEENLCHHTVQEALQVMEAAPGTGLPTVGLFSIGDSCGDRFERDTRVSLFGAL
                     VHSRTYDMDVRLDLPPVPDSADFSGLAIKVPQIVDQWEDEGFQSASNLTPDSQSEPSM
                     TPDLDLWEAVLTYEASKRRCWERIGCPPGHREEPYLTEAGRDAFDRFCRLRHGELQAL
                     SGGLLQAPKPVLVEESELVKDSLNVLLGVVSATFSLCRPTQAFVVEPGVHVSGASPES
                     ISSILSEVAEYGTCYTRLSHFSLQPVVGSLCSRGLVFQAFTSGLRRYLQYYRACVLST
                     PPTLSLLTIGFLFKKLGRQLRYLAELCGVGTVSLATSGEPRAVFPTGVKLLSYLYQEA
                     LDNCSNEHYPVLLSLLKTSCEPYTRFIHDWVYSGVFRDVYGEFMIQVNHEYLSFRDKF
                     YWTHGYVLISKEVEDCVPVFLKHIAHDVYVCGKTINLLKLCCPRHYLCWSDVPVPRIS
                     VIFSLEELKEIEKDCAVYVGRMERVARHSCIS"
ORIGIN      
        1 ggtacgcatt cggtcggtaa acttgtcatg gtccgggaga gccgaggacg agcgccaggt
       61 ggaggctgag ggctgttagg gtcgcggcgt gtggcctctt gcagtgcgaa acctgagacg
      121 cggatgccgg gttgccgggt gtggagccac gggcggtccg ctttttgagc ctggctcacc
      181 tacggtgagc tttggccttt gagagcatga agtgactcct aggtgcaaag tttaccagtc
      241 aggagggtcc tgggctgaaa agagagtgac tatggccagc atcacccagc tgttcgatga
      301 cctctgcgag gctctcttac ctgctgccca agctcgcccc ggccagcgca gtgtgaacag
      361 gaagagggcg aagcggagcc ttaagagggt ggcctacaat gcccttttcg caaatctttt
      421 tcaagaggac acccatcaac ggcagcccga ctcgtcgaag ctccccgtga aaaacaaggt
      481 cctcatgctg tccttcgatt tgagggtggg gggcttgggg ccagaggctg accgtttgga
      541 ggagctcgtg gagaaacttg aagcagcccc tgactgtcct tttgtggagg tagcatcagt
      601 gttggacctc ttagttcagc tggcaggaag tggcccccct caagtgctgc gtagaaaacg
      661 ggattacttc tttaacaaca agcatgcagg ccgaaacata ccctacagcg gctacgattg
      721 ctatgacttg agtgtgtttg aaatggacgt tcggtcattt atctctgggg aggagaattt
      781 gtgtcatcac acggtccagg aagcgcttca ggtgatggag gctgccccag gcactggcct
      841 gcccaccgtt gggctcttct caattggtga ctcttgtggt gacaggtttg agagagacac
      901 cagggtctcc ctctttggtg cacttgtgca tagccgcacc tatgacatgg atgtgcgact
      961 ggacctacca cctgtgccag acagcgcgga cttctctgga ctagccatca aggtcccaca
     1021 gattgtggat cagtgggaag atgaaggttt ccagtcagct tccaatttaa ctcccgactc
     1081 ccagtctgaa ccaagcatga cccccgattt ggacctgtgg gaagctgtgc tcacatacga
     1141 agccagcaag cggaggtgct gggagcgtat tggatgcccc cctggtcacc gagaggagcc
     1201 ctacctcact gaggcaggac gggatgcctt tgacaggttc tgcaggctcc gtcatggaga
     1261 gctacaggcc ctcagtgggg gccttctaca ggccccgaag cctgtgctgg tggaggaaag
     1321 cgagctggtg aaagactcac tgaacgttct gctgggcgtt gtttctgcta cattttccct
     1381 gtgtcggccg actcaagcct ttgtagtgga gccgggtgtg catgtgtcag gtgcatctcc
     1441 tgaaagcatc agcagcatcc tctcagaggt ggcggagtat ggaacctgtt acacacggct
     1501 gagccatttc tctctgcaac ctgttgtagg ctccttgtgc agcaggggcc ttgttttcca
     1561 ggccttcacc agcggcctaa ggaggtactt gcagtattac cgtgcctgtg tgctctccac
     1621 tccacccacc ctcagtctcc tcaccattgg ctttctcttc aagaagctgg gccggcagct
     1681 caggtacttg gctgagcttt gtggtgttgg cactgtatcc ctggcgacca gtggagaacc
     1741 cagggctgtg ttccccactg gggtgaagct tctgtcctac ctctaccagg aagcactgga
     1801 taactgcagt aatgagcact atcccgtttt gctgtccctc ctgaagacca gctgtgagcc
     1861 ctacacacgg ttcatccacg attgggtgta cagtggagtc ttcagagatg tttatgggga
     1921 gttcatgatc caggttaacc atgagtacct cagcttcaga gacaagtttt actggaccca
     1981 tggctacgtg ctcatttcca aagaggtgga ggactgtgtt cctgtattct tgaaacacat
     2041 tgctcatgat gtgtatgtct gtgggaagac catcaaccta ctgaagctct gctgtccccg
     2101 gcattacctt tgttggtctg atgtccctgt ccctcggatc tcggtgattt tctctcttga
     2161 ggaactgaag gagattgaga aggactgtgc tgtctatgtt gggcggatgg agagagtcgc
     2221 acgtcatagc tgtatcagc
//
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