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Escherichia coli strain OLC1255, whole genome shotgun sequencing project

GenBank: NENX00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       NENX01000000             186 rc    DNA     linear   BCT 12-MAY-2017
DEFINITION  Escherichia coli strain OLC1255, whole genome shotgun sequencing
            project.
ACCESSION   NENX00000000
VERSION     NENX00000000.1
DBLINK      BioProject: PRJNA309770
            BioSample: SAMN04420173
KEYWORDS    WGS.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 186)
  AUTHORS   Carrillo,C.D., Koziol,A.G., Mathews,A., Goji,N., Lambert,D.,
            Huszczynski,G., Deschenes,M., Gauthier,M., Amoako,K. and Blais,B.
  TITLE     Application of genomics in the determination of verotoxigenic
            Escherichia coli toxin subtypes
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 186)
  AUTHORS   Carrillo,C.D., Koziol,A.G., Mathews,A., Goji,N., Lambert,D.,
            Huszczynski,G., Deschenes,M., Gauthier,M., Amoako,K. and Blais,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2017) Research and Development, Science Branch,
            Canadian Food Inspection Agency, 960 Carling Ave, Building 22,
            Ottawa, ON K1A 0C6, Canada
COMMENT     The Escherichia coli whole genome shotgun (WGS) project has the
            project accession NENX00000000.  This version of the project (01)
            has the accession number NENX01000000, and consists of sequences
            NENX01000001-NENX01000186.
            Source DNA available from Burton Blais, 960 Carling Ave., Bldg. 22,
            Ottawa, Ontario, Canada, K1A 0C6.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.7.1
            Genome Coverage       :: 93.3114x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/26/2017 10:55:18
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,834
            CDS (total)                       :: 5,728
            Genes (coding)                    :: 5,454
            CDS (coding)                      :: 5,454
            Genes (RNA)                       :: 106
            rRNAs                             :: 7, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 1 (5S, 16S)
            partial rRNAs                     :: 1, 2, 3 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 274
            Pseudo Genes (ambiguous residues) :: 0 of 274
            Pseudo Genes (frameshifted)       :: 134 of 274
            Pseudo Genes (incomplete)         :: 105 of 274
            Pseudo Genes (internal stop)      :: 78 of 274
            Pseudo Genes (multiple problems)  :: 42 of 274
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..186
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="OLC1255"
                     /serotype="O103:H2"
                     /db_xref="taxon:562"
                     /geo_loc_name="Canada"
                     /collection_date="29-Jan-2014"
                     /note="genotype: vtx1a"
WGS         NENX01000001-NENX01000186
//
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