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Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930054O08 product:unclassifiable, full insert sequence

GenBank: AK081017.1

FASTA Graphics 

LOCUS       AK081017                3234 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930054O08 product:unclassifiable, full
            insert sequence.
ACCESSION   AK081017
VERSION     AK081017.1
KEYWORDS    HTC; HTC_FLI; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
   PUBMED   10349636
REFERENCE   2
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10 (10), 1617-1630 (2000)
   PUBMED   11042159
REFERENCE   3
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
            Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
            Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
            Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
            Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
            Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
            Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system--384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10 (11), 1757-1771 (2000)
   PUBMED   11076861
REFERENCE   4
  AUTHORS   Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
            Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
            Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
            Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
            Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
            Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
            Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
            Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
            Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
            Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
            Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
            Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
            Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
            Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
            Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
            Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
            Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
            Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
            and Hayashizaki,Y.
  CONSRTM   RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409 (6821), 685-690 (2001)
   PUBMED   11217851
REFERENCE   5
  AUTHORS   Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
            Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
            Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
            Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
            Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
            Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
            Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
            Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
            Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
            Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
            Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
            Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
            Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
            Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
            Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
            Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
            Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
            Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
            Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
            Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
            Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
            Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
            Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
            Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
            Rogers,J., Birney,E. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
            & II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420 (6915), 563-573 (2002)
   PUBMED   12466851
REFERENCE   6
  AUTHORS   Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
            Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
            Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
            Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
            Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
            Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
            Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
            Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
            di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
            Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
            Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
            Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
            Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
            Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
            Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
            Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
            Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
            Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
            Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
            Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
            Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
            Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
            Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
            Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
            Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
            Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
            Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
            Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
            Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
            Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
            Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
            Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
            Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
            Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
            Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
            Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
            Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
REFERENCE   7
  AUTHORS   Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
            Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
            Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
            Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
            Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
            Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
            Wahlestedt,C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
REFERENCE   8  (bases 1 to 3234)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
            Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
            Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
            Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
            Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
            Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-APR-2002) Contact:Yoshihide Hayashizaki The Institute
            of Physical and Chemical Research (RIKEN), Omics Science Center,
            RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
            Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=B930054O08.
FEATURES             Location/Qualifiers
     source          1..3234
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="FANTOM_DB:B930054O08"
                     /db_xref="MGI:MGI:2412933"
                     /db_xref="taxon:10090"
                     /clone="B930054O08"
                     /tissue_type="cerebellum"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /dev_stage="10 days neonate"
     misc_feature    1..3234
                     /note="putative;
                     unclassifiable"
ORIGIN      
        1 gatcctgaag cccggctccc ggaagactac aaggatcgga ataatgggga acttgggtgc
       61 ggacgacgcc ggggaaggag tgaccagaga agcgcggcgg gcgagcgagg aggagcggcg
      121 cgaccgggat ctgtcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa cccggcggca
      181 ggcaggctca cgccgagcca ctgcacccgg gctccgccaa ggccccaagt gggagcggca
      241 ctgccggagg gaggaggacc cggagccccg cgagccccgg ccgccgtttc cgcgcagccc
      301 cgggcgcgca ccgcccaccg ggagccccgg ccctttgcgc cggtccaacc tttgccccca
      361 aaatctgctg cctgagcggc cgccgccgga cctgtccgca cctgtcacca gccggggaca
      421 ccagcccacc gttcccgccc agttttccgc cagcctcggg gcccccgcgg gccccccgga
      481 ccccgttccc taccaggtgt cccctttccg gagcgaggtt ttgagcaccg tcgcgatgtc
      541 agaacgctgg gtgtccaggt ccgccgctcc gccttccgcc atcttcttcc actatcacgt
      601 agcggagacg acggctacga cgacggcacg ccccaagagc attgtgggaa agacgtcccc
      661 ggccccgcac tgccggcagg tctgtaccaa atgaggcgcg atggcggggg tctggaggcg
      721 tggctcgacg gggagcacgg cgggtgcgcg cttgcgccct gctgccccct cgggtccccg
      781 cacgcacaac agcacggcgt ggtcgccgcc gccgccccag acctctgagt ttgcacggtt
      841 ctcaccgggt gccgcgcttt ctctccctgc atttgccctg ccctgctcgg actctccttg
      901 ccatgctggc ccttttcttg ccgcagccgc ctccaaaccc atgtttttgc gggttcactc
      961 ctactggagg gcggggccgg ctgggacatg gcagaaagcg cgcagttccg tgacttgggg
     1021 cttttccttt ccagccgcag agcccaagcc cactgaatat tggcacaaag agggctctga
     1081 aaccaaaggt ttgggcgcag tgcccttcct aggttcttcc cagctctccc atgcttgctg
     1141 tctgtaggga cttctacctt tcataagctc tttgtgacgc ctcctagcgc gcgtggacac
     1201 acacacacac acacacacac acacacacac acacacacac gttagctgca gtgcaaaaca
     1261 tgtcccagtt tctaggtgaa caagcagtta aagatgtatt gaataaggcc aggtactgaa
     1321 gggggttaga aacgtgggag aaacctcatg ggcgtcaaat tagcattccc ctagattaaa
     1381 tttcatggtt gtatatgcct aaagttagac tcgataatac aagctgcatt tgaaggcaac
     1441 aattacaaac ggggaaattg agcctcttaa aaatcaaatg ccaaggtcac acggcaactg
     1501 gaagtgcaag gttatcgcac agatttcaaa tccccagtac tcagtacctc catgaaaggc
     1561 tgaattaaga tacaaactcc gtaaaagctg caactaagtt ctctttataa tttggcgtgt
     1621 gagtgtgcgt gtgtgtgcgt gtgtgtgcgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     1681 gtgtgtgcac tgcggtttaa tggtctagta ccattctaca ccatttgagg caaacgtttc
     1741 aaaattaact aaggcaaaac tgctgtttct aagaatgaag acggctacct cagtagaaca
     1801 gtaggtgaca agttaaagga tgggcaatgg tctctccatt ttttaagcct cctagttttg
     1861 gtgggaaact cagtaaggaa gggggtgcct gcattagtga ggactgctgg cccatccaag
     1921 agaaagcagt gtttccctgg ttagggtttg tcagcttgac agaaactaaa gtcacttgga
     1981 aagaggggaa ccttaattat gggattgcct cccttagagt agcctgtgat gagtcagtgg
     2041 agcattttct tgtttaacga tcggtgtggt aaacccactg tgggcaggtg gtcctgagtt
     2101 gtgtaagaaa acaagctgag caagccataa aaagcagtgt ccgtccacgt actctgctct
     2161 gggttcctgt tgagctctgg ctgtgacctt cccctagcgt aagccaccca gaccctttct
     2221 ttcctaagtt gcctttggtc agaatgcttt gttgcagcaa tagaaaacaa ctagcacaac
     2281 cggtgtgtat tggcgtcata cttgagtgag tcagtatgtg actgcttgtt tctgcgcagt
     2341 actctctttg tattacttca gcctcaatga gtctaaaagt catttccatt tacggctatt
     2401 tcttatgtta tttgaccact cctgattata aaaccgagtt ttcctaacta tggacattct
     2461 cagttgttat atatccacac cccccatccc catcttctac cactctgtga aggaaagcaa
     2521 agtaagtttt caaagagaga caacttggta tgcaaagaat atgctgtatc ctcatacata
     2581 catggcttcg gatctctagc tgccaacact taatctgtag tctatttaca aatttaaata
     2641 gtataatatt tatcttaaag gattttaaaa gcatgcagtg catttatttt ctagatgagt
     2701 tgagtgtgtg cctgtgacag cctactgtgg agatcacaag tcaacgttgc aggcgtcagc
     2761 tctctctact atgagggtct caggggatca gacttgggta agtcacaatt atgcctgctg
     2821 agccaaattg ccaacctagc cttttaacag tttttgaact ttactttatc ttatttttca
     2881 gaaaggatcc catgcgtccc aggttgtcag tgcaacagaa gatgactttg aacttatctg
     2941 atctgtctgc ttccgcctcc ccagttctgg gatgtttctg cagcactggg catcaagccc
     3001 agggtttcgt gcttgctatg taagcactct tctgcctgag tcctatctct agaccccatt
     3061 aaggattttt ttttctaaaa aaaaaaaaaa atgaagatta aatgaaacaa tatgagtttg
     3121 ttgcctggaa cttaatagcc aatcaacaaa tgttagtagg aagaattgga ctgatatcag
     3181 gataaattgt atagtatgtg tgttatatct caataaagct attcttaaca aagc
//
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