LOCUS NM_111061 545 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana peroxidase (DUF 3339) (AT3G01950), mRNA.
ACCESSION NM_111061
VERSION NM_111061.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 545)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 545)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 545)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 545)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Sep 12, 2016 this sequence version replaced NM_111061.3.
FEATURES Location/Qualifiers
source 1..545
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..545
/locus_tag="AT3G01950"
/gene_synonym="F1C9.27"
/db_xref="Araport:AT3G01950"
/db_xref="GeneID:821067"
/db_xref="TAIR:AT3G01950"
CDS 93..305
/locus_tag="AT3G01950"
/gene_synonym="F1C9.27"
/inference="Similar to RNA sequence,
EST:INSD:EG499852.1,INSD:BP854066.1,INSD:EL058538.1,
INSD:EG499853.1,INSD:ES019121.1,INSD:AU231405.1,
INSD:BP864354.2,INSD:EG498046.1,INSD:EG426985.1,
INSD:EL020895.1,INSD:EG426907.1,INSD:BP858476.1,
INSD:EG426996.1,INSD:EH885398.1,INSD:DR369024.1,
INSD:ES040945.1,INSD:EG426918.1,INSD:EG426896.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK119150.1,INSD:BT004658.1"
/note="Protein of unknown function (DUF 3339); CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF3339
(InterPro:IPR021775); BEST Arabidopsis thaliana protein
match is: Protein of unknown function (DUF 3339)
(TAIR:AT5G14110.1); Has 274 Blast hits to 269 proteins in
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 274; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink)."
/codon_start=1
/product="peroxidase (DUF 3339)"
/protein_id="NP_186844.1"
/db_xref="GeneID:821067"
/db_xref="TAIR:AT3G01950"
/db_xref="Araport:AT3G01950"
/translation="MGLDWGPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPS
IVIHTLLFFAFITISLIALHIHIYAA"
ORIGIN
1 tacgcgtaca ttataaatat aagcacataa taaagtggta gatgtttata gagagacgta
61 tattatagct agagaagaaa cagaaaacaa agatggggtt ggactgggga ccggtgctaa
121 tgtcggtaat tttcttcatc gtgttgagcc ctggagtttt gtttcagctg cccggaaaga
181 gcaaagcggt tgagttcggt gggtttcaga caagcggccc ctccattgtc atccacactc
241 tcctcttctt cgccttcatc accatctccc tcatcgccct tcacatccac atctacgccg
301 cctaattaac cctaccttcc ccttcacgtc atggctcctt ttcttcattt cttgatttct
361 gattttcttg tggaatactg ttagttcctt cttttatggt tggttcattt atcaagaata
421 atcattttta tgaaccatgt atattgtcat aattaagttc ccacttttta ttttggtttt
481 gagatttcaa agagtaagag taacttatct cgcctactta ttacagaccc caaataaaag
541 cttta
//