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Caenorhabditis elegans Afadin (afd-1), partial mRNA

NCBI Reference Sequence: NM_001306402.3

FASTA Graphics 

LOCUS       NM_001306402            3861 bp    mRNA    linear   INV 04-DEC-2024
DEFINITION  Caenorhabditis elegans Afadin (afd-1), partial mRNA.
ACCESSION   NM_001306402
VERSION     NM_001306402.3
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 3861)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 3861)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (04-DEC-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3861)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (17-OCT-2024) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 3861)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003279).
            
            On Apr 15, 2020 this sequence version replaced NM_001306402.2.
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3861
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="I"
     gene            <1..>3861
                     /gene="afd-1"
                     /locus_tag="CELE_W03F11.6"
                     /db_xref="GeneID:171776"
                     /db_xref="WormBase:WBGene00021009"
     CDS             1..3861
                     /gene="afd-1"
                     /locus_tag="CELE_W03F11.6"
                     /standard_name="W03F11.6h"
                     /note="Confirmed by transcript evidence"
                     /codon_start=1
                     /product="Afadin"
                     /protein_id="NP_001293331.1"
                     /db_xref="GeneID:171776"
                     /db_xref="WormBase:WBGene00021009"
                     /translation="MSDLREIDGRPIPPTECPLFEMTARSGNGENGFDSFLAIKRKPH
                     DYQVPSTSVVAPSSVTLPMSPLTSLPPQIHNLPVLIVMNNDGHLSTHRITLHEGVTEV
                     GSDSQMSNFSQHNIYLDGPDIRGRHAAIAFMEGVVTLTPSTRDAYLEVNGHQLMQTEI
                     LRDGDHIRIGADHSFKFSTSSSQANQINSTNISNSNQRHFQQQTFYPEMADSRASTAR
                     CAPSDYCSLPQQNDYYPPSMSGSSVSSSRQEDLMMHSNNNILPPYSTKSAQEPLQLPL
                     SIQIGDYNVWDFLAEVMSNRAATSSEMSTFRLSPAYSLYLALRSFHTHNKPYSVQFFS
                     RIESNFKQIAQECSSKDDLIFWLANASEFNHLVERDTELKASRYGKISVEIERIFRRL
                     VAVLQSVIRPAARALLDIHLNDHDATGDVIHLLDTTMRQARICGLNAALTIQLCGHLL
                     HMVNAFVFNSLVSVNLPAAQLNTRLGKCLQYRIESIHRFCERMGVEMAAECHLDRSRQ
                     AANLLATQKNDVAALGSTCYKLNSLQVVHILSGFEPDDGEIPCDDDVVDRICRLAEKQ
                     ADKLTLEDGQRVTLEESDELNLPFLIPQDGYFVEQFRTVPDGLWQYLQQLQHRRLCHT
                     VSLTPAPPAAMTHSMHAMHIGASDAHYHQHQHQQQQNPIVRSVSQTTLTSIPTTQFGD
                     SFGSAVSDTISKVTLRKNGGGIGLSIVAAQGVGDRQMGIYVKKVVEGTPAAHDGRLET
                     GDQLLSVNGHSLIGISQEDAARLMTQSGNEVHFDVRKRAAHRNGLSNWLGSQTPTTSN
