LOCUS NM_115499 4828 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana hypothetical protein (DUF3133) (AT3G56410),
mRNA.
ACCESSION NM_115499
VERSION NM_115499.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 4828)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 4828)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4828)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 4828)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On May 13, 2003 this sequence version replaced NM_115499.1.
FEATURES Location/Qualifiers
source 1..4828
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..4828
/locus_tag="AT3G56410"
/db_xref="Araport:AT3G56410"
/db_xref="GeneID:824808"
/db_xref="TAIR:AT3G56410"
CDS 73..4680
/locus_tag="AT3G56410"
/inference="Similar to RNA sequence,
EST:INSD:AA040962.1,INSD:EH981166.1,INSD:AU237416.1,
INSD:AU228477.1,INSD:EL042596.1,INSD:EL285267.1,
INSD:EH830273.1,INSD:AI994971.1,INSD:EL069230.1,
INSD:T42935.1,INSD:EH892424.1,INSD:EL002927.1,
INSD:EH971171.1,INSD:EH853839.1,INSD:EL039430.1,
INSD:ES091707.1,INSD:EG468547.1,INSD:BP804597.1,
INSD:EL309876.1,INSD:EL118192.1,INSD:EL137915.1,
INSD:N65545.1"
/inference="Similar to RNA sequence, mRNA:INSD:AK228917.1"
/note="Protein of unknown function (DUF3133); FUNCTIONS
IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF3133 (InterPro:IPR021480); BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF3133) (TAIR:AT5G05190.1); Has 4873 Blast hits
to 3554 proteins in 469 species: Archae - 21; Bacteria -
552; Metazoa - 1496; Fungi - 390; Plants - 373; Viruses -
48; Other Eukaryotes - 1993 (source: NCBI BLink)."
/codon_start=1
/product="hypothetical protein (DUF3133)"
/protein_id="NP_191200.1"
/db_xref="GeneID:824808"
/db_xref="TAIR:AT3G56410"
/db_xref="Araport:AT3G56410"
/translation="MMKKKKQSRSQSSSTKKTFEPSSDSSPSPRLLSIIRSKLASSKD
LKHMFRGMRSRTVPGLSSQSRIVRCPKCHKLLQEPLDATSYKCGGCDSILHAKRWEPD
GNDHTNTIPEALLSSQNRSLSAEVESPEDGSRTPMRTTHREYNSRPSTSVERGYHPET
VYKPETSDIRREWMRRTDDFSETGDSDVFTSERSSPYNTRSNAAQWAQHEGRYADPPR
VPFYPASPSPSSAYEYGYSSPFHGSYVSASEQSYYHQQPNQFEQYSREGWFQESSVAS
PTRFPGETSDGKYYHRSSQSQLHDLQYHNLYEPSRSETPHHSVYSERSYVPAAAPHRS
TYSEHSVGISKSDTSSEKSILRNKKRYVRERNPVVKRHILPSAGGAPFATCSYCLELL
QLPQVSPQGKRQRYQVRCGSCSGVLKFSIREKADTVLDSPSFVDYGMDFADETVTNHQ
DSASEGHEEINPDGSHLTCLDDDSGETICKSNDAVILSQKILETFEDKGIKEDIRNIS
TKFLDLKLEALQPHLKPMGNRRLSEQQPTSSETIGETSKIHLEQSQEAHSEKSTEMDN
NICDIEEPEYEKNEIIKPEEIVGEGSGESLEVPVNQNERMSESSEEDERVAERSVSHS
EELLYKKEYVSETRVQSENTGDTYEFEWEETQETEEYEGESTLEEIGDKPQLHLDKSR
YTRDSICDSSLSYGEPFEDTSVKEDTEHISNTISDAKSATTHSPLNSLVNENQRFIGH
LDQSGEATVTISRIQEHSKYEYENLSERQELEMTISDRVTCKLEESRYETNETLEPSK
VGEDGSLVSFEKVSEAFETIIEGKTGEERLVSHQMDSPNENVENSYGTLEPVYLEESG
FAGERTWEGTIEDRAGLHLEEYESNYENYSRPFEWTSETAPTFRMHDYELGTILEPDE
YADGRSESSSRGSFNDDGGSEERVVFHESQVAIPEQSHYEYENSSKRQELSDTVFDIA
RSELQEYRYERNETLEPSKMVGDGSVVPVEKAGETFISKKNEDSSVSHQMESQNEDME
NSYGTKEPVYPEGSRCESENSWAETMGDGAGLKLEEYNSNPFEWTSEKAAAFHLHEYE
RWTVPEPEEDANERSITSSRDSFNDHENLKGIAVSHEEEPWLVDENRTEALKVGVMVE
DEPSLHLTKFENETMKLEETLEWTSERAPTFRLPEYELGEMLESDNDVDERSEYSSKG
