LOCUS AK052441 2239 bp mRNA linear HTC 24-JUL-2016
DEFINITION Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
library, clone:D430023H11 product:hypothetical Phospholipase A2
containing protein, full insert sequence.
ACCESSION AK052441
VERSION AK052441.1
KEYWORDS HTC; HTC_FLI; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
PUBMED 10349636
REFERENCE 2
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 3
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 4
AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
and Hayashizaki,Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 6
AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REFERENCE 7
AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
Wahlestedt,C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 8 (bases 1 to 2239)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) Contact:Yoshihide Hayashizaki The Institute
of Physical and Chemical Research (RIKEN), Omics Science Center,
RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D430023H11.
FEATURES Location/Qualifiers
source 1..2239
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="FANTOM_DB:D430023H11"
/db_xref="MGI:MGI:2421832"
/db_xref="taxon:10090"
/clone="D430023H11"
/tissue_type="lung"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/dev_stage="13 days embryo"
CDS 272..>2239
/note="unnamed protein product; hypothetical Phospholipase
A2 containing protein (InterPro|IPR001211, evidence:
InterPro);
putative"
/codon_start=1
/protein_id="BAC34992.1"
/translation="MASITQLFDDLCEALLPAAQARPGQRSVNRKRAKRSLKRVAYNA
LFANLFQEDTHQRQPDSSKLPVKNKVLMLSFDLRVGGLGPEADRLEELVEKLEAAPDC
PFVEVASVLDLLVQLAGSGPPQVLRRKRDYFFNNKHAGRNIPYSGYDCYDLSVFEMDV
RSFISGEENLCHHTVQEALQVMEAAPGTGLPTVGLFSIGDSCGDRFERDTRVSLFGAL
VHSRTYDMDVRLDLPPVPDSADFSGLAIKVPQIVDQWEDEGFQSASNLTPDSQSEPSM
TPDLDLWEAVLTYEASKRRCWERIGCPPGHREEPYLTEAGRDAFDRFCRLRHGELQAL
SGGLLQAPKPVLVEESELVKDSLNVLLGVVSATFSLCRPTQAFVVEPGVHVSGASPES
ISSILSEVAEYGTCYTRLSHFSLQPVVGSLCSRGLVFQAFTSGLRRYLQYYRACVLST
PPTLSLLTIGFLFKKLGRQLRYLAELCGVGTVSLATSGEPRAVFPTGVKLLSYLYQEA
LDNCSNEHYPVLLSLLKTSCEPYTRFIHDWVYSGVFRDVYGEFMIQVNHEYLSFRDKF
YWTHGYVLISKEVEDCVPVFLKHIAHDVYVCGKTINLLKLCCPRHYLCWSDVPVPRIS
VIFSLEELKEIEKDCAVYVGRMERVARHSCIS"
ORIGIN
1 ggtacgcatt cggtcggtaa acttgtcatg gtccgggaga gccgaggacg agcgccaggt
61 ggaggctgag ggctgttagg gtcgcggcgt gtggcctctt gcagtgcgaa acctgagacg
121 cggatgccgg gttgccgggt gtggagccac gggcggtccg ctttttgagc ctggctcacc
181 tacggtgagc tttggccttt gagagcatga agtgactcct aggtgcaaag tttaccagtc
241 aggagggtcc tgggctgaaa agagagtgac tatggccagc atcacccagc tgttcgatga
301 cctctgcgag gctctcttac ctgctgccca agctcgcccc ggccagcgca gtgtgaacag
361 gaagagggcg aagcggagcc ttaagagggt ggcctacaat gcccttttcg caaatctttt
421 tcaagaggac acccatcaac ggcagcccga ctcgtcgaag ctccccgtga aaaacaaggt
481 cctcatgctg tccttcgatt tgagggtggg gggcttgggg ccagaggctg accgtttgga
541 ggagctcgtg gagaaacttg aagcagcccc tgactgtcct tttgtggagg tagcatcagt
601 gttggacctc ttagttcagc tggcaggaag tggcccccct caagtgctgc gtagaaaacg
661 ggattacttc tttaacaaca agcatgcagg ccgaaacata ccctacagcg gctacgattg
721 ctatgacttg agtgtgtttg aaatggacgt tcggtcattt atctctgggg aggagaattt
781 gtgtcatcac acggtccagg aagcgcttca ggtgatggag gctgccccag gcactggcct
841 gcccaccgtt gggctcttct caattggtga ctcttgtggt gacaggtttg agagagacac
901 cagggtctcc ctctttggtg cacttgtgca tagccgcacc tatgacatgg atgtgcgact
961 ggacctacca cctgtgccag acagcgcgga cttctctgga ctagccatca aggtcccaca
1021 gattgtggat cagtgggaag atgaaggttt ccagtcagct tccaatttaa ctcccgactc
1081 ccagtctgaa ccaagcatga cccccgattt ggacctgtgg gaagctgtgc tcacatacga
1141 agccagcaag cggaggtgct gggagcgtat tggatgcccc cctggtcacc gagaggagcc
1201 ctacctcact gaggcaggac gggatgcctt tgacaggttc tgcaggctcc gtcatggaga
1261 gctacaggcc ctcagtgggg gccttctaca ggccccgaag cctgtgctgg tggaggaaag
1321 cgagctggtg aaagactcac tgaacgttct gctgggcgtt gtttctgcta cattttccct
1381 gtgtcggccg actcaagcct ttgtagtgga gccgggtgtg catgtgtcag gtgcatctcc
1441 tgaaagcatc agcagcatcc tctcagaggt ggcggagtat ggaacctgtt acacacggct
1501 gagccatttc tctctgcaac ctgttgtagg ctccttgtgc agcaggggcc ttgttttcca
1561 ggccttcacc agcggcctaa ggaggtactt gcagtattac cgtgcctgtg tgctctccac
1621 tccacccacc ctcagtctcc tcaccattgg ctttctcttc aagaagctgg gccggcagct
1681 caggtacttg gctgagcttt gtggtgttgg cactgtatcc ctggcgacca gtggagaacc
1741 cagggctgtg ttccccactg gggtgaagct tctgtcctac ctctaccagg aagcactgga
1801 taactgcagt aatgagcact atcccgtttt gctgtccctc ctgaagacca gctgtgagcc
1861 ctacacacgg ttcatccacg attgggtgta cagtggagtc ttcagagatg tttatgggga
1921 gttcatgatc caggttaacc atgagtacct cagcttcaga gacaagtttt actggaccca
1981 tggctacgtg ctcatttcca aagaggtgga ggactgtgtt cctgtattct tgaaacacat
2041 tgctcatgat gtgtatgtct gtgggaagac catcaaccta ctgaagctct gctgtccccg
2101 gcattacctt tgttggtctg atgtccctgt ccctcggatc tcggtgattt tctctcttga
2161 ggaactgaag gagattgaga aggactgtgc tgtctatgtt gggcggatgg agagagtcgc
2221 acgtcatagc tgtatcagc
//