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Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily protein (AT4G14820), mRNA

NCBI Reference Sequence: NM_117568.2

FASTA Graphics 

LOCUS       NM_117568               2770 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily
            protein (AT4G14820), mRNA.
ACCESSION   NM_117568
VERSION     NM_117568.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2770)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (bases 1 to 2770)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2770)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2770)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003075).
            
            On Sep 12, 2016 this sequence version replaced NM_117568.1.
FEATURES             Location/Qualifiers
     source          1..2770
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     gene            1..2770
                     /locus_tag="AT4G14820"
                     /gene_synonym="DL3450C; FCAALL.330"
                     /db_xref="Araport:AT4G14820"
                     /db_xref="GeneID:827139"
                     /db_xref="TAIR:AT4G14820"
     CDS             76..2244
                     /locus_tag="AT4G14820"
                     /gene_synonym="DL3450C; FCAALL.330"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL176241.1,INSD:ES053653.1"
                     /note="Pentatricopeptide repeat (PPR) superfamily protein;
                     CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
                     (InterPro:IPR002885); BEST Arabidopsis thaliana protein
                     match is: Tetratricopeptide repeat (TPR)-like superfamily
                     protein (TAIR:AT2G29760.1); Has 42785 Blast hits to 14682
                     proteins in 270 species: Archae - 0; Bacteria - 16;
                     Metazoa - 63; Fungi - 147; Plants - 41807; Viruses - 0;
                     Other Eukaryotes - 752 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Pentatricopeptide repeat (PPR) superfamily
                     protein"
                     /protein_id="NP_193218.1"
                     /db_xref="GeneID:827139"
                     /db_xref="TAIR:AT4G14820"
                     /db_xref="Araport:AT4G14820"
                     /translation="MTLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVINHKL
                     NSFLFNLSVSSSSINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRI
                     RHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCG
                     RINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNI
                     VSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR
                     NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEE
                     MCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKC
                     GGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVG
                     VLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMP
                     VASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDV
                     RNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAG
                     YVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVC
                     EDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW"
ORIGIN      
        1 atatttttta aaagaatata tcgatttatg tgttacgtgt gatgatgatt cttttaaatt
       61 caattgtata cgccgatgac acttccgccg ccaatagcgt caacggccgc gaatacaatt
      121 ctagagaaac tctcattctg caaatcactc aaccacatca agcaactcca tgctcacatc
      181 ctccgtacag tgatcaacca caaactcaac tcctttctct ttaacctctc cgtctcttct
      241 tcctctatca atctcagcta cgctctcaat gtcttttcat ctattccctc tccgcctgaa
      301 tccatcgtct tcaatccatt tctccgggat ctatctcgtt ccagtgaacc tagagcgacg
      361 attctgttct atcagaggat tagacatgtt ggtggtcgtc ttgatcaatt cagcttcctt
      421 ccgattctta aagcagtttc caaagtctcg gccttgttcg agggtatgga gcttcacggc
      481 gttgcgttca agattgcgac tttgtgcgac ccttttgttg agactggttt tatggatatg
      541 tacgcgtctt gtggtagaat taactacgcg cgcaatgtgt tcgacgaaat gtcgcataga
      601 gatgttgtta cgtggaatac tatgattgag aggtattgcc gattcggtct tgtagatgaa
      661 gcctttaagc tttttgagga gatgaaggat tctaatgtga tgccagatga aatgattctc
      721 tgtaacattg tctctgcatg tggtcgtact gggaatatga gatataacag agctatttac
      781 gagtttttga tagaaaatga tgttaggatg gatactcatt tgttgactgc tcttgttact
      841 atgtatgctg gagctggttg tatggatatg gcaagggagt tttttaggaa gatgtcagtg
      901 agaaacttgt ttgtttcgac tgccatggtt tctgggtatt caaaatgtgg gagactcgat
      961 gatgctcagg ttatatttga ccaaacggaa aagaaagatt tggtgtgttg gaccacaatg
     1021 atttcggctt atgttgaaag tgattatcct caagaagctt taagagtttt tgaggaaatg
     1081 tgttgctctg ggatcaaacc tgatgtggtt agcatgttca gtgttatatc tgcttgtgct
     1141 aaccttggta ttctggataa agcgaaatgg gttcacagtt gcatacatgt taacgggttg
     1201 gaatcagagt tgtcaataaa taatgccctc attaacatgt atgcgaaatg tggaggtttg
     1261 gatgcaacaa gagacgtgtt tgagaagatg ccaaggagga atgtagtgtc gtggagctct
     1321 atgatcaatg cgttatctat gcatggagaa gccagtgatg cacttagctt atttgcccga
     1381 atgaaacagg aaaatgtcga gcccaatgaa gtcacttttg taggagttct ctatggttgt
     1441 agccactcag gactagttga agaaggtaaa aagatctttg catcaatgac tgatgaatac
     1501 aatattactc caaaacttga gcattatgga tgcatggtgg atctctttgg ccgagctaat
     1561 ctcttacgag aagctcttga ggttatagaa tcaatgccag tagcgtctaa tgtagtcata
     1621 tggggatcac tgatgtcagc ttgtagaatc catggtgagc ttgagttagg caaatttgca
     1681 gccaaacgta tcctcgagct ggagcctgat catgacgggg ctcttgtgtt aatgtccaat
     1741 atatacgcta gagaacagag atgggaggac gtaaggaaca taagacgtgt aatggaggaa
     1801 aagaatgtgt tcaaggagaa aggtcttagc cggattgacc aaaacgggaa atcacacgag
     1861 tttctcatcg gtgacaagag acataagcaa tcaaatgaga tttatgcgaa gctagacgag
     1921 gttgtaagta aactgaagct agccggttac gttccagact gtggtagcgt tttggtggat
     1981 gtagaggagg aagaaaagaa ggatttggtt ctatggcata gcgaaaagct cgcgctctgc
     2041 ttcggtctga tgaatgagga aaaagaagaa gagaaagact cgtgcggtgt tattagaata
     2101 gtgaagaatc taagggtgtg tgaggattgt caccttttct tcaagctcgt ctctaaagtg
     2161 tatgaacgag agatcatagt gagagatcga actaggtttc actgttataa aaacggtctg
     2221 tgttcttgca gagattactg gtgagtttag taacaaataa atattaattt tgctcaaagt
     2281 attaattttg taacttttat tatactttac attagccaaa actttaaggc aaaagtgaga
     2341 aaaagatgac tacatgaatt atgtggtgtt agatcttccg aacttcttgg acatcttcgg
     2401 tgataactca ccggacctcc ttcgtagcat ctgtctcatg ccgtcggcga cgagttctgc
     2461 ggggttagcg ttaaacttgc cacaaaacga catgtgtgca ttaacagctt cctccaccgt
     2521 cttcgaacta cggctgaatt cgtcgcttac cgcctcggag caaagcccac aaagccattt
     2581 cccggcgaag ttagctttga ctttactaat gtagtgttgt gtacaatctt ccattaagcc
     2641 gcaacactcg cacgtcaccg attcaatctc cattattgac taatctagag ctctgaacga
     2701 gaaagaaaat gattcaacgt ttttgaaatt atgattctct aatttggaat ggaatgcttt
     2761 cgtgaatatg
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for Pentatricopeptide repeat (PPR) superfamily protein (NP_193218.1).

More about the AT4G14820 gene

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