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Arabidopsis thaliana hypothetical protein (DUF3133) (AT3G56410), mRNA

NCBI Reference Sequence: NM_115499.2

FASTA Graphics 

LOCUS       NM_115499               4828 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana hypothetical protein (DUF3133) (AT3G56410),
            mRNA.
ACCESSION   NM_115499
VERSION     NM_115499.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 4828)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 4828)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 4828)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 4828)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On May 13, 2003 this sequence version replaced NM_115499.1.
FEATURES             Location/Qualifiers
     source          1..4828
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..4828
                     /locus_tag="AT3G56410"
                     /db_xref="Araport:AT3G56410"
                     /db_xref="GeneID:824808"
                     /db_xref="TAIR:AT3G56410"
     CDS             73..4680
                     /locus_tag="AT3G56410"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AA040962.1,INSD:EH981166.1,INSD:AU237416.1,
                     INSD:AU228477.1,INSD:EL042596.1,INSD:EL285267.1,
                     INSD:EH830273.1,INSD:AI994971.1,INSD:EL069230.1,
                     INSD:T42935.1,INSD:EH892424.1,INSD:EL002927.1,
                     INSD:EH971171.1,INSD:EH853839.1,INSD:EL039430.1,
                     INSD:ES091707.1,INSD:EG468547.1,INSD:BP804597.1,
                     INSD:EL309876.1,INSD:EL118192.1,INSD:EL137915.1,
                     INSD:N65545.1"
                     /inference="Similar to RNA sequence, mRNA:INSD:AK228917.1"
                     /note="Protein of unknown function (DUF3133); FUNCTIONS
                     IN: molecular_function unknown; INVOLVED IN:
                     biological_process unknown; LOCATED IN: chloroplast;
                     EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9
                     growth stages; CONTAINS InterPro DOMAIN/s: Protein of
                     unknown function DUF3133 (InterPro:IPR021480); BEST
                     Arabidopsis thaliana protein match is: Protein of unknown
                     function (DUF3133) (TAIR:AT5G05190.1); Has 4873 Blast hits
                     to 3554 proteins in 469 species: Archae - 21; Bacteria -
                     552; Metazoa - 1496; Fungi - 390; Plants - 373; Viruses -
                     48; Other Eukaryotes - 1993 (source: NCBI BLink)."
                     /codon_start=1
                     /product="hypothetical protein (DUF3133)"
                     /protein_id="NP_191200.1"
                     /db_xref="GeneID:824808"
                     /db_xref="TAIR:AT3G56410"
                     /db_xref="Araport:AT3G56410"
                     /translation="MMKKKKQSRSQSSSTKKTFEPSSDSSPSPRLLSIIRSKLASSKD
                     LKHMFRGMRSRTVPGLSSQSRIVRCPKCHKLLQEPLDATSYKCGGCDSILHAKRWEPD
                     GNDHTNTIPEALLSSQNRSLSAEVESPEDGSRTPMRTTHREYNSRPSTSVERGYHPET
                     VYKPETSDIRREWMRRTDDFSETGDSDVFTSERSSPYNTRSNAAQWAQHEGRYADPPR
                     VPFYPASPSPSSAYEYGYSSPFHGSYVSASEQSYYHQQPNQFEQYSREGWFQESSVAS
                     PTRFPGETSDGKYYHRSSQSQLHDLQYHNLYEPSRSETPHHSVYSERSYVPAAAPHRS
                     TYSEHSVGISKSDTSSEKSILRNKKRYVRERNPVVKRHILPSAGGAPFATCSYCLELL
                     QLPQVSPQGKRQRYQVRCGSCSGVLKFSIREKADTVLDSPSFVDYGMDFADETVTNHQ
                     DSASEGHEEINPDGSHLTCLDDDSGETICKSNDAVILSQKILETFEDKGIKEDIRNIS
                     TKFLDLKLEALQPHLKPMGNRRLSEQQPTSSETIGETSKIHLEQSQEAHSEKSTEMDN
                     NICDIEEPEYEKNEIIKPEEIVGEGSGESLEVPVNQNERMSESSEEDERVAERSVSHS
