LOCUS JAUCKX010000000 474 rc DNA linear BCT 27-JUN-2023
DEFINITION Klebsiella grimontii strain TUM13777, whole genome shotgun
sequencing project.
ACCESSION JAUCKX000000000
VERSION JAUCKX000000000.1
DBLINK BioProject: PRJNA980932
BioSample: SAMN35654470
KEYWORDS WGS.
SOURCE Klebsiella grimontii
ORGANISM Klebsiella grimontii
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group;
Klebsiella.
REFERENCE 1 (bases 1 to 474)
AUTHORS Ikegaya,K., Komori,K., Aoki,K., Ishii,Y. and Tateda,K.
TITLE Analysis of the stepwise acquisition of blaCTX-M-2 and subsequent
acquisition of either blaIMP-1 or blaIMP-6 in highly conserved
IncN-pST5 plasmids
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 474)
AUTHORS Ikegaya,K., Komori,K., Aoki,K., Ishii,Y. and Tateda,K.
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2023) Department of Microbiology and Infectious
Diseases, Toho University, 5-21-16, Omori-Nishi, Ota-Ku, Tokyo
143-8540, Japan
COMMENT The Klebsiella grimontii whole genome shotgun (WGS) project has the
project accession JAUCKX000000000. This version of the project
(01) has the accession number JAUCKX010000000, and consists of
sequences JAUCKX010000001-JAUCKX010000474.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 01-DEC-2017
Assembly Method :: SPAdes v. 3.9.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 17.93754x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 06/22/2023 17:44:54
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.5
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 5,502
CDSs (total) :: 5,395
Genes (coding) :: 5,313
CDSs (with protein) :: 5,313
Genes (RNA) :: 107
rRNAs :: 6, 5, 10 (5S, 16S, 23S)
complete rRNAs :: 6, 1 (5S, 16S)
partial rRNAs :: 4, 10 (16S, 23S)
tRNAs :: 79
ncRNAs :: 7
Pseudo Genes (total) :: 82
CDSs (without protein) :: 82
Pseudo Genes (ambiguous residues) :: 0 of 82
Pseudo Genes (frameshifted) :: 31 of 82
Pseudo Genes (incomplete) :: 48 of 82
Pseudo Genes (internal stop) :: 24 of 82
Pseudo Genes (multiple problems) :: 16 of 82
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..474
/organism="Klebsiella grimontii"
/mol_type="genomic DNA"
/strain="TUM13777"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:2058152"
/geo_loc_name="Japan"
/collection_date="2013"
/collected_by="Toho University School of Medicine"
WGS JAUCKX010000001-JAUCKX010000474
//