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MAG: Gemmatimonas sp. 13_1_20CM_3_60_15, whole genome shotgun sequencing project

GenBank: MNJI00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       MNJI01000000             287 rc    DNA     linear   ENV 23-DEC-2016
DEFINITION  MAG: Gemmatimonas sp. 13_1_20CM_3_60_15, whole genome shotgun
            sequencing project.
ACCESSION   MNJI00000000
VERSION     MNJI00000000.1
DBLINK      BioProject: PRJNA297196
            BioSample: SAMN04327727
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE      Gemmatimonas sp. 13_1_20CM_3_60_15 (soil metagenome)
  ORGANISM  Gemmatimonas sp. 13_1_20CM_3_60_15
            Bacteria; Pseudomonadati; Gemmatimonadota; Gemmatimonadia;
            Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.
REFERENCE   1  (bases 1 to 287)
  AUTHORS   Butterfield,C.N., Li,Z., Andeer,P.F., Spaulding,S., Thomas,B.C.,
            Singh,A., Hettich,R.L., Suttle,K.B., Probst,A.J., Tringe,S.G.,
            Northen,T., Pan,C. and Banfield,J.F.
  TITLE     Proteogenomic analyses indicate bacterial methylotrophy and
            archaeal heterotrophy are prevalent below the grass root zone
  JOURNAL   PeerJ 4, E2687 (2016)
   PUBMED   27843720
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 287)
  AUTHORS   Butterfield,C.N., Li,Z., Andeer,P., Spaulding,S., Thomas,B.C.,
            Singh,A., Suttle,B., Probst,A.J., Hettich,R., Tringe,S.G.,
            Northen,T., Pan,C. and Banfield,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-SEP-2016) Earth and Planetary Sciences, UC Berkeley,
            305 McCone Hall, Berkeley, CA 94720, USA
COMMENT     The Gemmatimonas sp. 13_1_20CM_3_60_15 whole genome shotgun (WGS)
            project has the project accession MNJI00000000.  This version of
            the project (01) has the accession number MNJI01000000, and
            consists of sequences MNJI01000001-MNJI01000287.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: IDBA_UD v. 06.01.2014s
            Genome Coverage       :: 10x
            Sequencing Technology :: Illumina HiSeq2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/25/2016 22:02:07
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.3
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 924
            CDS (total)                       :: 916
            Genes (coding)                    :: 621
            CDS (coding)                      :: 621
            Genes (RNA)                       :: 8
            rRNAs                             :: 1 (16S)
            partial rRNAs                     :: 1 (16S)
            tRNAs                             :: 5
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 295
            Pseudo Genes (ambiguous residues) :: 1 of 295
            Pseudo Genes (frameshifted)       :: 3 of 295
            Pseudo Genes (incomplete)         :: 291 of 295
            Pseudo Genes (internal stop)      :: 0 of 295
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..287
                     /organism="Gemmatimonas sp. 13_1_20CM_3_60_15"
                     /mol_type="genomic DNA"
                     /isolation_source="Soil sample from Angelo meadow plot 1,
                     20cm depth, 6 days after first rain event (27mm)"
                     /db_xref="taxon:1805208"
                     /environmental_sample
                     /geo_loc_name="USA: Angelo, CA"
                     /lat_lon="39.74 N 123.63 W"
                     /collection_date="27-Sep-2013"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
WGS         MNJI01000001-MNJI01000287
//
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