LOCUS AK077699 2617 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:5730533H24 product:asparaginyl-tRNA
synthetase, full insert sequence.
ACCESSION AK077699
VERSION AK077699.1
KEYWORDS HTC; HTC_FLI; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
PUBMED 10349636
REFERENCE 2
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 3
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 4
AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
and Hayashizaki,Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 6
AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REFERENCE 7
AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
Wahlestedt,C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 8 (bases 1 to 2617)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) Contact:Yoshihide Hayashizaki The Institute
of Physical and Chemical Research (RIKEN), Omics Science Center,
RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5730533H24.
FEATURES Location/Qualifiers
source 1..2617
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="FANTOM_DB:5730533H24"
/db_xref="MGI:MGI:2393881"
/db_xref="taxon:10090"
/clone="5730533H24"
/tissue_type="whole body"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/dev_stage="8 days embryo"
CDS 114..1757
/note="unnamed protein product; asparaginyl-tRNA
synthetase (MGD|MGI:1917473 GB|AK013880, evidence: BLASTN,
100%, match=1058);
putative"
/codon_start=1
/protein_id="BAC36965.1"
/translation="MVLELYVSDREGNDATGDGTKEKPFKTGLKALMTVGKEPFPTIY
VDSQKENERWDVISKSQMKNIKKMWRREQMKNDSREKKEAEDNLRREKNLEEAKKIII
KNDPSLPEPACVKISALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLS
DDLCQCYNGVVLSTESSVAVYGTLNLTPKGKQAPGGHELSCDFWELVGLAPAGGADNL
INEESDVDVQLNNRHMMIRGENMSKILKARSMITRCFRDHFFDRGYCEVTTPTLVQTQ
VEGGATLFKLDYFGEEAFLTQSSQLYLETCLPALGDVFCIAQSYRAEQSRTRRHLAEF
THVEAECPFLTFEDLLNRLEDLVCDVVDRVLKSPVASIVYELNPNFKPPKRPFRRMNY
SDAIEWLKEHDVKKEDGTFYEFGDDIPEAPERLMTDTINEPILLCRFPVEIKSFYMQR
CPEDPRLTESVDVLMPNVGEIVGGSMRSWDSEEILEGYKREGIDPAPYYWYTDQRKYG
TCPHGGYGLGLERFLSWILNRYHIRDVCLYPRFLQRCRP"
regulatory 2593..2598
/regulatory_class="polyA_signal_sequence"
/note="putative"
polyA_site 2617
/note="putative"
ORIGIN
1 gaggtgatct gatgcaacgc ctcagtcaag gaagccttca gtgcacgttg gggtgagcag
61 gcggcggtgg tgcagtgtct atgtcctcgg aggtgattag ggggactgca gagatggttc
121 tagagctgta tgtatctgac cgagaaggaa atgacgcaac cggggatgga accaaggaga
181 aaccatttaa aacaggccta aaggctttga tgacagttgg aaaagagcca tttcccacca
241 tttatgtgga ctcacaaaag gaaaatgaga gatgggatgt tatttctaag tcacagatga
301 agaacattaa aaagatgtgg cgcagagaac agatgaagaa cgactctagg gagaagaaag
361 aggcagaaga taacttacga agagaaaaga acctggagga agcaaaaaaa attattatta
421 aaaatgaccc gagcctgcca gagccggcct gtgtaaagat tagtgcatta gaaggataca
481 gaggccagag agtgaaggtg tttggctggg tccacaggtt gcgcaggcaa ggaaagaatt
541 tgatgttttt ggtgttgcga gatggtacgg gttatcttca gtgtgtcttg tcagatgact
601 tgtgtcagtg ttacaatgga gtagtcctgt ccaccgagag tagtgtggcg gtgtacggaa
661 cactaaacct aactccaaag ggcaaacagg ctccaggagg ccatgagctg agctgtgact
721 tctgggaact ggtggggctg gccccggctg gaggagctga taacctgatc aacgaggagt
781 ctgatgtgga tgtccagctc aacaaccggc acatgatgat ccggggagag aacatgtcca
841 aaatcctgaa agcgcgctcc atgatcacca ggtgtttccg ggaccacttc ttcgacaggg
901 gctactgtga agttaccact ccaacactgg tgcagacgca ggtggaaggt ggggccacgc
961 tcttcaagct tgactatttc ggggaagaag cgtttttgac ccagtcctca cagttgtacc
1021 tggagacctg ccttccagcc ctgggagatg ttttttgtat agcccagtca tacagggccg
1081 aacagtccag gacacgaagg cacctggctg agttcactca cgtggaagct gagtgtcctt
1141 tcctgacctt cgaggacctc ctgaaccgtt tagaggacct agtgtgtgat gtggtggaca
1201 gagtcctgaa gtcaccagtg gcaagcatag tgtatgagct caacccgaac tttaaacccc
1261 ccaagcggcc tttccgcagg atgaactact cggatgctat tgagtggctg aaggagcatg
1321 atgtcaagaa agaagacggg actttctacg agtttggaga tgatattccc gaagcgcctg
1381 agagactgat gacagacacc attaatgaac caatcctgct gtgtcgcttt cctgtggaga
1441 tcaagtcttt ctatatgcag cgctgtcctg aggatcctcg acttactgaa tctgtggacg
1501 tgttgatgcc caacgttggt gagattgtag gtggctcgat gcgctcctgg gacagtgagg
1561 agattctcga aggctataag agggaaggga ttgaccccgc tccttactac tggtatacag
1621 atcagagaaa atatggcacc tgtcctcatg gagggtatgg cttgggcttg gaacgatttc
1681 ttagctggat tctgaacagg tatcacatcc gagatgtgtg cctgtaccct cgatttctcc
1741 agcgctgcag gccataacca tggggccctc aagcacgaag gaaatgaaaa gttaagactg
1801 cctctgcaaa agaacaaacg cccaaatcgt cccttgactt cctgttgggg gtagtagctt
1861 tctcttgact ttcccattat cagaaaaagc agtaggtatc acttgaacat caagtgacat
1921 tgatgctcct ttaatgaata tactcattac aaaattttga ggaaatatat gtcatgtcac
1981 tctttagtat ggagatattt tattgtgcta taggttacaa tcattgtatt aaataaacca
2041 tacatgatta tacagttttt aattatggtc tgacatccag taaaattcca tctttttgtc
2101 cttttaagtg tcgctgggat tctcgaattc aagcatctaa aagagaaatt ggctgtttga
2161 cataaaagat actggagtca aatacatagc cctttacatt cactgttagt cttttcctta
2221 ttcatatagt gtttataatt ctgaggggta tgagttgaca ggggaaatta atgaagggga
2281 aatggattat aatttgcaat gaacatgatt ggatggtggg ttattcaaat gattccaacc
2341 ccgttagcct ttagtttaag aacggggcag atggggcttc cctctttgta attcctgagt
2401 aacaaaagta aatctgtttg caaagacttt gcacctgaat cttagccacc gtagacagct
2461 acgtcatccc tgcctggtcc ttgggtgcca tctgcactgc cttgccgact cagcagggct
2521 accagtggct gaagtgcagt tgctctcccc agatgcatgc cgtgtgttct aatgggctgt
2581 atcccactaa ccaataaatg agcagtggtt aaaaaac
//