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Saccharomyces cerevisiae YJM1199 chromosome XIV, partial sequence

GenBank: CP005532.2

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LOCUS       CP005532                1443 bp    DNA     linear   PLN 13-MAY-2016
DEFINITION  Saccharomyces cerevisiae YJM1199 chromosome XIV, partial sequence.
ACCESSION   CP005532 REGION: 710110..711552
VERSION     CP005532.2
DBLINK      BioProject: PRJNA189883
            BioSample: SAMN01923149
KEYWORDS    .
SOURCE      Saccharomyces cerevisiae YJM1199
  ORGANISM  Saccharomyces cerevisiae YJM1199
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Saccharomycetaceae;
            Saccharomyces.
REFERENCE   1  (bases 1 to 1443)
  AUTHORS   Strope,P.K., Skelly,D.A., Kozmin,S.G., Mahadevan,G., Stone,E.A.,
            Magwene,P.M., Dietrich,F.S. and McCusker,J.H.
  TITLE     The 100-genomes strains, an S. cerevisiae resource that illuminates
            its natural phenotypic and genotypic variation and emergence as an
            opportunistic pathogen
  JOURNAL   Genome Res. (2015) In press
   PUBMED   25840857
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 1443)
  AUTHORS   Strope,P.K., Dietrich,F.S., Kozmin,S.G. and McCusker,J.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-APR-2013) Molecular Genetics and Microbiology and
            Institute for Genome Sciences & Policy, Duke University, 287 CARL
            building Research Drive, Durham, NC 27710, USA
REFERENCE   3  (bases 1 to 1443)
  AUTHORS   Strope,P.K., Dietrich,F.S. and McCusker,J.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2016) Molecular Genetics and Microbiology
            Department, Duke University, 287 CARL building Research Drive,
            Durham, NC 27710, USA
  REMARK    Sequence update by submitter
COMMENT     On May 13, 2016 this sequence version replaced CP005532.1.
            Scaffolding and annotation based on Saccharomyces cerevisiae S288C
            chromosome XIV NC_001146.8.
            
            ##Genome-Assembly-Data-START##
            Assembly Method           :: ABySS v. 1.3.4, Velvet v. 1.2.01,
                                         pilon v. 1.13, in-house pair checking,
                                         depth of coverage analysis and
                                         localized alignment tools, hand edited
            Reference-guided Assembly :: NC_001146.8
            Genome Coverage           :: 60x
            Sequencing Technology     :: Illumina Hiseq, 100x100 bp paired-end
                                         reads
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1443
                     /organism="Saccharomyces cerevisiae YJM1199"
                     /mol_type="genomic DNA"
                     /strain="YJM1199"
                     /isolation_source="clinical"
                     /db_xref="taxon:1294335"
                     /chromosome="XIV"
                     /geo_loc_name="USA: MI"
     gene            <1..>1443
                     /gene="BIO3"
                     /locus_tag="H783_YJM1199N00390"
     mRNA            <1..>1443
                     /gene="BIO3"
                     /locus_tag="H783_YJM1199N00390"
                     /product="Bio3p"
     CDS             1..1443
                     /gene="BIO3"
                     /locus_tag="H783_YJM1199N00390"
                     /note="corresponds to s288c YNR058W"
                     /codon_start=1
                     /product="Bio3p"
                     /protein_id="AJT15701.1"
                     /db_xref="SGD:S000005341"
                     /translation="MSQEISYTPDVAELLDFDKKHIWHPYTSLSSPLNVYPVKSAHGC
                     KLVLDTDSPVDVEVIDAMSSWWCVIHGYNNPELNEALTKQMLKFSHVLLGGFTHKGAV
                     NLVQKLLKVIDEPSLQYCFLADSGSVAVEVALKMALQSNMSGEATKNRTKFLTIKNGY
                     HGDTFGAMSVCDPENSMHHIYNDRLSENIFAQAPSIVDGLPTSQNGFEDHWNAEEVTD
                     LKKQFELHSDKICAVILEPILQGAGGLRPYHPQFLIEVQKLCNQYDVLFIMDEIATGF
                     GRTGEIFAFKHCQKYQDQHGISPSDQIKVVPDILCVGKGLTSGYMTMSAVVVNDKVAS
                     RISSPNSPTGGCFMHGPTFMGNALACSVAEKSMDILLRGEWRKQVSAIENQIYRELYQ
                     YIKNPDNGLIGTVVKRVSVIGAVGIVELYKKTDPEWFQKKFISKGVHIRPFNCLCYIM
                     PPYVITTEELTKVNQVLIEVLHEWKSHINQ"
ORIGIN      
        1 atgtcccaag aaatttcata tacaccagat gtcgcggaac tgctagactt tgataaaaaa
       61 catatttggc atccttatac gtcattgagt tcaccattga acgtttatcc ggtaaagagt
      121 gctcacggat gcaagctggt gttggatacc gactcaccag tggacgtcga ggtgatcgac
      181 gccatgtcgt cgtggtggtg tgttattcac gggtacaata atccagaact aaatgaggcc
      241 cttaccaagc agatgttaaa gttttctcac gtccttcttg gtggattcac ccataaagga
      301 gctgtgaatc tagtccaaaa acttttaaaa gtgattgatg aaccctcttt gcagtactgt
      361 ttcctcgcag attctggctc agtagcagtg gaagtagctt tgaagatggc tttacaatca
      421 aacatgtcag gggaagctac taaaaataga acaaagtttt tgacaatcaa gaacgggtat
      481 catggtgata catttggcgc tatgagtgtt tgtgatcctg agaattctat gcatcatatc
      541 tacaacgatc gactcagtga gaacatcttc gcccaagctc cctctattgt cgatggcctt
      601 ccaaccagcc agaacggttt cgaggaccat tggaatgcag aagaagttac cgatctcaag
      661 aagcaatttg aattgcatag tgataagatc tgtgctgtga ttttggagcc tatcttacag
      721 ggtgcaggag gtttgcgacc ataccatcca cagttcttaa tcgaagttca gaaactatgt
      781 aaccaatacg acgttttatt catcatggac gagattgcta caggatttgg tagaacaggt
      841 gagattttcg cattcaagca ctgtcaaaaa taccaggacc aacatggcat cagtccttcc
      901 gatcagatca aagttgttcc tgacatattg tgcgttggga agggcttaac cagtggatat
      961 atgactatga gtgcagtggt agtcaacgac aaagttgctt ccagaatctc ttctccaaat
     1021 agccctactg gtggctgctt catgcatggc cccaccttca tgggcaatgc cctggcatgc
     1081 agtgtggcag aaaagtctat ggatatacta ctgcgtggcg agtggagaaa acaagtgtct
     1141 gcaattgaaa accaaattta tagagaacta taccagtaca tcaagaaccc agataatggg
     1201 ctcattggaa ctgttgttaa gcgtgtgtca gttattggag ctgtaggtat cgtagagcta
     1261 tacaagaaga cagatcccga gtggttccag aaaaagttta tatccaaggg agtacatatc
     1321 cgacctttca actgcctgtg ttacattatg ccaccatatg tgatcacgac agaggaattg
     1381 acgaaggtta atcaagtctt gattgaagta ttacatgagt ggaaatccca cataaaccaa
     1441 tga
//
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