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PREDICTED: Rattus norvegicus mature T-cell proliferation 1 (Mtcp1), transcript variant X2, mRNA

NCBI Reference Sequence: XM_574098.7

FASTA Graphics 

LOCUS       XM_574098               1633 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus mature T-cell proliferation 1 (Mtcp1),
            transcript variant X2, mRNA.
ACCESSION   XM_574098
VERSION     XM_574098.7
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086036) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_574098.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1633
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1633
                     /gene="Mtcp1"
                     /note="mature T-cell proliferation 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 5 Proteins"
                     /db_xref="GeneID:498814"
                     /db_xref="RGD:1561352"
     CDS             295..618
                     /gene="Mtcp1"
                     /codon_start=1
                     /product="protein p13 MTCP-1"
                     /protein_id="XP_574098.2"
                     /db_xref="GeneID:498814"
                     /db_xref="RGD:1561352"
                     /translation="MAREDTGAPPTRLWVHCEGVYRDEHQRTWVAAAEEDTATLKARV
                     RRVPVPLGDASKPRDLLTSPLPLMWQLYPEGRYMDNKSRLWQIRRHSVVRGAQELLLQ
                     LLPET"
     polyA_site      1633
                     /gene="Mtcp1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cagagggagt gtagctcagt ggtcggccat ggacagcaga gcaccccgcg ctgtctgccc
       61 cctcgcctac cccagtttcg tttcccgaca ccgtaagctg tcacgtgatg cgcccaggtc
      121 acgcgatcga tgcgcgtgag gcttgattcc gccgcgcggt cgcccatccc gggtcgtgtg
      181 actcaatagg gagttcatcc tgacgtctcc cagtcacccc cgtgtcccgc gcgcgcggat
      241 gctgcaggct cgggtgcagg agagcagggc ccggactcga acccccagcc cgggatggcc
      301 cgagaggaca cgggggcccc gcccacccga ctctgggttc actgtgaggg tgtctaccgc
      361 gacgagcacc agcgcacgtg ggtcgctgct gcagaagagg acacagccac cctaaaggct
      421 cgggtccggc gagttccagt tcctctgggt gacgcttcga agccccgtga cctcctgacc
      481 tcaccgctgc ctctcatgtg gcagctctac cccgaggggc ggtacatgga caacaagtcc
      541 cgcctctggc agatccggcg tcattcagtg gtcagggggg cgcaggagct gctcctacaa
      601 cttctgccag aaacctgacc cgctacacgg tttcacttcc gcttcctgga acacgcgcga
      661 ttgtacttcc gcttcaagct gccgcccacc ctgggcctcc gggatggggg gaagggtggg
      721 gggaggaggg caagagcgga gcttcgaggg aagggctgtg gagagcgcgg cgtcatcatc
      781 accgggacag gttagcgcca tgcgagggca ggggcagagt cagggcccgg aagtgacgcc
      841 tttgggagca gccaccaaac cctcaatgga cgccgatggc ccaactcgca gcacctggga
      901 cccggtcgtg attgacatgg aagagagcgg catctgcagg gcccacgcgg gtttcccact
      961 cctggcgccg agcgctcaag ggattctggg agggaaagac gagtcgcacc tctgattggc
     1021 acctctcttt gattgacacc tctctcgtga ggccgtagcc accaacgttg ctgatcactg
     1081 ggcaccgtcc gtgggaactg tgaggaattt cgggggtgaa aacatgcaca gcggttcatt
     1141 cacatcgaag tcgggttttg ctttttggga taagtgtggg gcccagagca atggtgcgga
     1201 cctgaaattc cagctgtgtg ggagaccatt gtgtgcactt tgtatgttgt gtgcactttg
     1261 tatgttgtgt gtactttgta tgttgtgtgt actttgtatg ttgtgtgcta tttgactaca
     1321 ctgaattttt ccatgaacgt ttacatcctc cgcattaatg atccatgtaa tccgtctgtc
     1381 caattggtga ggaaagagta tttttagcgt gttcattttc ccagatgttg tgaggttaaa
     1441 ggtcattaca tgagccccag aaggaaatcc tgtgtgcaca ggctgcagag tctttacaac
     1501 tgaaactaaa aacaaaaggt gtatacataa tgtgtattat tatgttacac atgtatactt
     1561 ttttcatata tatatatttt tttgttgttg ttttagtctc ttggacatgc cgcggaagga
     1621 tccgtgccag aaa
//
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