LOCUS MNJI01000000 287 rc DNA linear ENV 23-DEC-2016
DEFINITION MAG: Gemmatimonas sp. 13_1_20CM_3_60_15, whole genome shotgun
sequencing project.
ACCESSION MNJI00000000
VERSION MNJI00000000.1
DBLINK BioProject: PRJNA297196
BioSample: SAMN04327727
KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE Gemmatimonas sp. 13_1_20CM_3_60_15 (soil metagenome)
ORGANISM Gemmatimonas sp. 13_1_20CM_3_60_15
Bacteria; Pseudomonadati; Gemmatimonadota; Gemmatimonadia;
Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.
REFERENCE 1 (bases 1 to 287)
AUTHORS Butterfield,C.N., Li,Z., Andeer,P.F., Spaulding,S., Thomas,B.C.,
Singh,A., Hettich,R.L., Suttle,K.B., Probst,A.J., Tringe,S.G.,
Northen,T., Pan,C. and Banfield,J.F.
TITLE Proteogenomic analyses indicate bacterial methylotrophy and
archaeal heterotrophy are prevalent below the grass root zone
JOURNAL PeerJ 4, E2687 (2016)
PUBMED 27843720
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 287)
AUTHORS Butterfield,C.N., Li,Z., Andeer,P., Spaulding,S., Thomas,B.C.,
Singh,A., Suttle,B., Probst,A.J., Hettich,R., Tringe,S.G.,
Northen,T., Pan,C. and Banfield,J.F.
TITLE Direct Submission
JOURNAL Submitted (27-SEP-2016) Earth and Planetary Sciences, UC Berkeley,
305 McCone Hall, Berkeley, CA 94720, USA
COMMENT The Gemmatimonas sp. 13_1_20CM_3_60_15 whole genome shotgun (WGS)
project has the project accession MNJI00000000. This version of
the project (01) has the accession number MNJI01000000, and
consists of sequences MNJI01000001-MNJI01000287.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: IDBA_UD v. 06.01.2014s
Genome Coverage :: 10x
Sequencing Technology :: Illumina HiSeq2000
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 10/25/2016 22:02:07
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 3.3
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 924
CDS (total) :: 916
Genes (coding) :: 621
CDS (coding) :: 621
Genes (RNA) :: 8
rRNAs :: 1 (16S)
partial rRNAs :: 1 (16S)
tRNAs :: 5
ncRNAs :: 2
Pseudo Genes (total) :: 295
Pseudo Genes (ambiguous residues) :: 1 of 295
Pseudo Genes (frameshifted) :: 3 of 295
Pseudo Genes (incomplete) :: 291 of 295
Pseudo Genes (internal stop) :: 0 of 295
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..287
/organism="Gemmatimonas sp. 13_1_20CM_3_60_15"
/mol_type="genomic DNA"
/isolation_source="Soil sample from Angelo meadow plot 1,
20cm depth, 6 days after first rain event (27mm)"
/db_xref="taxon:1805208"
/environmental_sample
/geo_loc_name="USA: Angelo, CA"
/lat_lon="39.74 N 123.63 W"
/collection_date="27-Sep-2013"
/metagenome_source="soil metagenome"
/note="metagenomic"
WGS MNJI01000001-MNJI01000287
//