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GenBank: DRQN00000000.1
LOCUS DRQN01000000 240 rc DNA linear ENV 16-MAR-2020 DEFINITION MAG TPA_asm: Gammaproteobacteria bacterium isolate HyVt-583, whole genome shotgun sequencing project. ACCESSION DRQN00000000 VERSION DRQN00000000.1 DBLINK BioProject: PRJNA480137 BioSample: SAMN09638798 KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA; TPA:assembly. SOURCE Gammaproteobacteria bacterium (hydrothermal vent metagenome) ORGANISM Gammaproteobacteria bacterium Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria. REFERENCE 1 (bases 1 to 240) AUTHORS Zhou,Z., Liu,Y., Xu,W., Pan,J., Luo,Z.H. and Li,M. TITLE Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment JOURNAL mSystems 5 (1), e00795-19 (2020) PUBMED 31911466 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 240) AUTHORS Zhou,Z. TITLE Direct Submission JOURNAL Submitted (21-SEP-2018) School of Biological Sciences, The University of Hong Kong, Kadoorie Biological Sciences Building, Hong Kong, Hong Kong COMMENT The Gammaproteobacteria bacterium whole genome shotgun (WGS) project has the project accession DRQN00000000. This version of the project (01) has the accession number DRQN01000000, and consists of sequences DRQN01000001-DRQN01000240. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: MEGAHIT v. 1.1.2 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 116.46x Sequencing Technology :: Illumina HiSeq 2500 ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 02/26/2019 07:05:37 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 2,145 CDSs (total) :: 2,108 Genes (coding) :: 2,083 CDSs (with protein) :: 2,083 Genes (RNA) :: 37 rRNAs :: 1 (5S) partial rRNAs :: 1 (5S) tRNAs :: 35 ncRNAs :: 1 Pseudo Genes (total) :: 25 CDSs (without protein) :: 25 Pseudo Genes (ambiguous residues) :: 0 of 25 Pseudo Genes (frameshifted) :: 8 of 25 Pseudo Genes (incomplete) :: 15 of 25 Pseudo Genes (internal stop) :: 5 of 25 Pseudo Genes (multiple problems) :: 2 of 25 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..240 /organism="Gammaproteobacteria bacterium" /mol_type="genomic DNA" /isolate="HyVt-583" /isolation_source="rock sample from hydrothermal vent" /db_xref="taxon:1913989" /environmental_sample /geo_loc_name="Tonga: Lau Basin" /lat_lon="21.9892 S 176.5677 W" /collection_date="2005-05-21" /metagenome_source="hydrothermal vent metagenome" /note="Metagenome-assembled genome binned from sequencing reads available in SRR4453772; metagenomic" WGS DRQN01000001-DRQN01000240 //
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