Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
GenBank: ABWONP000000000.1
LOCUS ABWONP010000000 43 rc DNA linear BCT 03-DEC-2024 DEFINITION Salmonella enterica strain IDR2400055918-02-10, whole genome shotgun sequencing project. ACCESSION ABWONP000000000 VERSION ABWONP000000000.1 DBLINK BioProject: PRJNA183850 BioSample: SAMN45144333 Sequence Read Archive: SRR31583884 KEYWORDS WGS. SOURCE Salmonella enterica ORGANISM Salmonella enterica Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 43) CONSRTM GenomeTrakr network: Whole genome sequencing for foodborne pathogen traceback TITLE Direct Submission JOURNAL Submitted (03-DEC-2024) Center for Food Safety and Applied Nutrition, US Food and Drug Administration, 5100 Paint Branch Pkwy, College Park, MD, USA COMMENT The Salmonella enterica whole genome shotgun (WGS) project has the project accession ABWONP000000000. This version of the project (01) has the accession number ABWONP010000000, and consists of sequences ABWONP010000001-ABWONP010000043. The annotation was added by the assembly submitters using the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about stand-alone PGAP can be found here: https://github.com/ncbi/pgap/ This draft WGS assembly was generated by running SKESA to generate a de-novo assembly. The de-novo assembly was then concatenated with contigs generated using a guided assembler using antimicrobial resistance genes as baits to comprehensively catalog the set of resistance genes in the isolate. Note, some parts of the contigs derived from the guided assembler may overlap de-novo contigs, and other guided assembler contigs. De-novo contigs can be differentiated from guided assembler contigs by their names , which include either 'denovo' or 'guided'. ##Genome-Assembly-Data-START## Assembly Date :: 03-DEC-2024 Assembly Method :: SKESA v. 2.2 Assembly Name :: PDT002505599.1 Long Assembly Name :: NCBI Pathogen Detection Assembly PDT002505599.1 Genome Coverage :: 62x Sequencing Technology :: ILLUMINA ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Date :: 12/03/2024 18:06:40 Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Provider :: NCBI Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Annotation Software revision :: 2024-07-18.build7555 Genes (total) :: 4,805 CDSs (total) :: 4,718 Genes (coding) :: 4,588 CDSs (with protein) :: 4,588 Genes (RNA) :: 87 rRNAs :: 3, 4, 2 (5S, 16S, 23S) complete rRNAs :: 3 (5S) partial rRNAs :: 4, 2 (16S, 23S) tRNAs :: 66 ncRNAs :: 12 Pseudo Genes (total) :: 130 CDSs (without protein) :: 130 Pseudo Genes (ambiguous residues) :: 0 of 130 Pseudo Genes (frameshifted) :: 61 of 130 Pseudo Genes (incomplete) :: 95 of 130 Pseudo Genes (internal stop) :: 27 of 130 Pseudo Genes (multiple problems) :: 47 of 130 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..43 /organism="Salmonella enterica" /mol_type="genomic DNA" /strain="IDR2400055918-02-10" /isolation_source="Wastewater influent" /db_xref="taxon:28901" /geo_loc_name="USA: NY" /collection_date="2024-08-15" /collected_by="New York State Department of Health" WGS ABWONP010000001-ABWONP010000043 //
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on