LOCUS AK076231 4163 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched
library, clone:4430402A21 product:cell division cycle 37 homolog
(S. cerevisiae)-like, full insert sequence.
ACCESSION AK076231
VERSION AK076231.1
KEYWORDS HTC; HTC_FLI; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
PUBMED 10349636
REFERENCE 2
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 3
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 4
AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
and Hayashizaki,Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 6
AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REFERENCE 7
AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
Wahlestedt,C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 8 (bases 1 to 4163)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) Contact:Yoshihide Hayashizaki The Institute
of Physical and Chemical Research (RIKEN), Omics Science Center,
RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4430402A21.
FEATURES Location/Qualifiers
source 1..4163
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="FANTOM_DB:4430402A21"
/db_xref="MGI:MGI:2390319"
/db_xref="taxon:10090"
/clone="4430402A21"
/tissue_type="liver"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/dev_stage="14 days embryo"
misc_feature 1..4163
/note="cell division cycle 37 homolog (S. cerevisiae)-like
(MGD|MGI:1914322 GB|NM_025950, evidence: BLASTN, 100%,
match=953);
putative"
ORIGIN
1 agtccgccgg gcggcacagt ccaggcctgc tccgggggtg catcggcttc gccaggggca
61 gagggattct gggtaacgac cgtggccggc cgggcggctg gctccgccca gcaggttcca
121 ctcacgccag ggccgttggc gctggcggtt gccgggcccg gaccagtggg acatggagca
181 gccgtggccg ccaccgggcc cctggagctt cccgaggact ggcggggaaa ccgaggagga
241 gagtgactta gacgtgtccc cctcttcgtc ccactactct ccggtaccgg acggcggcgc
301 ccagatgtat agccacggga ttgagctggc ttgccaaaag cagaaagaat ttgtgaagag
361 ctctgttgca tgtaaatgga atcttgctga agcccagcag aaacttggca gcttagcact
421 gcataactct gagtccttgg atcaggaaca cgccaaagca cagaccgcgg tgtcagaact
481 gaggcagcgg gaagaagagt ggcgacagaa agaagaggct ctggtccaaa gagagaggat
541 gtgtctctgg aacatggatg ccattagcaa ggatgttttt aataagagtt ttattaatca
601 agataaaaga aaaacagaag aggaagataa atcacaatca tttatgcaga aatatgagca
661 aaaaatcaga cattttggta tgttgagtcg ctgggatgac agtcagaggt ttttgtctga
721 ccacccacac ctcgtatgtg aagagactgc taaatatctt attttatggt gtttccacct
781 agaagctgag cagaaaggcg ctctaatgga acagatagca caccaagctg tggtaatgca
841 gtttattatg gaaatggcca aaaactgcaa tgtggatcca agaggctgtt ttcgtttgtt
901 tttccagaaa gccaaagcgg aggaagaagg ttattttgaa gcattcaaaa atgaacttga
961 agctttcaag tcaagagtaa gactttacgc tcaatcacaa agcttgcagc ctgtgacagt
1021 tcagaatcat gtcccccatt ctggtgttgg atgcataggc tccttagaat ccttaccaca
1081 ggtaagctgg aaaagggggt attgattacg taaatgcagt cacataattt tgttctttag
1141 gaccactgtt gaataatatt ttgtgaccac ttaaaatttt ctcacctcaa aacataagtg
1201 ttggacatgg cagaggcaga tgaatctctg agtttgaggc cagccttgat ctctgtagtg
1261 agttccaggc tagctagggc tacgtagaga gactgtctca aaattagtta gttagttgat
1321 tgattgattg ataaccctta gtcttatttc atgctttggc atttagtttc ttctgtctgt
1381 tagacacacc aaattctctc atttaaatat ggaaaggata agctgtacag tctttaggtc
1441 aagtgtcatg acctattggt catctcaatt aaaaactcaa ggtggctccc cataaacatg