                     EELLYKKEYVSETRVQSENTGDTYEFEWEETQETEEYEGESTLEEIGDKPQLHLDKSR
                     YTRDSICDSSLSYGEPFEDTSVKEDTEHISNTISDAKSATTHSPLNSLVNENQRFIGH
                     LDQSGEATVTISRIQEHSKYEYENLSERQELEMTISDRVTCKLEESRYETNETLEPSK
                     VGEDGSLVSFEKVSEAFETIIEGKTGEERLVSHQMDSPNENVENSYGTLEPVYLEESG
                     FAGERTWEGTIEDRAGLHLEEYESNYENYSRPFEWTSETAPTFRMHDYELGTILEPDE
                     YADGRSESSSRGSFNDDGGSEERVVFHESQVAIPEQSHYEYENSSKRQELSDTVFDIA
                     RSELQEYRYERNETLEPSKMVGDGSVVPVEKAGETFISKKNEDSSVSHQMESQNEDME
                     NSYGTKEPVYPEGSRCESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYE
                     RWTVPEPEEDANERSITSSRDSFNDHENLKGIAVSHEEEPWLVDENRTEALKVGVMVE
                     DEPSLHLTKFENETMKLEETLEWTSERAPTFRLPEYELGEMLESDNDVDERSEYSSKG
                     SFNDHEIPRELLNEEDPQLVIDGRTEAVQVGEMAKDTVSLHLEECGNESMKLDETFEW
                     TSGRTLTFRRHGYEVETKLEADEDADGRSESSSRGSFNDRGSSKERAVLHEDGSWLVD
                     DYETKALKVGVMAEDGSSLQLEKGENGKMDLDETLEPRDDIFRLSLDDTLEQERMTFH
                     LKMSQDKQESLRQTFKQGDAEKDSDVFSEGHEFPSKMAELDSDTEEEIVEEQLEHLQK
                     ENEKLSLTFEQHDHIYSTTEPSEIVGLRHALYQTQNSPLRSPLTSPIHTPIGSPLHYL
                     MASQIRSPIASTMHSHIVSPLRSPINSSGSLSDVLFFSKKT"
ORIGIN      
        1 atcaacaaag ttttattccc agaaagaaaa aagaaaaaga tcattcatca gagttaagtc
       61 aatcaccaaa ccatgatgaa gaagaagaaa cagagcagat cccagtcttc ttctaccaag
      121 aaaacttttg aaccatcctc agattcttca ccttcaccta ggctcctctc cattatccgt
      181 tctaagttgg caagtagtaa agacttgaag catatgttca gaggtatgag gagtagaacc
      241 gtgcccggat tatcttctca atctagaatc gtgagatgtc ctaagtgcca caaacttctc
      301 caggaacctt tagatgctac ttcttacaaa tgtggtggat gcgactcgat tcttcatgca
      361 aaacgttggg aacctgacgg caatgatcac acaaacacta ttcctgaggc tctcctttct
      421 tctcaaaacc gtagtttaag tgctgaggta gaatctccag aagatggtag tagaactcca
      481 atgagaacta ctcaccggga gtacaattca aggccatcga cttctgttga aagaggttat
      541 catccagaaa ctgtttacaa gcctgagaca tctgatatcc gcagagaatg gatgagaagg
      601 actgatgact tcagtgagac cggtgattct gatgtgttta cttcagaaag aagctctcca
      661 tataacacac gcagcaatgc tgcgcaatgg gcacaacatg agggaagata cgcagatcca
      721 cctcgggttc ctttctatcc agcaagtcct tccccttctt ctgcatatga atatggctac
      781 agtagtcctt ttcacgggtc ttacgtttct gcatcagagc agtcttatta tcatcaacaa
      841 ccaaaccaat tcgagcagta tagcagagaa ggctggtttc aagaatcttc tgttgcttca
      901 cctactcgtt ttccgggtga gacatctgat ggaaagtact atcacaggtc ttctcagtct
      961 cagctacatg atcttcagta tcataatctt tatgaaccaa gtagatctga aaccccgcat
     1021 cactctgtgt actctgagcg tagttatgta ccagctgctg cgccacaccg ctctacatac
     1081 tctgagcatt ctgtagggat ttctaagagt gacacaagta gtgaaaagag cattctaagg
     1141 aacaaaaaac ggtatgtcag ggaaaggaat ccggtagtga agcgccatat tctcccttca
     1201 gccggcggtg caccttttgc aacttgttcc tattgcttgg aacttctaca gcttcctcaa
     1261 gtgtctcccc aaggaaaacg tcaaagatat caagtgagat gtggcagttg ttccggtgta
     1321 cttaagttct ctattcgaga gaaagcagat actgtcctgg attcacctag ctttgtggat
     1381 tatggcatgg attttgcaga tgagactgtt actaatcacc aggattcagc atcagaaggt
     1441 catgaagaga ttaatcctga tggaagtcat ctgacgtgtt tagacgacga ttctggagaa
     1501 acaatctgca aaagtaacga tgctgttata ttgagtcaaa aaattctaga aacatttgag
     1561 gataaaggga ttaaagaaga cataaggaat atatccacca aatttttaga tttgaaattg
     1621 gaggcattac agcctcatct aaaacctatg gggaaccgca gattaagcga gcaacaacct
     1681 acatcaagtg agactattgg agagacttcc aagattcatc tagagcaatc tcaggaagct
     1741 cattcagaaa agtcaaccga gatggataat aacatttgtg atatagaaga gcctgaatat
     1801 gagaagaacg aaattattaa gccagaagaa attgtaggag aaggatcagg tgagtccttg
     1861 gaagttccag taaaccagaa cgaaaggatg agtgaatcaa gtgaagaaga tgagagagtt
