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Klebsiella grimontii strain TUM13777, whole genome shotgun sequencing project

GenBank: JAUCKX000000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       JAUCKX010000000          474 rc    DNA     linear   BCT 27-JUN-2023
DEFINITION  Klebsiella grimontii strain TUM13777, whole genome shotgun
            sequencing project.
ACCESSION   JAUCKX000000000
VERSION     JAUCKX000000000.1
DBLINK      BioProject: PRJNA980932
            BioSample: SAMN35654470
KEYWORDS    WGS.
SOURCE      Klebsiella grimontii
  ORGANISM  Klebsiella grimontii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
            Klebsiella.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Ikegaya,K., Komori,K., Aoki,K., Ishii,Y. and Tateda,K.
  TITLE     Analysis of the stepwise acquisition of blaCTX-M-2 and subsequent
            acquisition of either blaIMP-1 or blaIMP-6 in highly conserved
            IncN-pST5 plasmids
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Ikegaya,K., Komori,K., Aoki,K., Ishii,Y. and Tateda,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUN-2023) Department of Microbiology and Infectious
            Diseases, Toho University, 5-21-16, Omori-Nishi, Ota-Ku, Tokyo
            143-8540, Japan
COMMENT     The Klebsiella grimontii whole genome shotgun (WGS) project has the
            project accession JAUCKX000000000.  This version of the project
            (01) has the accession number JAUCKX010000000, and consists of
            sequences JAUCKX010000001-JAUCKX010000474.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-DEC-2017
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 17.93754x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 06/22/2023 17:44:54
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,502
            CDSs (total)                      :: 5,395
            Genes (coding)                    :: 5,313
            CDSs (with protein)               :: 5,313
            Genes (RNA)                       :: 107
            rRNAs                             :: 6, 5, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 16S)
            partial rRNAs                     :: 4, 10 (16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 31 of 82
            Pseudo Genes (incomplete)         :: 48 of 82
            Pseudo Genes (internal stop)      :: 24 of 82
            Pseudo Genes (multiple problems)  :: 16 of 82
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Klebsiella grimontii"
                     /mol_type="genomic DNA"
                     /strain="TUM13777"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:2058152"
                     /geo_loc_name="Japan"
                     /collection_date="2013"
                     /collected_by="Toho University School of Medicine"
WGS         JAUCKX010000001-JAUCKX010000474
//
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