                     FIAPSPSTVPPPSYSHVGRTPSYDGQPPPSYNHRNGGASGAGGSSGRNSAFVAPLSNS
                     SSNASSSHMQQHYAHHNMMHNGNLSAAPGAPAGDPKHYRSSSASDLQHDPNASFSQSS
                     MTGSARSSVFDKLPSHYRHSTRPTVIQPTRPSAQSPSALRKAAAASPVSNLYRPTSAS
                     NLFAPPRNSGGLVGYSSNAARESTQDIHRAEPAIVIRPVDLNMPKATPPASIRGAVPT
                     AITQALQLQPNGGGAVLRQVRPASGLRERLQDADVRNLEKTNTALMSYEAVNEELDRL
                     DAKQNTMTIDEQRRYRELLNVVAEQSRARKLLSEIRSPPTSYQEREIPIHVQKEQQQH
                     RRETVIDDIPHSSSSVENVSPVSPPESRKVQFIDEVVQYQTPTSGANHAFFDDVPVLD
                     SPGIVGTNEIYRDPRQRRLNELQDRNRSSENGAADGAKLGFRDKQRLFARQIGEDTAP
                     RQRMNESSAQRLIETDIAATPQKP"
ORIGIN      
        1 atgtcagacc tccgtgaaat cgacggacgg cccattccac caacagagtg cccgcttttc
       61 gagatgactg ctcgaagtgg aaacggcgag aatggattcg attcgttttt ggcgatcaag
      121 cggaaaccgc atgattatca agtcccctcc acctcagttg ttgctccatc atcagtcacc
      181 ctaccaatgt ctccattaac atcacttcca ccacaaattc acaatcttcc agtgcttatt
      241 gtgatgaata atgatggtca cttgtcaaca caccgaataa cgttacacga gggagtaaca
      301 gaggttggaa gtgacagtca aatgtccaat ttctcacagc ataatattta tctcgatggt
      361 ccggatattc gtggacgcca cgcggcaatc gctttcatgg aaggcgtcgt cacactaaca
      421 ccatccactc gtgatgccta cctagaggtg aacggccatc aactgatgca gacggagatc
      481 ctccgggacg gtgatcacat tcgcatcgga gccgatcatt cgttcaagtt tagcacgtcg
      541 tcgtcacaag caaatcagat taacagtact aatatcagca actcgaacca acgacacttc
      601 caacaacaga cattttatcc ggaaatggct gattcacgag cttcaactgc caggtgtgca
      661 ccatcggatt actgtagtct accacaacag aacgattatt atccgccgag catgtccggc
      721 tcatcagtct catcatcacg gcaggaggat cttatgatgc attccaataa taacatcctg
      781 ccaccgtact ctacaaaatc cgcgcaggaa cccctccaac tgccgctctc aattcaaatc
      841 ggcgactaca atgtatggga tttcctggcc gaagtgatgt cgaatcgtgc ggcaacctca
      901 tcggaaatgt ccacattccg cctatcgcct gcctactctc tctacctggc acttcgatca
      961 ttccacacac acaataaacc gtactctgtg caattcttct cacggatcga gtcgaatttc
     1021 aagcaaatcg ctcaggaatg ctcgtcgaag gatgatctga tcttttggct tgccaacgca
     1081 tcggaattca atcatcttgt cgagcgggac actgagctga aagcgtcgag atatggcaaa
     1141 atatctgtgg aaattgagag aatattccgg cgattggttg cagtgcttca aagtgtcatc
     1201 cgtccggcgg cgcgggctct gttggacatt catctgaatg atcacgacgc gaccggcgat
     1261 gtgattcatc ttctcgacac cacgatgcgc caggcgagaa tttgtggtct caacgcggcg
     1321 ctcacaattc aactgtgcgg gcatctcctc cacatggtca atgcctttgt gttcaacagc
     1381 ttggtctcag tcaaccttcc agctgcccag ttgaatactc gcctcggaaa gtgtcttcag
     1441 tatcggatag agtcgattca cagattctgc gaacgaatgg gcgtcgagat ggccgccgag
     1501 tgccatttgg atagatcccg tcaggccgct aaccttctcg ccacgcagaa gaatgatgtt
     1561 gccgcgttgg gatcgacgtg ctataagctg aacagcctcc aagtggttca tatcctgtcg
     1621 ggattcgaac cagacgacgg cgagattcca tgtgacgatg acgtcgttga tcggatctgt
