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NCBI Reference Sequence: NM_033146.2
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LOCUS NM_033146 838 bp mRNA linear ROD 14-JUN-2024 DEFINITION Mus musculus ER membrane protein complex subunit 9 (Emc9), transcript variant 1, mRNA. ACCESSION NM_033146 VERSION NM_033146.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 838) AUTHORS Guna,A., Volkmar,N., Christianson,J.C. and Hegde,R.S. TITLE The ER membrane protein complex is a transmembrane domain insertase JOURNAL Science 359 (6374), 470-473 (2018) PUBMED 29242231 REFERENCE 2 (bases 1 to 838) AUTHORS Yawata,M., Murata,S., Tanaka,K., Ishigatsubo,Y. and Kasahara,M. TITLE Nucleotide sequence analysis of the approximately 35-kb segment containing interferon-gamma-inducible mouse proteasome activator genes JOURNAL Immunogenetics 53 (2), 119-129 (2001) PUBMED 11345588 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC174678.2. On Mar 23, 2023 this sequence version replaced NM_033146.1. ##Evidence-Data-START## Transcript exon combination :: BU560347.1, AB054001.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849381, SAMN00849382 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-371 AC174678.2 75883-76253 372-448 AC174678.2 76410-76486 449-518 AC174678.2 79040-79109 519-613 AC174678.2 79190-79284 614-838 AC174678.2 79422-79646 FEATURES Location/Qualifiers source 1..838 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="14" /map="14 28.19 cM" gene 1..838 /gene="Emc9" /gene_synonym="1500005A01Rik; Cgi112; Fam158a" /note="ER membrane protein complex subunit 9" /db_xref="GeneID:85308" /db_xref="MGI:MGI:1934682" exon 1..371 /gene="Emc9" /gene_synonym="1500005A01Rik; Cgi112; Fam158a" /inference="alignment:Splign:2.1.0" misc_feature 138..140 /gene="Emc9" /gene_synonym="1500005A01Rik; Cgi112; Fam158a" /note="upstream in-frame stop codon" CDS 174..794 /gene="Emc9" /gene_synonym="1500005A01Rik; Cgi112; Fam158a" /note="isoform 1 is encoded by transcript variant 1; UPF0172 protein FAM158A; family with sequence similarity 158, member A" /codon_start=1 /product="ER membrane protein complex subunit 9 isoform 1" /protein_id="NP_149158.1" /db_xref="CCDS:CCDS27117.1" /db_xref="GeneID:85308" /db_xref="MGI:MGI:1934682" /translation="MGEVEISARAYGKMCLHASRYPHAAVNGLLLAPATGSGECLCLT DCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQSPGPLALKIAG RIAEFFPRAVLIMLDNKKLVTRPRVPPVIVLENQGLQWVPKDKNLVMWRDWEESRQMV GALLEGRAHQHLVDFDCHLDDIRQDWTNQRLNTQITQWSGSTDGNA" exon 372..448 /gene="Emc9" /gene_synonym="1500005A01Rik; Cgi112; Fam158a" /inference="alignment:Splign:2.1.0" exon 449..518 /gene="Emc9" /gene_synonym="1500005A01Rik; Cgi112; Fam158a" /inference="alignment:Splign:2.1.0" exon 519..613 /gene="Emc9" /gene_synonym="1500005A01Rik; Cgi112; Fam158a" /inference="alignment:Splign:2.1.0" exon 614..838 /gene="Emc9" /gene_synonym="1500005A01Rik; Cgi112; Fam158a" /inference="alignment:Splign:2.1.0" regulatory 814..819 /regulatory_class="polyA_signal_sequence" /gene="Emc9" /gene_synonym="1500005A01Rik; Cgi112; Fam158a" /note="hexamer: AATAAA" polyA_site 838 /gene="Emc9" /gene_synonym="1500005A01Rik; Cgi112; Fam158a" /note="major polyA site" ORIGIN 1 gcagttggac cgaattctac cttgctaggg acgggctgca gagagtggtc gccaggcgtc 61 aggggcatct tacacccaag tgagaaggga ggcacagggc gaggccaagc tcgcctctgg 121 tggtcaggga gccgccttag tgggggttcg ggtgccggca ggccccgctc gctatggggg 181 aggtggagat ctccgcccga gcctacggga agatgtgtct gcacgcctct cggtacccac 241 acgctgctgt caacgggttg ttgctggctc ccgcgacggg gtccggagaa tgcctctgcc 301 tcaccgactg tgtgcccctc ttccacagcc atctggcctt gtccgtcatg ctggaggtcg 361 cgctcaacca ggtggatgtg tggggcgcgc aggccggtct ggtggtagct gggtactacc 421 atgccaatgc ggttttggat gaccagagcc ccgggcctct ggccttgaaa atcgctgggc 481 gaattgcaga attcttcccc agggcagtgc ttattatgct ggataataag aaattggtga 541 ctcggcctcg tgtacctcca gtcattgtcc tggagaacca gggtcttcag tgggtgccca 601 aggacaagaa cttagtgatg tggagagatt gggaggagtc acgacagatg gtgggtgcgc 661 tgttggaggg ccgggctcac cagcatcttg tggactttga ctgccatctt gatgacattc 721 ggcaggactg gaccaaccag cggcttaaca ctcaaatcac tcaatggagt ggttccacag 781 atggaaatgc ctaagtcaga agggtccaca tacaataaag acatgggctg gtgggcaa //
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