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Arabidopsis thaliana peroxidase (DUF 3339) (AT3G01950), mRNA

NCBI Reference Sequence: NM_111061.4

FASTA Graphics 

LOCUS       NM_111061                545 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana peroxidase (DUF 3339) (AT3G01950), mRNA.
ACCESSION   NM_111061
VERSION     NM_111061.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 545)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 545)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 545)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_111061.3.
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..545
                     /locus_tag="AT3G01950"
                     /gene_synonym="F1C9.27"
                     /db_xref="Araport:AT3G01950"
                     /db_xref="GeneID:821067"
                     /db_xref="TAIR:AT3G01950"
     CDS             93..305
                     /locus_tag="AT3G01950"
                     /gene_synonym="F1C9.27"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EG499852.1,INSD:BP854066.1,INSD:EL058538.1,
                     INSD:EG499853.1,INSD:ES019121.1,INSD:AU231405.1,
                     INSD:BP864354.2,INSD:EG498046.1,INSD:EG426985.1,
                     INSD:EL020895.1,INSD:EG426907.1,INSD:BP858476.1,
                     INSD:EG426996.1,INSD:EH885398.1,INSD:DR369024.1,
                     INSD:ES040945.1,INSD:EG426918.1,INSD:EG426896.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AK119150.1,INSD:BT004658.1"
                     /note="Protein of unknown function (DUF 3339); CONTAINS
                     InterPro DOMAIN/s: Protein of unknown function DUF3339
                     (InterPro:IPR021775); BEST Arabidopsis thaliana protein
                     match is: Protein of unknown function (DUF 3339)
                     (TAIR:AT5G14110.1); Has 274 Blast hits to 269 proteins in
                     15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
                     0; Plants - 274; Viruses - 0; Other Eukaryotes - 0
                     (source: NCBI BLink)."
                     /codon_start=1
                     /product="peroxidase (DUF 3339)"
                     /protein_id="NP_186844.1"
                     /db_xref="GeneID:821067"
                     /db_xref="TAIR:AT3G01950"
                     /db_xref="Araport:AT3G01950"
                     /translation="MGLDWGPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPS
                     IVIHTLLFFAFITISLIALHIHIYAA"
ORIGIN      
        1 tacgcgtaca ttataaatat aagcacataa taaagtggta gatgtttata gagagacgta
       61 tattatagct agagaagaaa cagaaaacaa agatggggtt ggactgggga ccggtgctaa
      121 tgtcggtaat tttcttcatc gtgttgagcc ctggagtttt gtttcagctg cccggaaaga
      181 gcaaagcggt tgagttcggt gggtttcaga caagcggccc ctccattgtc atccacactc
      241 tcctcttctt cgccttcatc accatctccc tcatcgccct tcacatccac atctacgccg
      301 cctaattaac cctaccttcc ccttcacgtc atggctcctt ttcttcattt cttgatttct
      361 gattttcttg tggaatactg ttagttcctt cttttatggt tggttcattt atcaagaata
      421 atcattttta tgaaccatgt atattgtcat aattaagttc ccacttttta ttttggtttt
      481 gagatttcaa agagtaagag taacttatct cgcctactta ttacagaccc caaataaaag
      541 cttta
//
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