LOCUS AK081017 3234 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
enriched library, clone:B930054O08 product:unclassifiable, full
insert sequence.
ACCESSION AK081017
VERSION AK081017.1
KEYWORDS HTC; HTC_FLI; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
PUBMED 10349636
REFERENCE 2
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10 (10), 1617-1630 (2000)
PUBMED 11042159
REFERENCE 3
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P.,
Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M.,
Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A.,
Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K.,
Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M.,
Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J.,
Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system--384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10 (11), 1757-1771 (2000)
PUBMED 11076861
REFERENCE 4
AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y.,
Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S.,
Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I.,
Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R.,
Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T.,
Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H.,
Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G.,
Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M.,
Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H.,
Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N.,
Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C.,
Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D.,
Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P.,
Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P.,
Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H.,
Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H.,
Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L.,
Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S.
and Hayashizaki,Y.
CONSRTM RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409 (6821), 685-690 (2001)
PUBMED 11217851
REFERENCE 5
AUTHORS Okazaki,Y., Furuno,M., Kasukawa,T., Adachi,J., Bono,H., Kondo,S.,
Nikaido,I., Osato,N., Saito,R., Suzuki,H., Yamanaka,I.,
Kiyosawa,H., Yagi,K., Tomaru,Y., Hasegawa,Y., Nogami,A.,
Schonbach,C., Gojobori,T., Baldarelli,R., Hill,D.P., Bult,C.,
Hume,D.A., Quackenbush,J., Schriml,L.M., Kanapin,A., Matsuda,H.,
Batalov,S., Beisel,K.W., Blake,J.A., Bradt,D., Brusic,V.,
Chothia,C., Corbani,L.E., Cousins,S., Dalla,E., Dragani,T.A.,
Fletcher,C.F., Forrest,A., Frazer,K.S., Gaasterland,T.,
Gariboldi,M., Gissi,C., Godzik,A., Gough,J., Grimmond,S.,
Gustincich,S., Hirokawa,N., Jackson,I.J., Jarvis,E.D., Kanai,A.,
Kawaji,H., Kawasawa,Y., Kedzierski,R.M., King,B.L., Konagaya,A.,
Kurochkin,I.V., Lee,Y., Lenhard,B., Lyons,P.A., Maglott,D.R.,
Maltais,L., Marchionni,L., McKenzie,L., Miki,H., Nagashima,T.,
Numata,K., Okido,T., Pavan,W.J., Pertea,G., Pesole,G.,
Petrovsky,N., Pillai,R., Pontius,J.U., Qi,D., Ramachandran,S.,
Ravasi,T., Reed,J.C., Reed,D.J., Reid,J., Ring,B.Z., Ringwald,M.,
Sandelin,A., Schneider,C., Semple,C.A., Setou,M., Shimada,K.,