1501 tcattaaaac aacactgttg gcagtttgtt tagcttgagg ctggccatgt gagtggtagc
1561 taaagggatc tgttgcatgg ctttttcgta gtcaatacct tgttaagtag ctctttttgt
1621 atgttatcta tccagttaat ggtagtcata gtattgggaa aaaaaaacaa aaaacagcca
1681 ctgaaaggaa gagggagccg accactagtg tagttgatag agcgttttag agctgtaaga
1741 tgtttcagac agaccctgcc cattgtgact ttagaagtag cagtttaata gagcccagtt
1801 atctctcatt tccaggctcc aagattttaa gaccagcttt agccagttta ttctgttgtc
1861 tacattggga catggaaagt gtcattcaga agacaatatg aggagagtcc tgtatttatc
1921 tataagcctc ataaaatggt aaaaaaattg agatttttca atttcttgac cttaggtcac
1981 tataatttta ccattttagt aacatgtatt taaaacagtt cttaaattta cattaacctt
2041 taacctaata tagtatataa agtagtaaag aatgcagatg atcacattta actcagccaa
2101 caacattttt acggatataa atatctacat tctggcttta aataattact agtgttctct
2161 tttaattaga cacattagga atagccccct aaagaatgcc tgcctgcagg tctcctcttt
2221 atttttaatt ttctaagatg tgttttattt tatatgtatg aaaatacttt gccttcatgt
2281 gtgtgtgtgt gtgcaccaca tgtgtacctg gtaccacaga gtccggaaga gggctttaga
2341 tcccctagac ctgctcctta caaatggttg tcagttgctg tgggtgcagg aattggaccc
2401 tagacctctg taagagcagc aagtgctcta aactgctgcg ccgtctccca gcccccaggc
2461 agttctttaa tgctatttaa atacagtatt gaagcagccc gtgagaaagc aggttttcca
2521 agggagtctt atgatgatgt tgagagcaat aaatacatct aaaattagtc acctgatgcg
2581 tccagaggaa caagagattt atagaatgtc attggttctt tacataaaac gagaacatta
2641 aaatacaagc agcctatatt atcagaaaga tgcttctggt ttgagagaag taaattaaaa
2701 gctgacacca gtggccaggc ctccattgcc atttgtggta gagcaggctg gagtcataga
2761 attttgtcat ttgcattatt tctattatgg ggaatcttca taatgaatca agaataatag
2821 accagttgtt ccctacaggg tgagaatata agcttcctga cctagacagc ctcagggaag
2881 gtgtgctgtt caggagtctt tctagttaca taaaattgtg acgagatgaa ggcagcggga
2941 ctaggagagg ccacctgagg gaccaagatg acaattttga ggtctgaaaa caacaatatt
3001 actacatatt actacaataa tggtatacca tttttatatc actttatgag ttatataata
3061 tgttatgtat catttaatcc ttataaaatg ctatgattat attaatccat gtttttagat
3121 aagtaaattg aaaattatga ggttaaatta ctttgcctaa agccagacag taagtgatgg
3181 ggctgatact ctaattttga ctctccttcc ccacttcccc actcttgagt cttgtgagtc
3241 atacatgagc agcagtcaag ctgagagtgc tggtgggcac acacactcac taggctttca
3301 gcatcagata gggcaaggat gctgattctc catggctggt gggtccatga gctctggaga
3361 atctcttcag ccaatacttg atactcagaa ttctgtcatg acagagttac tataagtttg
3421 atcttgaagg accctgaaat ctaaaatggg tgtcaagaaa aaggacttag gactactttg
3481 tggaagtaga ctaatataag agtattgatt gttttataaa gcttagaatt tggtaacact
3541 cttgatttta gtttttttta ctagtgaaga ggcctgtgaa atacaccatc cacaccatcc
3601 ttagcctgga tgagactcgg cgctggctcc tgggaggaag ggagcagctg cctcatgttc
3661 actctctggc ctttcctcct tgagtgatac gaatactaca tagaaacact aaaacacagt
3721 aaaaaggact ctggggaata atcaaattcg acctagcttt tgccctttac tgaagaaact
3781 gcagtgtggt agggtttcct ccctttagtt tttgtttgtt ttggtttttg gtttttgggt
3841 tttttttggc aagtttgact gttgtaatca aggttggtct tgaactgcta gatcctcttg
3901 cctgctagaa ttatgggaga gagtcattgt acttggcttg gaaagcattg cactttatta
3961 ggattaagac aaaaacagtt tccctgtgag atgagccatt tatgacatga tctccagtaa
4021 cctttgtctt cccactctcg ggaggctcag gcagcagagc tcagactgca ggccagcctg
4081 ggtgaagaag aaaaagccca tctcatttgg ataactttgt cactaatgtt tattaaaaac
4141 aaatgacatt aggtagtaaa agt
//