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NCBI Reference Sequence: NM_001306402.3
FASTA Graphics
LOCUS NM_001306402 3861 bp mRNA linear INV 04-DEC-2024 DEFINITION Caenorhabditis elegans Afadin (afd-1), partial mRNA. ACCESSION NM_001306402 VERSION NM_001306402.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3861) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3861) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-DEC-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3861) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (17-OCT-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3861) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003279). On Apr 15, 2020 this sequence version replaced NM_001306402.2. COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3861 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="I" gene <1..>3861 /gene="afd-1" /locus_tag="CELE_W03F11.6" /db_xref="GeneID:171776" /db_xref="WormBase:WBGene00021009" CDS 1..3861 /gene="afd-1" /locus_tag="CELE_W03F11.6" /standard_name="W03F11.6h" /note="Confirmed by transcript evidence" /codon_start=1 /product="Afadin" /protein_id="NP_001293331.1" /db_xref="GeneID:171776" /db_xref="WormBase:WBGene00021009" /translation="MSDLREIDGRPIPPTECPLFEMTARSGNGENGFDSFLAIKRKPH DYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEV GSDSQMSNFSQHNIYLDGPDIRGRHAAIAFMEGVVTLTPSTRDAYLEVNGHQLMQTEI LRDGDHIRIGADHSFKFSTSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTAR CAPSDYCSLPQQNDYYPPSMSGSSVSSSRQEDLMMHSNNNILPPYSTKSAQEPLQLPL SIQIGDYNVWDFLAEVMSNRAATSSEMSTFRLSPAYSLYLALRSFHTHNKPYSVQFFS RIESNFKQIAQECSSKDDLIFWLANASEFNHLVERDTELKASRYGKISVEIERIFRRL VAVLQSVIRPAARALLDIHLNDHDATGDVIHLLDTTMRQARICGLNAALTIQLCGHLL HMVNAFVFNSLVSVNLPAAQLNTRLGKCLQYRIESIHRFCERMGVEMAAECHLDRSRQ AANLLATQKNDVAALGSTCYKLNSLQVVHILSGFEPDDGEIPCDDDVVDRICRLAEKQ ADKLTLEDGQRVTLEESDELNLPFLIPQDGYFVEQFRTVPDGLWQYLQQLQHRRLCHT VSLTPAPPAAMTHSMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGD SFGSAVSDTISKVTLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRLET GDQLLSVNGHSLIGISQEDAARLMTQSGNEVHFDVRKRAAHRNGLSNWLGSQTPTTSN FIAPSPSTVPPPSYSHVGRTPSYDGQPPPSYNHRNGGASGAGGSSGRNSAFVAPLSNS SSNASSSHMQQHYAHHNMMHNGNLSAAPGAPAGDPKHYRSSSASDLQHDPNASFSQSS MTGSARSSVFDKLPSHYRHSTRPTVIQPTRPSAQSPSALRKAAAASPVSNLYRPTSAS NLFAPPRNSGGLVGYSSNAARESTQDIHRAEPAIVIRPVDLNMPKATPPASIRGAVPT AITQALQLQPNGGGAVLRQVRPASGLRERLQDADVRNLEKTNTALMSYEAVNEELDRL DAKQNTMTIDEQRRYRELLNVVAEQSRARKLLSEIRSPPTSYQEREIPIHVQKEQQQH RRETVIDDIPHSSSSVENVSPVSPPESRKVQFIDEVVQYQTPTSGANHAFFDDVPVLD SPGIVGTNEIYRDPRQRRLNELQDRNRSSENGAADGAKLGFRDKQRLFARQIGEDTAP RQRMNESSAQRLIETDIAATPQKP" ORIGIN 1 atgtcagacc tccgtgaaat cgacggacgg cccattccac caacagagtg cccgcttttc 61 gagatgactg ctcgaagtgg aaacggcgag aatggattcg attcgttttt ggcgatcaag 121 cggaaaccgc atgattatca agtcccctcc acctcagttg ttgctccatc atcagtcacc 181 ctaccaatgt ctccattaac atcacttcca ccacaaattc acaatcttcc agtgcttatt 241 gtgatgaata atgatggtca cttgtcaaca caccgaataa cgttacacga gggagtaaca 301 gaggttggaa gtgacagtca aatgtccaat ttctcacagc ataatattta tctcgatggt 361 ccggatattc gtggacgcca cgcggcaatc gctttcatgg aaggcgtcgt cacactaaca 421 ccatccactc gtgatgccta cctagaggtg aacggccatc aactgatgca gacggagatc 481 ctccgggacg gtgatcacat tcgcatcgga gccgatcatt cgttcaagtt tagcacgtcg 541 tcgtcacaag caaatcagat taacagtact aatatcagca actcgaacca acgacacttc 601 caacaacaga cattttatcc ggaaatggct gattcacgag cttcaactgc caggtgtgca 661 ccatcggatt actgtagtct accacaacag aacgattatt atccgccgag catgtccggc 721 tcatcagtct catcatcacg gcaggaggat cttatgatgc attccaataa taacatcctg 781 ccaccgtact ctacaaaatc cgcgcaggaa cccctccaac tgccgctctc aattcaaatc 841 ggcgactaca atgtatggga