LOCUS NM_111479 1000 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Ribosomal protein L12/ ATP-dependent Clp
protease adaptor protein ClpS family protein (AT3G06040), mRNA.
ACCESSION NM_111479
VERSION NM_111479.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1000)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 1000)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1000)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1000)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Sep 12, 2016 this sequence version replaced NM_111479.4.
FEATURES Location/Qualifiers
source 1..1000
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..1000
/locus_tag="AT3G06040"
/gene_synonym="F24F17.2; F24F17_2"
/db_xref="Araport:AT3G06040"
/db_xref="GeneID:819777"
/db_xref="TAIR:AT3G06040"
CDS 241..801
/locus_tag="AT3G06040"
/gene_synonym="F24F17.2; F24F17_2"
/inference="Similar to RNA sequence,
EST:INSD:EL294617.1,INSD:ES024738.1,INSD:EL311539.1,
INSD:BP819431.1,INSD:EL288333.1,INSD:ES031822.1,
INSD:DR381790.1,INSD:EL044043.1,INSD:AV787650.1,
INSD:EL970831.1,INSD:EL238377.1,INSD:ES035689.1,
INSD:EL991366.1,INSD:EL979506.1,INSD:DR347052.1,
INSD:ES143772.1,INSD:ES043043.1,INSD:ES189964.1,
INSD:BP655790.1,INSD:AV824552.1,INSD:BP798165.1,
INSD:ES144436.1,INSD:ES011834.1,INSD:DR347053.1,
INSD:CB264828.1,INSD:AV552004.1,INSD:EL994284.1,
INSD:ES034941.1,INSD:EL984811.1,INSD:ES211030.1,
INSD:BP834498.2,INSD:ES013452.1,INSD:EL241917.1,
INSD:AV542170.1,INSD:EL177654.1,INSD:AV786619.1,
INSD:ES208715.1,INSD:EH903703.1,INSD:EL993866.1,
INSD:ES208850.1,INSD:ES004351.1,INSD:ES017258.1,
INSD:EL134239.1,INSD:EH857538.1,INSD:ES088207.1,
INSD:BP610803.1,INSD:AI995493.1,INSD:ES131793.1,
INSD:DR371393.1,INSD:ES011706.1,INSD:EL111572.1,
INSD:ES006902.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY063991.1,INSD:AY096690.1"
/note="Ribosomal protein L12/ ATP-dependent Clp protease
adaptor protein ClpS family protein; FUNCTIONS IN:
structural constituent of ribosome; INVOLVED IN:
translation; LOCATED IN: ribosome, intracellular, large
ribosomal subunit; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Ribosomal protein L12, chloroplast
(InterPro:IPR015608), Ribosomal protein L7/L12,
C-terminal/adaptor protein ClpS-like (InterPro:IPR014719),
Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823);
BEST Arabidopsis thaliana protein match is: Ribosomal
protein L7/L12, oligomerisation;Ribosomal protein L7/L12,
C-terminal/adaptor protein ClpS-like (TAIR:AT1G70190.2);
Has 8332 Blast hits to 8332 proteins in 2728 species:
Archae - 0; Bacteria - 5601; Metazoa - 194; Fungi - 132;
Plants - 253; Viruses - 0; Other Eukaryotes - 2152
(source: NCBI BLink)."
/codon_start=1
/product="Ribosomal protein L12/ ATP-dependent Clp
protease adaptor protein ClpS family protein"
/protein_id="NP_187255.1"
/db_xref="GeneID:819777"
/db_xref="TAIR:AT3G06040"
/db_xref="Araport:AT3G06040"
/translation="MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSKAKPKKYKYP
SVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAK
QDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAIL
KQGVTKEEANEIIAKIKAVGGIAVME"
ORIGIN
1 gatccttatt gggcttggcc catagacaaa agtaattttg agccgaaaag aggaatcttt
61 ccactctaaa ccctatgcgt gactcatctc cgtctctcac agtaataatc aagtcagagc
121 cggcgaagct tgccgtttcc gccgttggag gagagttttt actgttgctg tcctgttgac
181 attttgagac atgaaatgat cttgggttga tgtttgtatg gtagcagagg aatagtagtc
241 atgaagctta tttcacttgt tagaaacgtt cgttctcgcc aatgtcaacc ggaagtaatc
301 tggtctgtgc aagttcgttt cttgcagcaa gactctgtct cgaaagctaa acccaagaaa
361 tacaaatacc cgtcagttta tgatccgtat ggtcctagac cccagccttc aagcaaaatc
421 atggagctag ctgagcgtat agctgcttta tctccagaag aaagaaaaca gattggtcct
481 gcactcaatg aacacctgag gcttccaaaa caacagatga tttcatcgga cggcattgga
541 gcaaaacaag ataccggagc tgggaatgta gaggagaaga aggagaagac ggctttcgat
601 gtgaagttgg agaagtttaa tgcatctgat aagatcaaag tgataaaaga agtgagaacg
661 ttcacaagtt tgggtctgaa ggaagcgaaa gagcttgtgg agaaagtccc ggctattctt
721 aaacaaggtg tgacaaagga agaagctaat gaaatcatag ccaagatcaa agctgttggt
781 ggaatcgcag ttatggagta ggtgactttt gacacttcga ttgttttttt gtttgattca
841 ctatttggta ttgtgatcac atcttggtac ttaaggtaga tgttttgtaa taacaaatcg
901 attacttgac attgagtttt caagaacttt ggtcaattgt ttgccttctc tttggaactt
961 gttcttgtcc tctatcctta tattagaaac gatgccgtat
//