Sultana,R., Takenaka,Y., Taylor,M.S., Teasdale,R.D., Tomita,M.,
Verardo,R., Wagner,L., Wahlestedt,C., Wang,Y., Watanabe,Y.,
Wells,C., Wilming,L.G., Wynshaw-Boris,A., Yanagisawa,M., Yang,I.,
Yang,L., Yuan,Z., Zavolan,M., Zhu,Y., Zimmer,A., Carninci,P.,
Hayatsu,N., Hirozane-Kishikawa,T., Konno,H., Nakamura,M.,
Sakazume,N., Sato,K., Shiraki,T., Waki,K., Kawai,J., Aizawa,K.,
Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Miyazaki,A., Sakai,K., Sasaki,D., Shibata,K.,
Shinagawa,A., Yasunishi,A., Yoshino,M., Waterston,R., Lander,E.S.,
Rogers,J., Birney,E. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I
& II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420 (6915), 563-573 (2002)
PUBMED 12466851
REFERENCE 6
AUTHORS Carninci,P., Kasukawa,T., Katayama,S., Gough,J., Frith,M.C.,
Maeda,N., Oyama,R., Ravasi,T., Lenhard,B., Wells,C., Kodzius,R.,
Shimokawa,K., Bajic,V.B., Brenner,S.E., Batalov,S., Forrest,A.R.,
Zavolan,M., Davis,M.J., Wilming,L.G., Aidinis,V., Allen,J.E.,
Ambesi-Impiombato,A., Apweiler,R., Aturaliya,R.N., Bailey,T.L.,
Bansal,M., Baxter,L., Beisel,K.W., Bersano,T., Bono,H., Chalk,A.M.,
Chiu,K.P., Choudhary,V., Christoffels,A., Clutterbuck,D.R.,
Crowe,M.L., Dalla,E., Dalrymple,B.P., de Bono,B., Della Gatta,G.,
di Bernardo,D., Down,T., Engstrom,P., Fagiolini,M., Faulkner,G.,
Fletcher,C.F., Fukushima,T., Furuno,M., Futaki,S., Gariboldi,M.,
Georgii-Hemming,P., Gingeras,T.R., Gojobori,T., Green,R.E.,
Gustincich,S., Harbers,M., Hayashi,Y., Hensch,T.K., Hirokawa,N.,
Hill,D., Huminiecki,L., Iacono,M., Ikeo,K., Iwama,A., Ishikawa,T.,
Jakt,M., Kanapin,A., Katoh,M., Kawasawa,Y., Kelso,J., Kitamura,H.,
Kitano,H., Kollias,G., Krishnan,S.P., Kruger,A., Kummerfeld,S.K.,
Kurochkin,I.V., Lareau,L.F., Lazarevic,D., Lipovich,L., Liu,J.,
Liuni,S., McWilliam,S., Madan Babu,M., Madera,M., Marchionni,L.,
Matsuda,H., Matsuzawa,S., Miki,H., Mignone,F., Miyake,S.,
Morris,K., Mottagui-Tabar,S., Mulder,N., Nakano,N., Nakauchi,H.,
Ng,P., Nilsson,R., Nishiguchi,S., Nishikawa,S., Nori,F., Ohara,O.,
Okazaki,Y., Orlando,V., Pang,K.C., Pavan,W.J., Pavesi,G.,
Pesole,G., Petrovsky,N., Piazza,S., Reed,J., Reid,J.F., Ring,B.Z.,
Ringwald,M., Rost,B., Ruan,Y., Salzberg,S.L., Sandelin,A.,
Schneider,C., Schonbach,C., Sekiguchi,K., Semple,C.A., Seno,S.,
Sessa,L., Sheng,Y., Shibata,Y., Shimada,H., Shimada,K., Silva,D.,
Sinclair,B., Sperling,S., Stupka,E., Sugiura,K., Sultana,R.,
Takenaka,Y., Taki,K., Tammoja,K., Tan,S.L., Tang,S., Taylor,M.S.,
Tegner,J., Teichmann,S.A., Ueda,H.R., van Nimwegen,E., Verardo,R.,
Wei,C.L., Yagi,K., Yamanishi,H., Zabarovsky,E., Zhu,S., Zimmer,A.,
Hide,W., Bult,C., Grimmond,S.M., Teasdale,R.D., Liu,E.T.,
Brusic,V., Quackenbush,J., Wahlestedt,C., Mattick,J.S., Hume,D.A.,
Kai,C., Sasaki,D., Tomaru,Y., Fukuda,S., Kanamori-Katayama,M.,
Suzuki,M., Aoki,J., Arakawa,T., Iida,J., Imamura,K., Itoh,M.,
Kato,T., Kawaji,H., Kawagashira,N., Kawashima,T., Kojima,M.,
Kondo,S., Konno,H., Nakano,K., Ninomiya,N., Nishio,T., Okada,M.,
Plessy,C., Shibata,K., Shiraki,T., Suzuki,S., Tagami,M., Waki,K.,
Watahiki,A., Okamura-Oho,Y., Suzuki,H., Kawai,J. and Hayashizaki,Y.
