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Arabidopsis thaliana Spo11/DNA topoisomerase VI, subunit A protein (RHL2), mRNA

NCBI Reference Sequence: NM_120360.4

FASTA Graphics 

LOCUS       NM_120360               1659 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Spo11/DNA topoisomerase VI, subunit A protein
            (RHL2), mRNA.
ACCESSION   NM_120360
VERSION     NM_120360.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1659)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1659)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1659)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_120360.3.
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1659
                     /gene="RHL2"
                     /locus_tag="AT5G02820"
                     /gene_synonym="BIN5; BRASSINOSTEROID INSENSITIVE 5;
                     F9G14.130; F9G14_130; ROOT HAIRLESS 2; SPO11-3"
                     /note="Involved in the patterning and shape of leaf
                     trichomes. Encodes the DNA topoisomerase VI SPO11-3,
                     involved in endoreduplication"
                     /db_xref="Araport:AT5G02820"
                     /db_xref="GeneID:831314"
                     /db_xref="TAIR:AT5G02820"
     CDS             105..1388
                     /gene="RHL2"
                     /locus_tag="AT5G02820"
                     /gene_synonym="BIN5; BRASSINOSTEROID INSENSITIVE 5;
                     F9G14.130; F9G14_130; ROOT HAIRLESS 2; SPO11-3"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR350099.1,INSD:AV522732.1,INSD:AU228636.1,
                     INSD:BP779675.1,INSD:EL234507.1,INSD:AU229543.1,
                     INSD:BP794826.1,INSD:BP601235.1,INSD:BP783143.1,
                     INSD:BP792524.1,INSD:EG486686.1,INSD:ES182059.1,
                     INSD:EL996477.1,INSD:DR350098.1,INSD:BG459183.1,
                     INSD:AV542155.1,INSD:AI995290.1,INSD:BP613574.1,
                     INSD:AV523333.1,INSD:BP778108.1,INSD:AV542101.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AJ297842.1,INSD:BX832591.1,INSD:AF323679.1,
                     INSD:BX831096.1,INSD:BX830004.1,INSD:BT028966.1,
                     INSD:BX830246.1"
                     /note="ROOT HAIRLESS 2 (RHL2); CONTAINS InterPro DOMAIN/s:
                     Spo11/DNA topoisomerase VI, subunit A, N-terminal
                     (InterPro:IPR013049), DNA topoisomerase VI, subunit A
                     (InterPro:IPR004085), Spo11/DNA topoisomerase VI, subunit
                     A (InterPro:IPR002815); BEST Arabidopsis thaliana protein
                     match is: Spo11/DNA topoisomerase VI, subunit A protein
                     (TAIR:AT3G13170.1); Has 936 Blast hits to 932 proteins in
                     314 species: Archae - 223; Bacteria - 16; Metazoa - 170;
                     Fungi - 119; Plants - 152; Viruses - 0; Other Eukaryotes -
                     256 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Spo11/DNA topoisomerase VI, subunit A protein"
                     /protein_id="NP_195902.1"
                     /db_xref="GeneID:831314"
                     /db_xref="TAIR:AT5G02820"
                     /db_xref="Araport:AT5G02820"
                     /translation="MADKKKRKRSKDDEAEELPFKSILESDDVITELLKSYISSSIKA
                     AAGAGGASSSSSKPLTLADLSLSSSCREVADLSLSSVQTEIETVIVQIARSILAGDGF
                     SFSVPSRAASNQLYVPELDRIVLKDKSTLRPFASVSSVRKTTITTRILALIHQLCLRN
                     IHVTKRDLFYTDVKLFQDQTQSDAVLDDVSCMLGCTRSSLNVIAAEKGVVVGRLIFSD
                     NGDMIDCTKMGMGGKAIPPNIDRVGDMQSDAMFILLVEKDAAYMRLAEDRFYNRFPCI
                     IVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANL
                     TTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKTGKDMLEEDFVKKNPGWVEELNLM
                     VKTKQKAEIQALSSFGFQYLSEVYLPLKLQQQDWL"
ORIGIN      
        1 ataacattca cgagatacgt tgacctaaag ggtaaatttt cccgccattg ttagtaccag
       61 aactctctgg gccgccgcgt ctccgtcgtc gtggctatct acagatggcg gataagaaga
      121 agcgaaagcg atcaaaagat gacgaggcgg aggaacttcc tttcaaaagc attctggaat
      181 cagacgacgt tatcacggag cttctcaaat cgtatatttc ctcttctatc aaagccgccg
      241 ccggagccgg cggtgcctcc tcctcttcat cgaaacctct aaccctagct gacctctctc
      301 tatcatcttc ctgtcgtgaa gtcgcagatc tctcactctc ctccgtgcag acagagatag
      361 agacagtcat cgtccagatc gcccgttcta ttctcgccgg tgatggcttc tccttcagtg
      421 ttccttcacg cgccgcctcg aatcagctgt atgttcctga gctcgaccgt atagtgctaa
      481 aagacaaatc taccctccgt ccatttgcct ccgtttcttc tgtcaggaaa accaccatca
      541 ccactcgtat cctcgccctt atccaccaac tctgcctcag gaacattcac gttactaagc
      601 gtgatctctt ctacaccgac gttaagcttt tccaggacca gacacagagt gatgctgtgt
      661 tggatgatgt ctcatgtatg ctcggttgca caaggtcaag tctcaatgtc attgcagcag
      721 agaaaggtgt ggtggtggga aggcttatat tcagtgacaa tggagacatg atagattgca
      781 caaagatggg aatgggtggg aaagccattc caccaaacat tgaccgggtt ggagatatgc
      841 agagtgatgc tatgttcata ctcttagttg aaaaagatgc agcttatatg aggttagctg
      901 aagacagatt ctataaccgg ttcccttgta tcatcgtgac tgcaaaaggc cagcctgatg
      961 tagctacaag gctcttcttg aggaaaatga aaatggagct taagcttccg gtacttgcct
     1021 tggtggatag tgatccttac ggattgaaga tcttgtcggt gtatggatgt gggtcgaaga
     1081 acatgtcata tgatagtgca aacttgacta cgcctgatat taagtggctt ggaattaggc
     1141 cgagtgattt ggacaagtat aagatacctg aacagtgtag gttgccgatg actgagcagg
     1201 atattaagac cgggaaggat atgctagagg aggatttcgt gaagaaaaat cccgggtggg
     1261 tcgaggaact taacctgatg gtgaaaacga agcaaaaggc tgagattcag gcgttgagct
     1321 cttttggttt ccagtattta tcggaagttt acttgcccct gaaactgcag cagcaggatt
     1381 ggctctgata atcaggtttc ttcctgatca attagataga ccaacaagtg tactctacaa
     1441 atttcgaatt tttgataatg caattgcctg tttcttagca tgtgaattat tattgcaaag
     1501 atcgaaattt ggttttaaat ttatggttga atctacacag aactggaaag atagctgtca
     1561 gatgattatt tagaagacaa ctcttttgtt tatttagaag attgtataca atatgatggg
     1621 cattgagatg atatgcaatc tttccccatt cttttctgc
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for Spo11/DNA topoisomerase VI, subunit A protein (NP_195902.1).

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