U.S. flag

An official website of the United States government

Agrobacterium tumefaciens strain 1D1609, whole genome shotgun sequencing project

GenBank: JAANRZ000000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       JAANRZ010000000          106 rc    DNA     linear   BCT 10-JUN-2020
DEFINITION  Agrobacterium tumefaciens strain 1D1609, whole genome shotgun
            sequencing project.
ACCESSION   JAANRZ000000000
VERSION     JAANRZ000000000.1
DBLINK      BioProject: PRJNA607555
            BioSample: SAMN14165501
KEYWORDS    WGS.
SOURCE      Agrobacterium tumefaciens (Rhizobium radiobacter)
  ORGANISM  Agrobacterium tumefaciens
            Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
            Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
            Agrobacterium; Agrobacterium tumefaciens complex.
REFERENCE   1  (bases 1 to 106)
  AUTHORS   Weisberg,A.J., Davis,E.W. 2nd, Tabima,J., Belcher,M.S., Miller,M.,
            Kuo,C.H., Loper,J.E., Grunwald,N.J., Putnam,M.L. and Chang,J.H.
  TITLE     Unexpected conservation and global transmission of agrobacterial
            virulence plasmids
  JOURNAL   Science 368 (6495) (2020)
   PUBMED   32499412
REFERENCE   2  (bases 1 to 106)
  AUTHORS   Weisberg,A.J., Davis,E.W. II, Tabima,J.R., Belcher,M.S., Miller,M.,
            Kuo,C.-H., Loper,J.E., Grunwald,N.J., Putnam,M.L. and Chang,J.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-FEB-2020) Botany and Plant Pathology, Oregon State
            University, 2082 Cordley Hall, Oregon State University, Corvallis,
            OR 97330, USA
COMMENT     The Agrobacterium tumefaciens whole genome shotgun (WGS) project
            has the project accession JAANRZ000000000.  This version of the
            project (01) has the accession number JAANRZ010000000, and consists
            of sequences JAANRZ010000001-JAANRZ010000106.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.13.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 304x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/09/2020 23:56:37
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.11
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,672
            CDSs (total)                      :: 5,615
            Genes (coding)                    :: 5,465
            CDSs (with protein)               :: 5,465
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 59 of 150
            Pseudo Genes (incomplete)         :: 107 of 150
            Pseudo Genes (internal stop)      :: 18 of 150
            Pseudo Genes (multiple problems)  :: 31 of 150
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..106
                     /organism="Agrobacterium tumefaciens"
                     /mol_type="genomic DNA"
                     /strain="1D1609"
                     /host="Alfalfa"
                     /db_xref="taxon:358"
WGS         JAANRZ010000001-JAANRZ010000106
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.