CONSRTM FANTOM Consortium; RIKEN Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The transcriptional landscape of the mammalian genome
JOURNAL Science 309 (5740), 1559-1563 (2005)
PUBMED 16141072
REFERENCE 7
AUTHORS Katayama,S., Tomaru,Y., Kasukawa,T., Waki,K., Nakanishi,M.,
Nakamura,M., Nishida,H., Yap,C.C., Suzuki,M., Kawai,J., Suzuki,H.,
Carninci,P., Hayashizaki,Y., Wells,C., Frith,M., Ravasi,T.,
Pang,K.C., Hallinan,J., Mattick,J., Hume,D.A., Lipovich,L.,
Batalov,S., Engstrom,P.G., Mizuno,Y., Faghihi,M.A., Sandelin,A.,
Chalk,A.M., Mottagui-Tabar,S., Liang,Z., Lenhard,B. and
Wahlestedt,C.
CONSRTM RIKEN Genome Exploration Research Group; Genome Science Group
(Genome Network Project Core Group); FANTOM Consortium
TITLE Antisense transcription in the mammalian transcriptome
JOURNAL Science 309 (5740), 1564-1566 (2005)
PUBMED 16141073
REFERENCE 8 (bases 1 to 3234)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P.,
Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T.,
Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T.,
Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N.,
Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A.,
Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) Contact:Yoshihide Hayashizaki The Institute
of Physical and Chemical Research (RIKEN), Omics Science Center,
RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama,
Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=B930054O08.
FEATURES Location/Qualifiers
source 1..3234
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6J"
/db_xref="FANTOM_DB:B930054O08"
/db_xref="MGI:MGI:2412933"
/db_xref="taxon:10090"
/clone="B930054O08"
/tissue_type="cerebellum"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/dev_stage="10 days neonate"
misc_feature 1..3234
/note="putative;
unclassifiable"
ORIGIN
1 gatcctgaag cccggctccc ggaagactac aaggatcgga ataatgggga acttgggtgc
61 ggacgacgcc ggggaaggag tgaccagaga agcgcggcgg gcgagcgagg aggagcggcg
121 cgaccgggat ctgtcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa cccggcggca
181 ggcaggctca cgccgagcca ctgcacccgg gctccgccaa ggccccaagt gggagcggca
241 ctgccggagg gaggaggacc cggagccccg cgagccccgg ccgccgtttc cgcgcagccc
301 cgggcgcgca ccgcccaccg ggagccccgg ccctttgcgc cggtccaacc tttgccccca
361 aaatctgctg cctgagcggc cgccgccgga cctgtccgca cctgtcacca gccggggaca
421 ccagcccacc gttcccgccc agttttccgc cagcctcggg gcccccgcgg gccccccgga
481 ccccgttccc taccaggtgt cccctttccg gagcgaggtt ttgagcaccg tcgcgatgtc
541 agaacgctgg gtgtccaggt ccgccgctcc gccttccgcc atcttcttcc actatcacgt
601 agcggagacg acggctacga cgacggcacg ccccaagagc attgtgggaa agacgtcccc
661 ggccccgcac tgccggcagg tctgtaccaa atgaggcgcg atggcggggg tctggaggcg
721 tggctcgacg gggagcacgg cgggtgcgcg cttgcgccct gctgccccct cgggtccccg
781 cacgcacaac agcacggcgt ggtcgccgcc gccgccccag acctctgagt ttgcacggtt
