LOCUS JAANRZ010000000 106 rc DNA linear BCT 10-JUN-2020
DEFINITION Agrobacterium tumefaciens strain 1D1609, whole genome shotgun
sequencing project.
ACCESSION JAANRZ000000000
VERSION JAANRZ000000000.1
DBLINK BioProject: PRJNA607555
BioSample: SAMN14165501
KEYWORDS WGS.
SOURCE Agrobacterium tumefaciens (Rhizobium radiobacter)
ORGANISM Agrobacterium tumefaciens
Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria;
Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group;
Agrobacterium; Agrobacterium tumefaciens complex.
REFERENCE 1 (bases 1 to 106)
AUTHORS Weisberg,A.J., Davis,E.W. 2nd, Tabima,J., Belcher,M.S., Miller,M.,
Kuo,C.H., Loper,J.E., Grunwald,N.J., Putnam,M.L. and Chang,J.H.
TITLE Unexpected conservation and global transmission of agrobacterial
virulence plasmids
JOURNAL Science 368 (6495) (2020)
PUBMED 32499412
REFERENCE 2 (bases 1 to 106)
AUTHORS Weisberg,A.J., Davis,E.W. II, Tabima,J.R., Belcher,M.S., Miller,M.,
Kuo,C.-H., Loper,J.E., Grunwald,N.J., Putnam,M.L. and Chang,J.H.
TITLE Direct Submission
JOURNAL Submitted (29-FEB-2020) Botany and Plant Pathology, Oregon State
University, 2082 Cordley Hall, Oregon State University, Corvallis,
OR 97330, USA
COMMENT The Agrobacterium tumefaciens whole genome shotgun (WGS) project
has the project accession JAANRZ000000000. This version of the
project (01) has the accession number JAANRZ010000000, and consists
of sequences JAANRZ010000001-JAANRZ010000106.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.13.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 304x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/09/2020 23:56:37
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.11
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,672
CDSs (total) :: 5,615
Genes (coding) :: 5,465
CDSs (with protein) :: 5,465
Genes (RNA) :: 57
rRNAs :: 1, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 1, 1, 1 (5S, 16S, 23S)
tRNAs :: 50
ncRNAs :: 4
Pseudo Genes (total) :: 150
CDSs (without protein) :: 150
Pseudo Genes (ambiguous residues) :: 0 of 150
Pseudo Genes (frameshifted) :: 59 of 150
Pseudo Genes (incomplete) :: 107 of 150
Pseudo Genes (internal stop) :: 18 of 150
Pseudo Genes (multiple problems) :: 31 of 150
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..106
/organism="Agrobacterium tumefaciens"
/mol_type="genomic DNA"
/strain="1D1609"
/host="Alfalfa"
/db_xref="taxon:358"
WGS JAANRZ010000001-JAANRZ010000106
//