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Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730533H24 product:asparaginyl-tRNA synthetase, full insert sequence

GenBank: AK077699.1

FASTA Graphics 

LOCUS       AK077699                2617 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730533H24 product:asparaginyl-tRNA
            synthetase, full insert sequence.
ACCESSION   AK077699
VERSION     AK077699.1
KEYWORDS    HTC; HTC_FLI; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
   PUBMED   10349636
REFERENCE   2
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   3
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
            Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
            Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
            Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
            Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
            Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
            Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   4
  AUTHORS   Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
            Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
            Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
            Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
            Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
            Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
            Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
            Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
            Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
            Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
            Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
            Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
            Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
            Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
            Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
            Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
            Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
            Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
            and Hayashizaki,Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5
  AUTHORS   Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
            Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
            Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
            Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
            Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
            Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
            Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
            Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
            Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
            Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
            Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
            Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
            Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
            Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
            Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
            Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
            Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
            Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
            Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
            Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
            Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
            Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
            Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
            Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
            Rogers,J., Birney,E. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   6
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
REFERENCE   7
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   8  (bases 1 to 2617)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
            Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
            Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
            Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
            Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
            Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2002) Contact:Yoshihide Hayashizaki The Institute
            of Physical and Chemical Research (RIKEN), Omics Science Center,
            RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
            Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=5730533H24.
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="FANTOM_DB:5730533H24"
                     /db_xref="MGI:MGI:2393881"
