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MAG TPA_asm: Gammaproteobacteria bacterium isolate HyVt-583, whole genome shotgun sequencing project

GenBank: DRQN00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       DRQN01000000             240 rc    DNA     linear   ENV 16-MAR-2020
DEFINITION  MAG TPA_asm: Gammaproteobacteria bacterium isolate HyVt-583, whole
            genome shotgun sequencing project.
ACCESSION   DRQN00000000
VERSION     DRQN00000000.1
DBLINK      BioProject: PRJNA480137
            BioSample: SAMN09638798
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Gammaproteobacteria bacterium (hydrothermal vent metagenome)
  ORGANISM  Gammaproteobacteria bacterium
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria.
REFERENCE   1  (bases 1 to 240)
  AUTHORS   Zhou,Z., Liu,Y., Xu,W., Pan,J., Luo,Z.H. and Li,M.
  TITLE     Genome- and Community-Level Interaction Insights into Carbon
            Utilization and Element Cycling Functions of Hydrothermarchaeota in
            Hydrothermal Sediment
  JOURNAL   mSystems 5 (1), e00795-19 (2020)
   PUBMED   31911466
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 240)
  AUTHORS   Zhou,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2018) School of Biological Sciences, The
            University of Hong Kong, Kadoorie Biological Sciences Building,
            Hong Kong, Hong Kong
COMMENT     The Gammaproteobacteria bacterium whole genome shotgun (WGS)
            project has the project accession DRQN00000000.  This version of
            the project (01) has the accession number DRQN01000000, and
            consists of sequences DRQN01000001-DRQN01000240.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: MEGAHIT v. 1.1.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 116.46x
            Sequencing Technology  :: Illumina HiSeq 2500
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 02/26/2019 07:05:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,145
            CDSs (total)                      :: 2,108
            Genes (coding)                    :: 2,083
            CDSs (with protein)               :: 2,083
            Genes (RNA)                       :: 37
            rRNAs                             :: 1 (5S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 35
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 25
            CDSs (without protein)            :: 25
            Pseudo Genes (ambiguous residues) :: 0 of 25
            Pseudo Genes (frameshifted)       :: 8 of 25
            Pseudo Genes (incomplete)         :: 15 of 25
            Pseudo Genes (internal stop)      :: 5 of 25
            Pseudo Genes (multiple problems)  :: 2 of 25
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Gammaproteobacteria bacterium"
                     /mol_type="genomic DNA"
                     /isolate="HyVt-583"
                     /isolation_source="rock sample from hydrothermal vent"
                     /db_xref="taxon:1913989"
                     /environmental_sample
                     /geo_loc_name="Tonga: Lau Basin"
                     /lat_lon="21.9892 S 176.5677 W"
                     /collection_date="2005-05-21"
                     /metagenome_source="hydrothermal vent metagenome"
                     /note="Metagenome-assembled genome binned from sequencing
                     reads available in SRR4453772;
                     metagenomic"
WGS         DRQN01000001-DRQN01000240
//
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