Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
GenBank: ABPDNR000000000.1
LOCUS ABPDNR010000000 37 rc DNA linear BCT 25-JAN-2024 DEFINITION Cronobacter sakazakii strain CFSAN135062, whole genome shotgun sequencing project. ACCESSION ABPDNR000000000 VERSION ABPDNR000000000.1 DBLINK BioProject: PRJNA258403 BioSample: SAMN38370670 Sequence Read Archive: SRR26919271 KEYWORDS WGS. SOURCE Cronobacter sakazakii ORGANISM Cronobacter sakazakii Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter. REFERENCE 1 (bases 1 to 37) CONSRTM GenomeTrakr network: Whole genome sequencing for foodborne pathogen traceback TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) Center for Food Safety and Applied Nutrition, US Food and Drug Administration, 5100 Paint Branch Pkwy, College Park, MD, USA COMMENT The Cronobacter sakazakii whole genome shotgun (WGS) project has the project accession ABPDNR000000000. This version of the project (01) has the accession number ABPDNR010000000, and consists of sequences ABPDNR010000001-ABPDNR010000037. The annotation was added by the assembly submitters using the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about stand-alone PGAP can be found here: https://github.com/ncbi/pgap/ This draft WGS assembly was generated by running SKESA to generate a de-novo assembly. The de-novo assembly was then concatenated with contigs generated using a guided assembler using antimicrobial resistance genes as baits to comprehensively catalog the set of resistance genes in the isolate. Note, some parts of the contigs derived from the guided assembler may overlap de-novo contigs, and other guided assembler contigs. De-novo contigs can be differentiated from guided assembler contigs by their names , which include either 'denovo' or 'guided'. ##Genome-Assembly-Data-START## Assembly Date :: 22-NOV-2023 Assembly Method :: SKESA v. 2.2 Assembly Name :: PDT001996205.1 Long Assembly Name :: NCBI Pathogen Detection Assembly PDT001996205.1 Genome Coverage :: 92x Sequencing Technology :: ILLUMINA ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Date :: 11/23/2023 02:25:15 Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Provider :: NCBI Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Annotation Software revision :: 2021-01-11.build5132 Genes (total) :: 4,298 CDSs (total) :: 4,209 Genes (coding) :: 4,123 CDSs (with protein) :: 4,123 Genes (RNA) :: 89 rRNAs :: 5, 2, 4 (5S, 16S, 23S) complete rRNAs :: 5 (5S) partial rRNAs :: 2, 4 (16S, 23S) tRNAs :: 69 ncRNAs :: 9 Pseudo Genes (total) :: 86 CDSs (without protein) :: 86 Pseudo Genes (ambiguous residues) :: 0 of 86 Pseudo Genes (frameshifted) :: 22 of 86 Pseudo Genes (incomplete) :: 56 of 86 Pseudo Genes (internal stop) :: 12 of 86 Pseudo Genes (multiple problems) :: 4 of 86 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..37 /organism="Cronobacter sakazakii" /mol_type="genomic DNA" /strain="CFSAN135062" /isolation_source="grain" /db_xref="taxon:28141" /geo_loc_name="USA" /collection_date="2023-03-01" /collected_by="FDA Contracted Laboratory" WGS ABPDNR010000001-ABPDNR010000037 //
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on