LOCUS NM_117568 2770 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily
protein (AT4G14820), mRNA.
ACCESSION NM_117568
VERSION NM_117568.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2770)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 2770)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2770)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2770)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003075).
On Sep 12, 2016 this sequence version replaced NM_117568.1.
FEATURES Location/Qualifiers
source 1..2770
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
gene 1..2770
/locus_tag="AT4G14820"
/gene_synonym="DL3450C; FCAALL.330"
/db_xref="Araport:AT4G14820"
/db_xref="GeneID:827139"
/db_xref="TAIR:AT4G14820"
CDS 76..2244
/locus_tag="AT4G14820"
/gene_synonym="DL3450C; FCAALL.330"
/inference="Similar to RNA sequence,
EST:INSD:EL176241.1,INSD:ES053653.1"
/note="Pentatricopeptide repeat (PPR) superfamily protein;
CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: Tetratricopeptide repeat (TPR)-like superfamily
protein (TAIR:AT2G29760.1); Has 42785 Blast hits to 14682
proteins in 270 species: Archae - 0; Bacteria - 16;
Metazoa - 63; Fungi - 147; Plants - 41807; Viruses - 0;
Other Eukaryotes - 752 (source: NCBI BLink)."
/codon_start=1
/product="Pentatricopeptide repeat (PPR) superfamily
protein"
/protein_id="NP_193218.1"
/db_xref="GeneID:827139"
/db_xref="TAIR:AT4G14820"
/db_xref="Araport:AT4G14820"
/translation="MTLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVINHKL
NSFLFNLSVSSSSINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRI
RHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCG
RINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNI
VSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR
NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEE
MCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKC
GGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVG
VLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMP
VASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDV
RNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAG
YVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVC
EDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW"
ORIGIN
1 atatttttta aaagaatata tcgatttatg tgttacgtgt gatgatgatt cttttaaatt
61 caattgtata cgccgatgac acttccgccg ccaatagcgt caacggccgc gaatacaatt
121 ctagagaaac tctcattctg caaatcactc aaccacatca agcaactcca tgctcacatc
181 ctccgtacag tgatcaacca caaactcaac tcctttctct ttaacctctc cgtctcttct
241 tcctctatca atctcagcta cgctctcaat gtcttttcat ctattccctc tccgcctgaa
301 tccatcgtct tcaatccatt tctccgggat ctatctcgtt ccagtgaacc tagagcgacg
361 attctgttct atcagaggat tagacatgtt ggtggtcgtc ttgatcaatt cagcttcctt
421 ccgattctta aagcagtttc caaagtctcg gccttgttcg agggtatgga gcttcacggc
481 gttgcgttca agattgcgac tttgtgcgac ccttttgttg agactggttt tatggatatg
541 tacgcgtctt gtggtagaat taactacgcg cgcaatgtgt tcgacgaaat gtcgcataga
601 gatgttgtta cgtggaatac tatgattgag aggtattgcc gattcggtct tgtagatgaa
661 gcctttaagc tttttgagga gatgaaggat tctaatgtga tgccagatga aatgattctc
721 tgtaacattg tctctgcatg tggtcgtact gggaatatga gatataacag agctatttac
781 gagtttttga tagaaaatga tgttaggatg gatactcatt tgttgactgc tcttgttact
841 atgtatgctg gagctggttg tatggatatg gcaagggagt tttttaggaa gatgtcagtg
901 agaaacttgt ttgtttcgac tgccatggtt tctgggtatt caaaatgtgg gagactcgat
961 gatgctcagg ttatatttga ccaaacggaa aagaaagatt tggtgtgttg gaccacaatg
1021 atttcggctt atgttgaaag tgattatcct caagaagctt taagagtttt tgaggaaatg
1081 tgttgctctg ggatcaaacc tgatgtggtt agcatgttca gtgttatatc tgcttgtgct
1141 aaccttggta ttctggataa agcgaaatgg gttcacagtt gcatacatgt taacgggttg
1201 gaatcagagt tgtcaataaa taatgccctc attaacatgt atgcgaaatg tggaggtttg
1261 gatgcaacaa gagacgtgtt tgagaagatg ccaaggagga atgtagtgtc gtggagctct
1321 atgatcaatg cgttatctat gcatggagaa gccagtgatg cacttagctt atttgcccga
1381 atgaaacagg aaaatgtcga gcccaatgaa gtcacttttg taggagttct ctatggttgt
1441 agccactcag gactagttga agaaggtaaa aagatctttg catcaatgac tgatgaatac
1501 aatattactc caaaacttga gcattatgga tgcatggtgg atctctttgg ccgagctaat
1561 ctcttacgag aagctcttga ggttatagaa tcaatgccag tagcgtctaa tgtagtcata
1621 tggggatcac tgatgtcagc ttgtagaatc catggtgagc ttgagttagg caaatttgca
1681 gccaaacgta tcctcgagct ggagcctgat catgacgggg ctcttgtgtt aatgtccaat
1741 atatacgcta gagaacagag atgggaggac gtaaggaaca taagacgtgt aatggaggaa
1801 aagaatgtgt tcaaggagaa aggtcttagc cggattgacc aaaacgggaa atcacacgag
1861 tttctcatcg gtgacaagag acataagcaa tcaaatgaga tttatgcgaa gctagacgag
1921 gttgtaagta aactgaagct agccggttac gttccagact gtggtagcgt tttggtggat
1981 gtagaggagg aagaaaagaa ggatttggtt ctatggcata gcgaaaagct cgcgctctgc
2041 ttcggtctga tgaatgagga aaaagaagaa gagaaagact cgtgcggtgt tattagaata
2101 gtgaagaatc taagggtgtg tgaggattgt caccttttct tcaagctcgt ctctaaagtg
2161 tatgaacgag agatcatagt gagagatcga actaggtttc actgttataa aaacggtctg
2221 tgttcttgca gagattactg gtgagtttag taacaaataa atattaattt tgctcaaagt
2281 attaattttg taacttttat tatactttac attagccaaa actttaaggc aaaagtgaga
2341 aaaagatgac tacatgaatt atgtggtgtt agatcttccg aacttcttgg acatcttcgg
2401 tgataactca ccggacctcc ttcgtagcat ctgtctcatg ccgtcggcga cgagttctgc
2461 ggggttagcg ttaaacttgc cacaaaacga catgtgtgca ttaacagctt cctccaccgt
2521 cttcgaacta cggctgaatt cgtcgcttac cgcctcggag caaagcccac aaagccattt
2581 cccggcgaag ttagctttga ctttactaat gtagtgttgt gtacaatctt ccattaagcc
2641 gcaacactcg cacgtcaccg attcaatctc cattattgac taatctagag ctctgaacga
2701 gaaagaaaat gattcaacgt ttttgaaatt atgattctct aatttggaat ggaatgcttt
2761 cgtgaatatg
//