SFNDHEIPRELLNEEDPQLVIDGRTEAVQVGEMAKDTVSLHLEECGNESMKLDETFEW
TSGRTLTFRRHGYEVETKLEADEDADGRSESSSRGSFNDRGSSKERAVLHEDGSWLVD
DYETKALKVGVMAEDGSSLQLEKGENGKMDLDETLEPRDDIFRLSLDDTLEQERMTFH
LKMSQDKQESLRQTFKQGDAEKDSDVFSEGHEFPSKMAELDSDTEEEIVEEQLEHLQK
ENEKLSLTFEQHDHIYSTTEPSEIVGLRHALYQTQNSPLRSPLTSPIHTPIGSPLHYL
MASQIRSPIASTMHSHIVSPLRSPINSSGSLSDVLFFSKKT"
ORIGIN
1 atcaacaaag ttttattccc agaaagaaaa aagaaaaaga tcattcatca gagttaagtc
61 aatcaccaaa ccatgatgaa gaagaagaaa cagagcagat cccagtcttc ttctaccaag
121 aaaacttttg aaccatcctc agattcttca ccttcaccta ggctcctctc cattatccgt
181 tctaagttgg caagtagtaa agacttgaag catatgttca gaggtatgag gagtagaacc
241 gtgcccggat tatcttctca atctagaatc gtgagatgtc ctaagtgcca caaacttctc
301 caggaacctt tagatgctac ttcttacaaa tgtggtggat gcgactcgat tcttcatgca
361 aaacgttggg aacctgacgg caatgatcac acaaacacta ttcctgaggc tctcctttct
421 tctcaaaacc gtagtttaag tgctgaggta gaatctccag aagatggtag tagaactcca
481 atgagaacta ctcaccggga gtacaattca aggccatcga cttctgttga aagaggttat
541 catccagaaa ctgtttacaa gcctgagaca tctgatatcc gcagagaatg gatgagaagg
601 actgatgact tcagtgagac cggtgattct gatgtgttta cttcagaaag aagctctcca
661 tataacacac gcagcaatgc tgcgcaatgg gcacaacatg agggaagata cgcagatcca
721 cctcgggttc ctttctatcc agcaagtcct tccccttctt ctgcatatga atatggctac
781 agtagtcctt ttcacgggtc ttacgtttct gcatcagagc agtcttatta tcatcaacaa
841 ccaaaccaat tcgagcagta tagcagagaa ggctggtttc aagaatcttc tgttgcttca
901 cctactcgtt ttccgggtga gacatctgat ggaaagtact atcacaggtc ttctcagtct
961 cagctacatg atcttcagta tcataatctt tatgaaccaa gtagatctga aaccccgcat
1021 cactctgtgt actctgagcg tagttatgta ccagctgctg cgccacaccg ctctacatac
1081 tctgagcatt ctgtagggat ttctaagagt gacacaagta gtgaaaagag cattctaagg
1141 aacaaaaaac ggtatgtcag ggaaaggaat ccggtagtga agcgccatat tctcccttca
1201 gccggcggtg caccttttgc aacttgttcc tattgcttgg aacttctaca gcttcctcaa
1261 gtgtctcccc aaggaaaacg tcaaagatat caagtgagat gtggcagttg ttccggtgta
1321 cttaagttct ctattcgaga gaaagcagat actgtcctgg attcacctag ctttgtggat
1381 tatggcatgg attttgcaga tgagactgtt actaatcacc aggattcagc atcagaaggt
1441 catgaagaga ttaatcctga tggaagtcat ctgacgtgtt tagacgacga ttctggagaa
1501 acaatctgca aaagtaacga tgctgttata ttgagtcaaa aaattctaga aacatttgag
1561 gataaaggga ttaaagaaga cataaggaat atatccacca aatttttaga tttgaaattg
1621 gaggcattac agcctcatct aaaacctatg gggaaccgca gattaagcga gcaacaacct
1681 acatcaagtg agactattgg agagacttcc aagattcatc tagagcaatc tcaggaagct
1741 cattcagaaa agtcaaccga gatggataat aacatttgtg atatagaaga gcctgaatat
1801 gagaagaacg aaattattaa gccagaagaa attgtaggag aaggatcagg tgagtccttg
1861 gaagttccag taaaccagaa cgaaaggatg agtgaatcaa gtgaagaaga tgagagagtt
1921 gcagagagat cggtatctca tagtgaggaa cttctataca agaaagaata cgtcagtgaa
1981 acacgtgtac agtctgagaa taccggagac acttacgagt ttgaatggga ggagactcaa
2041 gaaactgaag aatatgaagg tgaaagtaca ttagaagaga tcggagacaa accgcagttg
2101 catttggata aatctaggta cactcgagat tctatatgtg acagcagctt aagctatggt
2161 gaaccatttg aggatacatc agtcaaggaa gatacggagc acatatcaaa cacaatttca
2221 gatgcgaagt cagctacaac acattctccc ttgaactctt tggtgaatga gaatcagagg
