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Enterobacter roggenkampii strain CIDEIMsCOL1 contig39, whole genome shotgun sequence

GenBank: JZKL01000039.1

FASTA Graphics 

LOCUS       JZKL01000039             813 bp    DNA     linear   BCT 26-JUL-2019
DEFINITION  Enterobacter roggenkampii strain CIDEIMsCOL1 contig39, whole genome
            shotgun sequence.
ACCESSION   JZKL01000039 JZKL01000000
VERSION     JZKL01000039.1
DBLINK      BioProject: PRJNA271006
            BioSample: SAMN03277188
KEYWORDS    WGS.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter
            cloacae complex.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Adams,M., Sutton,G., Nelson,K., Bonomo,R., McCorrison,J., Sanka,R.,
            Brinkac,L. and Nierman,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-FEB-2015) JCVI, 4120 Capricorn Lane, La Jolla, CA
            92037, USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            The organism was changed from 'Enterobacter cloacae' to
            'Enterobacter cloacae complex' in July 2016.
            The organism was changed from 'Enterobacter cloacae complex' to
            'Enterobacter cloacae complex sp. CIDEIMsCOL1' in July 2016.
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.1.0
            Expected Final Version :: Yes
            Genome Coverage        :: 181.92x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI
            Annotation Date              :: 03/10/2015 13:40:46
            Annotation Pipeline          :: NCBI Prokaryotic Genome Annotation
                                            Pipeline
            Annotation Method            :: Best-placed reference protein set;
                                            GeneMarkS+
            Annotation Software revision :: 2.10 (rev. 461190)
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA;
                                            repeat_region
            Genes                        :: 4,737
            CDS                          :: 4,615
            Pseudo Genes                 :: 45
            CRISPR Arrays                :: 1
            rRNAs                        :: 6 (5S, 16S, 23S)
            tRNAs                        :: 67
            ncRNA                        :: 4
            Frameshifted Genes           :: 8
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="contig39"
                     /strain="CIDEIMsCOL1"
                     /isolation_source="Bodily fluid"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /geo_loc_name="Colombia"
                     /collection_date="2009"
                     /collected_by="CIDEIM"
                     /note="genotype: carbapenem resistant"
     gene            complement(<1..>813)
                     /locus_tag="RZ87_17620"
     CDS             complement(<1..>813)
                     /locus_tag="RZ87_17620"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_003089110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="KJW96790.1"
                     /translation="YVFCTLDALRTALRRHDVFVSPSWRYADPRLGLLDGAEWLAARP
                     IICRSLGLTIDAKTTLDALSVELDATWLAVAARLPDNPAIQLSENTEGKTELSLGALD
                     KLDEPCSLLQLRAAVSDLMPRVDLPEILLEIAARTGFSEAFTHVSERNARADNLVTSL
                     CAVLLGGACNTGLEPLIRTDNPALRRDRLSWVSQNYIRDDTLSAANAILVGAQSQLEL
                     AQVWGGGEVASADGMRFVVPVRTVHAGPNPKYFGTGRGVTWYNLISDQFSGLN"
ORIGIN      
        1 gttgaggccg gagaattggt cggaaatcag gttgtaccag gtgacacccc ggccggtgcc
       61 gaaatacttc ggattggggc cggcatgcac ggtgcgcacc ggtacgacga agcgcatgcc
      121 atcggcggag gcgacctcgc cgccacccca gacttgggcc agttccagtt ggctttgcgc
      181 tccgaccagg atggcgttag ccgctgacag ggtgtcgtcg cggatataat tctggctgac
      241 ccaggacagc cggtcacggc gcagcgccgg gttgtcggtg cggatcaagg gctccaggcc
      301 ggtgttgcag gccccgccca acagcaccgc gcagaggctg gtgaccaggt tgtcggcgcg
      361 tgcattgcgt tcggagacat gggtgaaggc ctcggaaaag ccagtgcggg cggcgatttc
      421 caagaggatt tccggcagat cgacacgcgg catcaggtca gacacggccg cccgcagttg
      481 cagcaacgag cagggctcgt ccagcttgtc cagcgccccg agcgacagtt cggtcttgcc
      541 ctcggtgttc tcgctcagtt gaatcgccgg gttgtcgggc aggcgcgcgg ctactgccag
      601 ccaggttgca tccagctcga cggacaaggc gtccagggtg gttttggcgt cgatggtcag
      661 gcccagtgac cggcagatga tcggtcgcgc cgccagccat tcggcaccgt cgagcaggcc
      721 aagacgcggg tcggcatagc gccaactggg cgagacgaag acatcgtggc ggcgcagggc
      781 cgtgcgcagc gcatcgagcg tgcagaacac ata
//
complement(<1..>813)
/locus_tag="RZ87_17620"
/inference="EXISTENCE: similar to AA
sequence:RefSeq:WP_003089110.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="transposase"
/protein_id="KJW96790.1"
/translation="YVFCTLDALRTALRRHDVFVSPSWRYADPRLGLLDGAEWLAARP
IICRSLGLTIDAKTTLDALSVELDATWLAVAARLPDNPAIQLSENTEGKTELSLGALD
KLDEPCSLLQLRAAVSDLMPRVDLPEILLEIAARTGFSEAFTHVSERNARADNLVTSL
CAVLLGGACNTGLEPLIRTDNPALRRDRLSWVSQNYIRDDTLSAANAILVGAQSQLEL
AQVWGGGEVASADGMRFVVPVRTVHAGPNPKYFGTGRGVTWYNLISDQFSGLN"
Feature JZKL01000039 : 1 segment (minus strand)
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