     1681 agactcgctg aaaaacaggc ggataagctg acgttggagg atgggcagcg cgtgacactg
     1741 gaggagtccg acgagctgaa ccttccgttc ctgatccctc aggatggtta ctttgtcgag
     1801 cagttccgaa cggtgccaga tggtctttgg cagtacttgc agcaacttca gcataggcgc
     1861 ctctgtcata cggtgtcgct tacaccggca ccgccggctg cgatgaccca ttcgatgcat
     1921 gcgatgcata ttggagcaag cgatgctcat tatcatcagc atcagcatca gcagcagcag
     1981 aacccgattg tgagaagtgt gtcgcagact acactgacca gtattccgac tacacaattt
     2041 ggcgacagtt ttggaagtgc cgtgtcggat acgatatcga aggtgacact gcggaagaat
     2101 ggaggaggca tcggattgag tattgtcgct gctcagggtg ttggtgatcg tcaaatggga
     2161 atttatgtga agaaggttgt cgaaggaaca ccggctgcac acgatggacg actcgagact
     2221 ggtgatcagt tattgagtgt taacggacat tcgttaattg gaatttcaca ggaagacgcc
     2281 gcccgtctca tgacccaaag tggaaacgag gtgcatttcg acgtccggaa aagagccgct
     2341 caccgtaacg ggctcagcaa ttggctcgga tcccaaacac cgacaacttc aaatttcatt
     2401 gcaccatctc catctacagt acccccgccg agttattcac atgttggacg gactccgtct
     2461 tatgatggac aaccaccacc gagttataat cacagaaatg gtggagccag cggagcagga
     2521 ggatcatctg gaagaaatag tgctttcgta gcaccacttt cgaattcatc atcaaatgcg
     2581 tcgagtagtc atatgcaaca acactatgct catcataata tgatgcataa tggcaatttg
     2641 agtgctgctc cgggagctcc cgcgggggat ccgaaacatt atcgaagctc gtcggctagt
     2701 gatttgcagc acgatccaaa cgcctcattc tctcaatcat caatgactgg aagtgcgaga
     2761 agttcagtgt ttgacaagct tccatctcac taccgtcact cgacacggcc tacagtaatc
     2821 cagccaacac gtccaagtgc tcaatctcca tcggctcttc gaaaagcggc cgccgcctcg
     2881 ccggtcagca atctgtaccg tccgacgtcg gcgtcgaatc tgtttgcacc gcccagaaat
     2941 tcgggcggtc tcgtcggata ttcgagtaac gcggcacggg agtcgacaca ggatattcat
     3001 cgagcggagc cagccattgt tatcaggcct gtcgacctga atatgccgaa agcgacacca
     3061 ccggcgtcga ttcgtggagc tgtgccgacg gcgattacac aggctcttca acttcaacca
     3121 aacggcggtg gagcagtact tcgtcaggtt cggccagcat ccgggctccg cgagcgactt
     3181 caggacgctg atgttcggaa tttggagaaa acgaacacag cactgatgag ctatgaagca
     3241 gtgaatgagg agctcgatcg actcgacgct aagcagaata cgatgacaat tgacgagcaa
     3301 cggagatatc gagagctact gaacgttgtc gccgagcaga gccgagcaag gaagctgctc
     3361 tcggagatca gatcaccacc tacatcttat caagaacgtg aaattccgat tcatgtgcaa
     3421 aaagagcagc agcagcaccg gcgggaaact gtgattgatg atattccaca ctcgagctca
     3481 agtgttgaga atgtgtcacc tgtgagcccg ccggaaagtc gaaaagttca atttattgat
     3541 gaagttgtgc agtatcagac gccgaccagc ggagccaatc acgctttctt tgatgatgtg
     3601 ccggttttgg attcgcctgg gatcgtcggc accaacgaaa tctaccgtga tccccgccaa
     3661 cgtcggctca acgagctcca agaccgcaat cgcagctcgg aaaatggagc ggcggacggc
     3721 gcgaagctcg gcttccgcga caagcagcgc ctattcgcac ggcaaatcgg cgaggacacg
     3781 gcaccacgcc aacgaatgaa tgagagcagt gctcagcggc tcattgagac ggacattgcc
     3841 gccaccccgc aaaagccata a
//
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