                     /db_xref="taxon:10090"
                     /clone="5730533H24"
                     /tissue_type="whole body"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /dev_stage="8 days embryo"
     CDS             114..1757
                     /note="unnamed protein product; asparaginyl-tRNA
                     synthetase (MGD|MGI:1917473 GB|AK013880, evidence: BLASTN,
                     100%, match=1058);
                     putative"
                     /codon_start=1
                     /protein_id="BAC36965.1"
                     /translation="MVLELYVSDREGNDATGDGTKEKPFKTGLKALMTVGKEPFPTIY
                     VDSQKENERWDVISKSQMKNIKKMWRREQMKNDSREKKEAEDNLRREKNLEEAKKIII
                     KNDPSLPEPACVKISALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLS
                     DDLCQCYNGVVLSTESSVAVYGTLNLTPKGKQAPGGHELSCDFWELVGLAPAGGADNL
                     INEESDVDVQLNNRHMMIRGENMSKILKARSMITRCFRDHFFDRGYCEVTTPTLVQTQ
                     VEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALGDVFCIAQSYRAEQSRTRRHLAEF
                     THVEAECPFLTFEDLLNRLEDLVCDVVDRVLKSPVASIVYELNPNFKPPKRPFRRMNY
                     SDAIEWLKEHDVKKEDGTFYEFGDDIPEAPERLMTDTINEPILLCRFPVEIKSFYMQR
                     CPEDPRLTESVDVLMPNVGEIVGGSMRSWDSEEILEGYKREGIDPAPYYWYTDQRKYG
                     TCPHGGYGLGLERFLSWILNRYHIRDVCLYPRFLQRCRP"
     regulatory      2593..2598
                     /regulatory_class="polyA_signal_sequence"
                     /note="putative"
     polyA_site      2617
                     /note="putative"
ORIGIN      
        1 gaggtgatct gatgcaacgc ctcagtcaag gaagccttca gtgcacgttg gggtgagcag
       61 gcggcggtgg tgcagtgtct atgtcctcgg aggtgattag ggggactgca gagatggttc
      121 tagagctgta tgtatctgac cgagaaggaa atgacgcaac cggggatgga accaaggaga
      181 aaccatttaa aacaggccta aaggctttga tgacagttgg aaaagagcca tttcccacca
      241 tttatgtgga ctcacaaaag gaaaatgaga gatgggatgt tatttctaag tcacagatga
      301 agaacattaa aaagatgtgg cgcagagaac agatgaagaa cgactctagg gagaagaaag
      361 aggcagaaga taacttacga agagaaaaga acctggagga agcaaaaaaa attattatta
      421 aaaatgaccc gagcctgcca gagccggcct gtgtaaagat tagtgcatta gaaggataca
      481 gaggccagag agtgaaggtg tttggctggg tccacaggtt gcgcaggcaa ggaaagaatt
      541 tgatgttttt ggtgttgcga gatggtacgg gttatcttca gtgtgtcttg tcagatgact
      601 tgtgtcagtg ttacaatgga gtagtcctgt ccaccgagag tagtgtggcg gtgtacggaa
      661 cactaaacct aactccaaag ggcaaacagg ctccaggagg ccatgagctg agctgtgact
      721 tctgggaact ggtggggctg gccccggctg gaggagctga taacctgatc aacgaggagt
      781 ctgatgtgga tgtccagctc aacaaccggc acatgatgat ccggggagag aacatgtcca
      841 aaatcctgaa agcgcgctcc atgatcacca ggtgtttccg ggaccacttc ttcgacaggg
      901 gctactgtga agttaccact ccaacactgg tgcagacgca ggtggaaggt ggggccacgc
      961 tcttcaagct tgactatttc ggggaagaag cgtttttgac ccagtcctca cagttgtacc
     1021 tggagacctg ccttccagcc ctgggagatg ttttttgtat agcccagtca tacagggccg
     1081 aacagtccag gacacgaagg cacctggctg agttcactca cgtggaagct gagtgtcctt
     1141 tcctgacctt cgaggacctc ctgaaccgtt tagaggacct agtgtgtgat gtggtggaca
     1201 gagtcctgaa gtcaccagtg gcaagcatag tgtatgagct caacccgaac tttaaacccc
     1261 ccaagcggcc tttccgcagg atgaactact cggatgctat tgagtggctg aaggagcatg
     1321 atgtcaagaa agaagacggg actttctacg agtttggaga tgatattccc gaagcgcctg
     1381 agagactgat gacagacacc attaatgaac caatcctgct gtgtcgcttt cctgtggaga
     1441 tcaagtcttt ctatatgcag cgctgtcctg aggatcctcg acttactgaa tctgtggacg
     1501 tgttgatgcc caacgttggt gagattgtag gtggctcgat gcgctcctgg gacagtgagg
     1561 agattctcga aggctataag agggaaggga ttgaccccgc tccttactac tggtatacag
     1621 atcagagaaa atatggcacc tgtcctcatg gagggtatgg cttgggcttg gaacgatttc
     1681 ttagctggat tctgaacagg tatcacatcc gagatgtgtg cctgtaccct cgatttctcc
     1741 agcgctgcag gccataacca tggggccctc aagcacgaag gaaatgaaaa gttaagactg
     1801 cctctgcaaa agaacaaacg cccaaatcgt cccttgactt cctgttgggg gtagtagctt
     1861 tctcttgact ttcccattat cagaaaaagc agtaggtatc acttgaacat caagtgacat
     1921 tgatgctcct ttaatgaata tactcattac aaaattttga ggaaatatat gtcatgtcac
     1981 tctttagtat ggagatattt tattgtgcta taggttacaa tcattgtatt aaataaacca
     2041 tacatgatta tacagttttt aattatggtc tgacatccag taaaattcca tctttttgtc
     2101 cttttaagtg tcgctgggat tctcgaattc aagcatctaa aagagaaatt ggctgtttga
     2161 cataaaagat actggagtca aatacatagc cctttacatt cactgttagt cttttcctta
     2221 ttcatatagt gtttataatt ctgaggggta tgagttgaca ggggaaatta atgaagggga
     2281 aatggattat aatttgcaat gaacatgatt ggatggtggg ttattcaaat gattccaacc
     2341 ccgttagcct ttagtttaag aacggggcag atggggcttc cctctttgta attcctgagt
     2401 aacaaaagta aatctgtttg caaagacttt gcacctgaat cttagccacc gtagacagct
     2461 acgtcatccc tgcctggtcc ttgggtgcca tctgcactgc cttgccgact cagcagggct
     2521 accagtggct gaagtgcagt tgctctcccc agatgcatgc cgtgtgttct aatgggctgt
     2581 atcccactaa ccaataaatg agcagtggtt aaaaaac
//
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