tttcctggcc gaagtgatgt cgaatcgtgc ggcaacctca 901 tcggaaatgt ccacattccg cctatcgcct gcctactctc tctacctggc acttcgatca 961 ttccacacac acaataaacc gtactctgtg caattcttct cacggatcga gtcgaatttc 1021 aagcaaatcg ctcaggaatg ctcgtcgaag gatgatctga tcttttggct tgccaacgca 1081 tcggaattca atcatcttgt cgagcgggac actgagctga aagcgtcgag atatggcaaa 1141 atatctgtgg aaattgagag aatattccgg cgattggttg cagtgcttca aagtgtcatc 1201 cgtccggcgg cgcgggctct gttggacatt catctgaatg atcacgacgc gaccggcgat 1261 gtgattcatc ttctcgacac cacgatgcgc caggcgagaa tttgtggtct caacgcggcg 1321 ctcacaattc aactgtgcgg gcatctcctc cacatggtca atgcctttgt gttcaacagc 1381 ttggtctcag tcaaccttcc agctgcccag ttgaatactc gcctcggaaa gtgtcttcag 1441 tatcggatag agtcgattca cagattctgc gaacgaatgg gcgtcgagat ggccgccgag 1501 tgccatttgg atagatcccg tcaggccgct aaccttctcg ccacgcagaa gaatgatgtt 1561 gccgcgttgg gatcgacgtg ctataagctg aacagcctcc aagtggttca tatcctgtcg 1621 ggattcgaac cagacgacgg cgagattcca tgtgacgatg acgtcgttga tcggatctgt 1681 agactcgctg aaaaacaggc ggataagctg acgttggagg atgggcagcg cgtgacactg 1741 gaggagtccg acgagctgaa ccttccgttc ctgatccctc aggatggtta ctttgtcgag 1801 cagttccgaa cggtgccaga tggtctttgg cagtacttgc agcaacttca gcataggcgc 1861 ctctgtcata cggtgtcgct tacaccggca ccgccggctg cgatgaccca ttcgatgcat 1921 gcgatgcata ttggagcaag cgatgctcat tatcatcagc atcagcatca gcagcagcag 1981 aacccgattg tgagaagtgt gtcgcagact acactgacca gtattccgac tacacaattt 2041 ggcgacagtt ttggaagtgc cgtgtcggat acgatatcga aggtgacact gcggaagaat 2101 ggaggaggca tcggattgag tattgtcgct gctcagggtg ttggtgatcg tcaaatggga 2161 atttatgtga agaaggttgt cgaaggaaca ccggctgcac acgatggacg actcgagact 2221 ggtgatcagt tattgagtgt taacggacat tcgttaattg gaatttcaca ggaagacgcc 2281 gcccgtctca tgacccaaag tggaaacgag gtgcatttcg acgtccggaa aagagccgct 2341 caccgtaacg ggctcagcaa ttggctcgga tcccaaacac cgacaacttc aaatttcatt 2401 gcaccatctc catctacagt acccccgccg agttattcac atgttggacg gactccgtct 2461 tatgatggac aaccaccacc gagttataat cacagaaatg gtggagccag cggagcagga 2521 ggatcatctg gaagaaatag tgctttcgta gcaccacttt cgaattcatc atcaaatgcg 2581 tcgagtagtc atatgcaaca acactatgct catcataata tgatgcataa tggcaatttg 2641 agtgctgctc cgggagctcc cgcgggggat ccgaaacatt atcgaagctc gtcggctagt 2701 gatttgcagc acgatccaaa cgcctcattc tctcaatcat caatgactgg aagtgcgaga 2761 agttcagtgt ttgacaagct tccatctcac taccgtcact cgacacggcc tacagtaatc 2821 cagccaacac gtccaagtgc tcaatctcca tcggctcttc gaaaagcggc cgccgcctcg 2881 ccggtcagca atctgtaccg tccgacgtcg gcgtcgaatc tgtttgcacc gcccagaaat 2941 tcgggcggtc tcgtcggata ttcgagtaac gcggcacggg agtcgacaca ggatattcat 3001 cgagcggagc cagccattgt tatcaggcct gtcgacctga atatgccgaa agcgacacca 3061 ccggcgtcga ttcgtggagc tgtgccgacg gcgattacac aggctcttca acttcaacca 3121 aacggcggtg gagcagtact tcgtcaggtt cggccagcat ccgggctccg cgagcgactt 3181 caggacgctg atgttcggaa tttggagaaa acgaacacag cactgatgag ctatgaagca 3241 gtgaatgagg agctcgatcg actcgacgct aagcagaata cgatgacaat tgacgagcaa 3301 cggagatatc gagagctact gaacgttgtc gccgagcaga gccgagcaag gaagctgctc 3361 tcggagatca gatcaccacc tacatcttat caagaacgtg aaattccgat tcatgtgcaa 3421 aaagagcagc agcagcaccg gcgggaaact gtgattgatg atattccaca ctcgagctca 3481 agtgttgaga atgtgtcacc tgtgagcccg ccggaaagtc gaaaagttca atttattgat 3541 gaagttgtgc agtatcagac gccgaccagc ggagccaatc acgctttctt tgatgatgtg 3601 ccggttttgg attcgcctgg gatcgtcggc accaacgaaa tctaccgtga tccccgccaa 3661 cgtcggctca acgagctcca agaccgcaat cgcagctcgg aaaatggagc ggcggacggc 3721 gcgaagctcg gcttccgcga caagcagcgc ctattcgcac ggcaaatcgg cgaggacacg 3781 gcaccacgcc aacgaatgaa tgagagcagt gctcagcggc tcattgagac ggacattgcc 3841 gccaccccgc aaaagccata a //
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