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GenBank: ABCEGO000000000.1
LOCUS ABCEGO010000000 50 rc DNA linear BCT 30-AUG-2021 DEFINITION Escherichia coli strain ECOL-20-VL-NY-FL-0025, whole genome shotgun sequencing project. ACCESSION ABCEGO000000000 VERSION ABCEGO000000000.1 DBLINK BioProject: PRJNA324565 BioSample: SAMN21038398 Sequence Read Archive: SRR15668799 KEYWORDS WGS. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 50) CONSRTM Veterinary Laboratory Investigation and Response Network TITLE Direct Submission JOURNAL Submitted (30-AUG-2021) Center for Veterinary Medicine, US Food and Drug Administration, 8401 Muirkirk Rd, Laurel, MD, USA COMMENT The Escherichia coli whole genome shotgun (WGS) project has the project accession ABCEGO000000000. This version of the project (01) has the accession number ABCEGO010000000, and consists of sequences ABCEGO010000001-ABCEGO010000050. The annotation was added by the assembly submitters using the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about stand-alone PGAP can be found here: https://github.com/ncbi/pgap/ This draft WGS assembly was generated by running SKESA to generate a de-novo assembly. The de-novo assembly was then concatenated with contigs generated using a guided assembler using antimicrobial resistance genes as baits to comprehensively catalog the set of resistance genes in the isolate. Note, some parts of the contigs derived from the guided assembler may overlap de-novo contigs, and other guided assembler contigs. De-novo contigs can be differentiated from guided assembler contigs by their names , which include either 'denovo' or 'guided'. ##Genome-Assembly-Data-START## Assembly Date :: 30-AUG-2021 Assembly Method :: SKESA v. 2.2 Assembly Name :: PDT001119212.1 Long Assembly Name :: NCBI Pathogen Detection Assembly PDT001119212.1 Genome Coverage :: 53x Sequencing Technology :: ILLUMINA ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Date :: 08/30/2021 19:54:55 Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Provider :: NCBI Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Annotation Software revision :: 2021-01-11.build5132 Genes (total) :: 5,091 CDSs (total) :: 5,002 Genes (coding) :: 4,835 CDSs (with protein) :: 4,835 Genes (RNA) :: 89 rRNAs :: 1, 3, 3 (5S, 16S, 23S) complete rRNAs :: 1 (5S) partial rRNAs :: 3, 3 (16S, 23S) tRNAs :: 76 ncRNAs :: 6 Pseudo Genes (total) :: 167 CDSs (without protein) :: 167 Pseudo Genes (ambiguous residues) :: 0 of 167 Pseudo Genes (frameshifted) :: 91 of 167 Pseudo Genes (incomplete) :: 91 of 167 Pseudo Genes (internal stop) :: 45 of 167 Pseudo Genes (multiple problems) :: 55 of 167 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..50 /organism="Escherichia coli" /mol_type="genomic DNA" /strain="ECOL-20-VL-NY-FL-0025" /isolation_source="Urine (Canis lupus familiaris)" /host="Canis lupus familiaris" /db_xref="taxon:562" /geo_loc_name="USA: FL" /collection_date="2020-08-26" /collected_by="Florida Department of Agriculture and Consumer Services, Bronson Animal Disease Diagnostic Laboratory" WGS ABCEGO010000001-ABCEGO010000050 //
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