     1921 gcagagagat cggtatctca tagtgaggaa cttctataca agaaagaata cgtcagtgaa
     1981 acacgtgtac agtctgagaa taccggagac acttacgagt ttgaatggga ggagactcaa
     2041 gaaactgaag aatatgaagg tgaaagtaca ttagaagaga tcggagacaa accgcagttg
     2101 catttggata aatctaggta cactcgagat tctatatgtg acagcagctt aagctatggt
     2161 gaaccatttg aggatacatc agtcaaggaa gatacggagc acatatcaaa cacaatttca
     2221 gatgcgaagt cagctacaac acattctccc ttgaactctt tggtgaatga gaatcagagg
     2281 tttataggac atcttgacca atcaggcgag gctacagtaa caatatccag gatccaggag
     2341 cactccaagt atgaatatga gaatttaagc gaaagacaag agttggaaat gaccattagt
     2401 gacagagtca cgtgtaagtt agaggagtct agatacgaga caaatgaaac tcttgagccg
     2461 agcaaggtgg gcgaagatgg atctcttgtt tctttcgaga aggtgagcga ggcattcgaa
     2521 acaatcatag aaggcaagac aggtgaagag agactggtat ctcatcaaat ggattctcca
     2581 aacgagaatg tagaaaattc ttatggaaca ttagaaccgg tttatctaga agaaagcggg
     2641 tttgcaggtg aaagaacatg ggaagggaca atagaagata gagcggggtt acatttggag
     2701 gaatatgaaa gcaactatga gaattacagc agaccatttg aatggacttc agaaacagct
     2761 ccaacatttc gcatgcatga ttatgagcta gggacaatac ttgaaccaga cgagtatgct
     2821 gacggaagat cagaatcaag ttcacggggc tccttcaatg acgatggagg ttcagaagag
     2881 agggtcgttt ttcatgagtc tcaagttgct atacctgagc agtcccacta tgagtatgag
     2941 aactcaagca aaagacaaga gttgagtgac accgtttttg acatagcaag gtctgaatta
     3001 caagagtata gatatgagag aaatgaaaca cttgagccaa gtaagatggt tggagatgga
     3061 tctgttgttc ctgttgagaa ggcgggtgaa actttcataa gcaaaaagaa tgaagacagc
     3121 tcggtatctc atcaaatgga gtctcaaaat gaagatatgg aaaattccta cggaacaaaa
     3181 gaaccggttt atccggaagg aagcagatgt gaaagtgaaa attcatgggc agagacaatg
     3241 ggagatggag cggggttgaa gttagaggaa tataatagca atccatttga atggacttct
     3301 gaaaaagctg cagcatttca tctgcatgag tatgaacgat ggacagtgcc tgaaccagaa
     3361 gaggatgcta atgaaagatc aataaccagt tcacgggatt cctttaatga ccatgaaaat
     3421 ttaaaaggga tagctgtgtc tcatgaggag gagccctggc tagtggatga gaacagaacg
     3481 gaagctctaa aagttggtgt aatggtggaa gatgaaccat cgctgcacct gacgaaattt
     3541 gaaaacgaaa caatgaaatt ggaagagaca cttgaatgga cttcagaaag agctccaaca
     3601 tttcgtctac ctgagtatga gctaggggaa atgcttgaat cagacaacga cgttgatgaa
     3661 agatcagaat atagttcaaa gggttccttc aatgatcatg aaattccaag agagttgtta
     3721 aatgaggagg atccccagct ggtgattgat ggcagaaccg aagctgtaca agtaggcgaa
     3781 atggcaaaag atacagtatc actgcacttg gaggaatgcg gaaatgaatc aatgaaactg
     3841 gatgagacat ttgaatggac gtcagggaga actttaacgt ttcgtcgcca tgggtatgag
     3901 gtagagacaa agcttgaagc agacgaggat gctgatggaa gatcagaatc tagttcaagg
     3961 ggttccttca atgatcgtgg aagttcaaaa gagagagctg tacttcacga ggatgggtct
     4021 tggctggtgg atgattatga aaccaaagcg ctaaaagtag gcgtaatggc agaagatgga
     4081 tcatcgctgc agttggagaa aggcgaaaat ggaaaaatgg atttggacga gacacttgaa
     4141 ccaagggatg atatattcag gctcagtctt gatgacacac ttgagcaaga aaggatgacg
     4201 tttcatttaa agatgtctca agataagcaa gaaagtctaa ggcagacctt taaacaaggt
     4261 gatgctgaaa aagattcaga cgtattttca gaaggccatg aatttccaag taaaatggca
     4321 gaactagata gtgacactga agaggagata gtggaagaac aattagaaca tttgcagaaa
     4381 gagaatgaga agttaagtct aacctttgaa caacatgatc acatctacag cacaacggag
     4441 ccttctgaaa ttgtgggttt gcgtcatgcg ttataccaaa cgcaaaattc acctctacga
     4501 tcacctctca cttcaccaat tcatactccc attggttctc cgctgcatta cctgatggct
     4561 tcacaaatac gttctccaat agcttcaaca atgcatagtc acatagtttc accgcttcgt
     4621 tctcccatca actcctctgg atcactctct gatgtattgt tcttcagcaa gaaaacttga
     4681 tggcacgaaa acagataagc attgttccaa gctttcccca catacttgaa gactttacct
     4741 gcgatacaaa aacagtgtgt acattgtttc aattttgttt ttgagtgatt gtaaggtttt
     4801 ctacagataa taaatcaatt cattgagt
//
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