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Enterobacter hormaechei subsp. xiangfangensis strain HD2543, whole genome shotgun sequencing project

GenBank: JAMFXE000000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       JAMFXE010000000           32 rc    DNA     linear   BCT 09-NOV-2022
DEFINITION  Enterobacter hormaechei subsp. xiangfangensis strain HD2543, whole
            genome shotgun sequencing project.
ACCESSION   JAMFXE000000000
VERSION     JAMFXE000000000.1
DBLINK      BioProject: PRJNA824645
            BioSample: SAMN27409699
KEYWORDS    WGS.
SOURCE      Enterobacter hormaechei subsp. xiangfangensis (Enterobacter
            xiangfangensis)
  ORGANISM  Enterobacter hormaechei subsp. xiangfangensis
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 32)
  AUTHORS   Du,H. and Zhu,Z.
  TITLE     Whole genome sequences of carbapenem-resistant Enterobacter strains
            from China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 32)
  AUTHORS   Du,H. and Zhu,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-APR-2022) Department of Clinical Laboratory, The
            Second Affiliated Hospital of Soochow University, Xihuan, Suzhou
            215004, China
COMMENT     The Enterobacter hormaechei subsp. xiangfangensis whole genome
            shotgun (WGS) project has the project accession JAMFXE000000000.
            This version of the project (01) has the accession number
            JAMFXE010000000, and consists of sequences
            JAMFXE010000001-JAMFXE010000032.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 100x
            Sequencing Technology  :: Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/16/2022 23:20:56
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 4,796
            CDSs (total)                      :: 4,713
            Genes (coding)                    :: 4,671
            CDSs (with protein)               :: 4,671
            Genes (RNA)                       :: 83
            rRNAs                             :: 1, 3, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (5S, 16S)
            partial rRNAs                     :: 2, 5 (16S, 23S)
            tRNAs                             :: 69
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 16 of 42
            Pseudo Genes (incomplete)         :: 23 of 42
            Pseudo Genes (internal stop)      :: 9 of 42
            Pseudo Genes (multiple problems)  :: 6 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32
                     /organism="Enterobacter hormaechei subsp. xiangfangensis"
                     /mol_type="genomic DNA"
                     /strain="HD2543"
                     /isolation_source="Urinary tract"
                     /host="Homo sapiens"
                     /sub_species="xiangfangensis"
                     /db_xref="taxon:1296536"
                     /geo_loc_name="China: Sichuan, Chengdu"
                     /lat_lon="30.67 N 104.05 E"
                     /collection_date="2017-07-11"
                     /collected_by="Sichuan Provincial People's Hospital"
WGS         JAMFXE010000001-JAMFXE010000032
//
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