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Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched library, clone:9330210E06 product:unclassifiable, full insert sequence

GenBank: AK136944.1

FASTA Graphics 

LOCUS       AK136944                2863 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus adult male diencephalon cDNA, RIKEN full-length
            enriched library, clone:9330210E06 product:unclassifiable, full
            insert sequence.
ACCESSION   AK136944
VERSION     AK136944.1
KEYWORDS    HTC; HTC_FLI; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
   PUBMED   10349636
REFERENCE   2
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   3
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
            Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
            Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
            Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
            Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
            Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
            Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   4
  AUTHORS   Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
            Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
            Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
            Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
            Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
            Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
            Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
            Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
            Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
            Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
            Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
            Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
            Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
            Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
            Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
            Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
            Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
            Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
            and Hayashizaki,Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5
  AUTHORS   Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
            Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
            Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
            Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
            Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
            Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
            Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
            Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
            Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
            Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
            Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
            Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
            Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
            Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
            Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
            Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
            Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
            Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
            Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
            Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
            Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
            Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
            Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
            Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
            Rogers,J., Birney,E. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   6
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
REFERENCE   7
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   8  (bases 1 to 2863)
  AUTHORS   Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
            Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
            Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N.,
            Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D.,
            Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A.,
            Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2004) Contact:Yoshihide Hayashizaki The Institute
            of Physical and Chemical Research (RIKEN), Omics Science Center,
            RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
            Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=9330210E06.
FEATURES             Location/Qualifiers
     source          1..2863
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="FANTOM_DB:9330210E06"
                     /db_xref="MGI:MGI:3540059"
                     /db_xref="taxon:10090"
                     /clone="9330210E06"
                     /sex="male"
                     /tissue_type="diencephalon"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /dev_stage="adult"
     misc_feature    1..2863
                     /note="putative;
                     unclassifiable"
ORIGIN      
        1 ggactctatg cccaacacta aatgagctat ttttaaagag caaggctcag gcaattccac
       61 tgttactagt tgtttgtttt ttatgggaac cttagtatcc aggatagttt ggtacttgaa
      121 attccccagc ctcgggtctc tgagtgaggg agaatagctg tgtgtgctac tatatatgac
      181 tagcctgctg ttttgtttgg attattattt atagctgttg ggttttatgt aactatattt
      241 ttttcaagaa caactcttgt tttggcacta attaagtgtg atattaattt tttaaggaaa
      301 agtaaaaaaa caaaaaacac catgttggct caatagcaaa tgacagtaga accaacagga
      361 aagcttgttg ggttctcagc tcatgtgctc catgacttct cactgaccat gctgtgctag
      421 ggtgagtgaa tccggacagc accggtacca cacactcttc tgatgtcctc ttggtgtgac
      481 aacactgata agagtctgaa atcttgtgca ggtttctaat gtactgggta ttccttgctg
      541 cgaatatata gctgagtatg gaatgtttgt ttacatgtaa ggaagcttat attgcagttg
      601 tagtaatcat ggatactgtt aacttggtgt tggttagagt atgaaacagg aaaaaaaaaa
      661 aggagtgtga aacagctgaa attgcccagt gatactggtg tgtaacagta taatgggaac
      721 tgggcactat tcctctactc tacaagtcag ccaatttacg tgggtttttt ttttgggggg
      781 ggggttgttt gtttgttttt ttctgagaca gtttctctgt gtgaccctgg ctgtcctgga
      841 actcactctg tggaccggct ggtctcgagc tcagaggtcc acctgcctct gcctcccgag
      901 tgctgggatt caaggcgtgc gcctttaaaa cgcccagccg ttttagtatt tttgcaggag
      961 agttagaaat cccaaactca tttctgctca acactattcc cagcaacttt tcttcaaaaa
     1021 aagtccaaac tgaaaacaac ctaaatgtca tcatcaggtg agtgaacaag aaatgtatgg
     1081 tgttctcatg gggtagaata ctatccagga atgaaataga accctctagg tcacattaga
     1141 aatagatgaa tccagccggg cagtggtggc gcacgccttt aattccagca ctcggggggc
     1201 agaggcgggg ggatttctgg gttcgaggcc agcctggtct gcagggtgag ttccaggaca
     1261 gccagggcta cacagagaaa ccctgtctgg aaaaaacaaa aacaaaaaaa caaaacaaaa
     1321 caaaaagaaa tagatgaatc tcaacaatat tatggaaagc aaaatgatgc catttacata
     1381 ttacctatga ggtagacgaa attgtttgga aaggtgggtt gatagaaata tatattttac
     1441 aaaatctgtg ggtcagaact cgtgaatatt gtcctgtgta aattcaaccc caatttaaat
     1501 ggtattataa aagggaaata accaataaag gaattgagta tacactatgg ctgagaactg
     1561 ttttaccata atgtcatttg ggctaacctg tatctgtgtt cttgagactc agttctaggg
     1621 cctgtggcat ctactggaga ttatggcagg aatcaggagg ccactgagca tggtgaatga
     1681 gagcacaggc aagctccatg gctacctgat gtacttgtca ctgtcatgta tgagacacct
     1741 gtgtgactgt ccagggagaa tgatcttaga aaagatcaac aatgatcaag aagataacac
     1801 agatcagagt agaaggtcct gcctctgctg acatgcccat actaagcttc ctttggaggc
     1861 ctttgatttt gtggattata gaaagaagta tttattcaga cgggagaata tagtcctgtt
     1921 ggtactgaac ttgtgttgat gttaatctga ggtcactgtt aaaacactag acaaccattg
     1981 agttttttgt attgttttta tgatggagtg agaaactaaa agatgattgg acagaaaaga
     2041 actccttgct ccatggtggg aatcatagga cttctgtctt gaccagttat gggaaaatta
     2101 aatgcagtac aacaactgaa gcttaagatt taagttggac tcagctctag cagtggcttt
     2161 tagggcacaa attagaatga gctgatttca aaaacaaaaa ccatacctat gttaaaggta
     2221 ccaaaagacc aactgcctga tgagaagttg gtgattgtgg agagttagaa atttgcagat
     2281 ccacagccaa acttctctta atcattttag tatagtagcc atttgtcaac cctgtctgga
     2341 tctgaattct catcttgttc cccaccgggg caactttggg aatgtattat gtcaacagac
     2401 cagtaacttg ccaccagaga agatctaaat cttttttaac ataatatctc cctggctttg
     2461 ctgaaaccca tttacctggt gctctcacta ttttgtgaat gtcttaattt gtgactttct
     2521 tttgttctgt aactataaaa aaattcatgt aactgcttct gtgatgaaat gtcatttggg
     2581 gtaacctgta tctgtgttct tgagacacaa taactcatat ttggcttaca ataaactctt
     2641 gtgttctctt agaggtgaac tggattgttg ttgacattag ctagcaagtc aacatcagag
     2701 atagaggaga aagaagatcc ctgttaacac agaaggcaca acaggttctc atacttcaag
     2761 gattttggta gctatcaaag agacagcagt gtttctattg gagctatgct atgtggtttt
     2821 ctttattggt cttttatgat gaaaataaag atgtctgttt agc
//
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