LOCUS NM_119379 1046 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Ubiquitin-like superfamily protein
(AT4G32270), mRNA.
ACCESSION NM_119379
VERSION NM_119379.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1046)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 1046)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1046)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1046)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003075).
On Sep 12, 2016 this sequence version replaced NM_119379.2.
FEATURES Location/Qualifiers
source 1..1046
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
gene 1..1046
/locus_tag="AT4G32270"
/gene_synonym="F10M6.90; F10M6_90"
/db_xref="Araport:AT4G32270"
/db_xref="GeneID:829360"
/db_xref="TAIR:AT4G32270"
CDS 181..900
/locus_tag="AT4G32270"
/gene_synonym="F10M6.90; F10M6_90"
/inference="Similar to RNA sequence,
EST:INSD:ES029785.1,INSD:EH914536.1,INSD:EL996438.1,
INSD:AV551968.1,INSD:AV527876.1,INSD:BP783117.1,
INSD:AV521184.1,INSD:AV541690.1,INSD:DR224799.1,
INSD:BX841468.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK117743.1,INSD:BX829232.1,INSD:BX828967.1,
INSD:BX828756.1"
/note="Ubiquitin-like superfamily protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
Ubiquitin-like superfamily protein (TAIR:AT5G25340.1); Has
132 Blast hits to 130 proteins in 45 species: Archae - 0;
Bacteria - 0; Metazoa - 63; Fungi - 0; Plants - 66;
Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink)."
/codon_start=1
/product="Ubiquitin-like superfamily protein"
/protein_id="NP_194954.2"
/db_xref="GeneID:829360"
/db_xref="TAIR:AT4G32270"
/db_xref="Araport:AT4G32270"
/translation="MDVPPRRSLAASLSPLRLIDGLPRRRSFNYNQMPEEPIKLTVLK
LDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPGKISWPHVWGQFCLSYEDKRLIN
ESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHKSKTPRVSSFKQLKLFSTTPETRKKN
VIREVEEDGVVDSIPRSQPSFLATVLGGLLSYKSTPSQRGTKYRNVTASRVFNKLIAR
FRFKCNSEKDVWNRKKLISET"
ORIGIN
1 gatcccttaa ccatgatttc cttcaaagta tattcccctt cctcatcctc ttcccatgct
61 catggtatca atcttccact ctgacccaac tcaagctctg atttctccta ctccgtcgcc
121 aaaaatcttg gaagtagatg tcttagcccg ggaaaatcaa attttctcaa taatcaatct
181 atggacgttc caccacgccg ctctttggct gcgtctctct cgcctctccg gctaatcgat
241 ggactccctc gtcggaggag tttcaattat aatcagatgc ctgaagagcc catcaaactc
301 actgttctca agcttgatgg atcttccttt ggtattcaag tgttgaagac agcgacagta
361 ggggagctca agatggcagt agaagctgcg ttttctcact tgcccatctc aggccctggc
421 aagatctcat ggccgcatgt ttggggacaa ttctgcttat cttatgaaga taaaagattg
481 attaatgagt ctgagtacct cactgaattt ggcattaaag acggcgatca gcttcggttc
541 atccgccata tctcaaacta ctgcatgtta atggtgaagc ataagagcaa gacaccccgt
601 gtttcttctt tcaaacaact caaactgttc tcaaccacac cggaaacccg gaaaaagaac
661 gtaataaggg aagttgaaga agacggtgtt gttgactcca tccctcggag ccaaccaagc
721 tttctagcaa ctgtattggg aggtttgctc tcttacaagt cgacgccaag tcaacgaggt
781 actaaataca gaaacgtgac tgcaagtaga gtttttaaca aactcattgc aaggtttcgt
841 ttcaagtgta attccgagaa ggatgtgtgg aacagaaaaa aactcatatc cgaaacctaa
901 aaaaaagcac tccttttcta tcatttgatt cttgtagaga ttttgatttc ctaatcttgg
961 tgtttatata caaacttgga tgttgtgtgt gtgcaaaatg aataaggcat tgtgtattta
1021 cgtttgtagt ggatataatt gcaacc
//