841 ctcaccgggt gccgcgcttt ctctccctgc atttgccctg ccctgctcgg actctccttg
901 ccatgctggc ccttttcttg ccgcagccgc ctccaaaccc atgtttttgc gggttcactc
961 ctactggagg gcggggccgg ctgggacatg gcagaaagcg cgcagttccg tgacttgggg
1021 cttttccttt ccagccgcag agcccaagcc cactgaatat tggcacaaag agggctctga
1081 aaccaaaggt ttgggcgcag tgcccttcct aggttcttcc cagctctccc atgcttgctg
1141 tctgtaggga cttctacctt tcataagctc tttgtgacgc ctcctagcgc gcgtggacac
1201 acacacacac acacacacac acacacacac acacacacac gttagctgca gtgcaaaaca
1261 tgtcccagtt tctaggtgaa caagcagtta aagatgtatt gaataaggcc aggtactgaa
1321 gggggttaga aacgtgggag aaacctcatg ggcgtcaaat tagcattccc ctagattaaa
1381 tttcatggtt gtatatgcct aaagttagac tcgataatac aagctgcatt tgaaggcaac
1441 aattacaaac ggggaaattg agcctcttaa aaatcaaatg ccaaggtcac acggcaactg
1501 gaagtgcaag gttatcgcac agatttcaaa tccccagtac tcagtacctc catgaaaggc
1561 tgaattaaga tacaaactcc gtaaaagctg caactaagtt ctctttataa tttggcgtgt
1621 gagtgtgcgt gtgtgtgcgt gtgtgtgcgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
1681 gtgtgtgcac tgcggtttaa tggtctagta ccattctaca ccatttgagg caaacgtttc
1741 aaaattaact aaggcaaaac tgctgtttct aagaatgaag acggctacct cagtagaaca
1801 gtaggtgaca agttaaagga tgggcaatgg tctctccatt ttttaagcct cctagttttg
1861 gtgggaaact cagtaaggaa gggggtgcct gcattagtga ggactgctgg cccatccaag
1921 agaaagcagt gtttccctgg ttagggtttg tcagcttgac agaaactaaa gtcacttgga
1981 aagaggggaa ccttaattat gggattgcct cccttagagt agcctgtgat gagtcagtgg
2041 agcattttct tgtttaacga tcggtgtggt aaacccactg tgggcaggtg gtcctgagtt
2101 gtgtaagaaa acaagctgag caagccataa aaagcagtgt ccgtccacgt actctgctct
2161 gggttcctgt tgagctctgg ctgtgacctt cccctagcgt aagccaccca gaccctttct
2221 ttcctaagtt gcctttggtc agaatgcttt gttgcagcaa tagaaaacaa ctagcacaac
2281 cggtgtgtat tggcgtcata cttgagtgag tcagtatgtg actgcttgtt tctgcgcagt
2341 actctctttg tattacttca gcctcaatga gtctaaaagt catttccatt tacggctatt
2401 tcttatgtta tttgaccact cctgattata aaaccgagtt ttcctaacta tggacattct
2461 cagttgttat atatccacac cccccatccc catcttctac cactctgtga aggaaagcaa
2521 agtaagtttt caaagagaga caacttggta tgcaaagaat atgctgtatc ctcatacata
2581 catggcttcg gatctctagc tgccaacact taatctgtag tctatttaca aatttaaata
2641 gtataatatt tatcttaaag gattttaaaa gcatgcagtg catttatttt ctagatgagt
2701 tgagtgtgtg cctgtgacag cctactgtgg agatcacaag tcaacgttgc aggcgtcagc
2761 tctctctact atgagggtct caggggatca gacttgggta agtcacaatt atgcctgctg
2821 agccaaattg ccaacctagc cttttaacag tttttgaact ttactttatc ttatttttca
2881 gaaaggatcc catgcgtccc aggttgtcag tgcaacagaa gatgactttg aacttatctg
2941 atctgtctgc ttccgcctcc ccagttctgg gatgtttctg cagcactggg catcaagccc
3001 agggtttcgt gcttgctatg taagcactct tctgcctgag tcctatctct agaccccatt
3061 aaggattttt ttttctaaaa aaaaaaaaaa atgaagatta aatgaaacaa tatgagtttg
3121 ttgcctggaa cttaatagcc aatcaacaaa tgttagtagg aagaattgga ctgatatcag
3181 gataaattgt atagtatgtg tgttatatct caataaagct attcttaaca aagc
//