LOCUS NENX01000000 186 rc DNA linear BCT 12-MAY-2017
DEFINITION Escherichia coli strain OLC1255, whole genome shotgun sequencing
project.
ACCESSION NENX00000000
VERSION NENX00000000.1
DBLINK BioProject: PRJNA309770
BioSample: SAMN04420173
KEYWORDS WGS.
SOURCE Escherichia coli
ORGANISM Escherichia coli
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 186)
AUTHORS Carrillo,C.D., Koziol,A.G., Mathews,A., Goji,N., Lambert,D.,
Huszczynski,G., Deschenes,M., Gauthier,M., Amoako,K. and Blais,B.
TITLE Application of genomics in the determination of verotoxigenic
Escherichia coli toxin subtypes
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 186)
AUTHORS Carrillo,C.D., Koziol,A.G., Mathews,A., Goji,N., Lambert,D.,
Huszczynski,G., Deschenes,M., Gauthier,M., Amoako,K. and Blais,B.
TITLE Direct Submission
JOURNAL Submitted (13-MAR-2017) Research and Development, Science Branch,
Canadian Food Inspection Agency, 960 Carling Ave, Building 22,
Ottawa, ON K1A 0C6, Canada
COMMENT The Escherichia coli whole genome shotgun (WGS) project has the
project accession NENX00000000. This version of the project (01)
has the accession number NENX01000000, and consists of sequences
NENX01000001-NENX01000186.
Source DNA available from Burton Blais, 960 Carling Ave., Bldg. 22,
Ottawa, Ontario, Canada, K1A 0C6.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.7.1
Genome Coverage :: 93.3114x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 04/26/2017 10:55:18
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.1
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,834
CDS (total) :: 5,728
Genes (coding) :: 5,454
CDS (coding) :: 5,454
Genes (RNA) :: 106
rRNAs :: 7, 3, 3 (5S, 16S, 23S)
complete rRNAs :: 6, 1 (5S, 16S)
partial rRNAs :: 1, 2, 3 (5S, 16S, 23S)
tRNAs :: 85
ncRNAs :: 8
Pseudo Genes (total) :: 274
Pseudo Genes (ambiguous residues) :: 0 of 274
Pseudo Genes (frameshifted) :: 134 of 274
Pseudo Genes (incomplete) :: 105 of 274
Pseudo Genes (internal stop) :: 78 of 274
Pseudo Genes (multiple problems) :: 42 of 274
CRISPR Arrays :: 2
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..186
/organism="Escherichia coli"
/mol_type="genomic DNA"
/strain="OLC1255"
/serotype="O103:H2"
/db_xref="taxon:562"
/geo_loc_name="Canada"
/collection_date="29-Jan-2014"
/note="genotype: vtx1a"
WGS NENX01000001-NENX01000186
//