2281 tttataggac atcttgacca atcaggcgag gctacagtaa caatatccag gatccaggag
2341 cactccaagt atgaatatga gaatttaagc gaaagacaag agttggaaat gaccattagt
2401 gacagagtca cgtgtaagtt agaggagtct agatacgaga caaatgaaac tcttgagccg
2461 agcaaggtgg gcgaagatgg atctcttgtt tctttcgaga aggtgagcga ggcattcgaa
2521 acaatcatag aaggcaagac aggtgaagag agactggtat ctcatcaaat ggattctcca
2581 aacgagaatg tagaaaattc ttatggaaca ttagaaccgg tttatctaga agaaagcggg
2641 tttgcaggtg aaagaacatg ggaagggaca atagaagata gagcggggtt acatttggag
2701 gaatatgaaa gcaactatga gaattacagc agaccatttg aatggacttc agaaacagct
2761 ccaacatttc gcatgcatga ttatgagcta gggacaatac ttgaaccaga cgagtatgct
2821 gacggaagat cagaatcaag ttcacggggc tccttcaatg acgatggagg ttcagaagag
2881 agggtcgttt ttcatgagtc tcaagttgct atacctgagc agtcccacta tgagtatgag
2941 aactcaagca aaagacaaga gttgagtgac accgtttttg acatagcaag gtctgaatta
3001 caagagtata gatatgagag aaatgaaaca cttgagccaa gtaagatggt tggagatgga
3061 tctgttgttc ctgttgagaa ggcgggtgaa actttcataa gcaaaaagaa tgaagacagc
3121 tcggtatctc atcaaatgga gtctcaaaat gaagatatgg aaaattccta cggaacaaaa
3181 gaaccggttt atccggaagg aagcagatgt gaaagtgaaa attcatgggc agagacaatg
3241 ggagatggag cggggttgaa gttagaggaa tataatagca atccatttga atggacttct
3301 gaaaaagctg cagcatttca tctgcatgag tatgaacgat ggacagtgcc tgaaccagaa
3361 gaggatgcta atgaaagatc aataaccagt tcacgggatt cctttaatga ccatgaaaat
3421 ttaaaaggga tagctgtgtc tcatgaggag gagccctggc tagtggatga gaacagaacg
3481 gaagctctaa aagttggtgt aatggtggaa gatgaaccat cgctgcacct gacgaaattt
3541 gaaaacgaaa caatgaaatt ggaagagaca cttgaatgga cttcagaaag agctccaaca
3601 tttcgtctac ctgagtatga gctaggggaa atgcttgaat cagacaacga cgttgatgaa
3661 agatcagaat atagttcaaa gggttccttc aatgatcatg aaattccaag agagttgtta
3721 aatgaggagg atccccagct ggtgattgat ggcagaaccg aagctgtaca agtaggcgaa
3781 atggcaaaag atacagtatc actgcacttg gaggaatgcg gaaatgaatc aatgaaactg
3841 gatgagacat ttgaatggac gtcagggaga actttaacgt ttcgtcgcca tgggtatgag
3901 gtagagacaa agcttgaagc agacgaggat gctgatggaa gatcagaatc tagttcaagg
3961 ggttccttca atgatcgtgg aagttcaaaa gagagagctg tacttcacga ggatgggtct
4021 tggctggtgg atgattatga aaccaaagcg ctaaaagtag gcgtaatggc agaagatgga
4081 tcatcgctgc agttggagaa aggcgaaaat ggaaaaatgg atttggacga gacacttgaa
4141 ccaagggatg atatattcag gctcagtctt gatgacacac ttgagcaaga aaggatgacg
4201 tttcatttaa agatgtctca agataagcaa gaaagtctaa ggcagacctt taaacaaggt
4261 gatgctgaaa aagattcaga cgtattttca gaaggccatg aatttccaag taaaatggca
4321 gaactagata gtgacactga agaggagata gtggaagaac aattagaaca tttgcagaaa
4381 gagaatgaga agttaagtct aacctttgaa caacatgatc acatctacag cacaacggag
4441 ccttctgaaa ttgtgggttt gcgtcatgcg ttataccaaa cgcaaaattc acctctacga
4501 tcacctctca cttcaccaat tcatactccc attggttctc cgctgcatta cctgatggct
4561 tcacaaatac gttctccaat agcttcaaca atgcatagtc acatagtttc accgcttcgt
4621 tctcccatca actcctctgg atcactctct gatgtattgt tcttcagcaa gaaaacttga
4681 tggcacgaaa acagataagc attgttccaa gctttcccca catacttgaa gactttacct
4741 gcgatacaaa aacagtgtgt acattgtttc aattttgttt ttgagtgatt gtaaggtttt
4801 ctacagataa taaatcaatt cattgagt
//