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NCBI Reference Sequence: NR_027030.1
FASTA Graphics
LOCUS NR_027030 3517 bp RNA linear PRI 06-SEP-2020 DEFINITION Homo sapiens long intergenic non-protein coding RNA 1312 (LINC01312), long non-coding RNA. ACCESSION NR_027030 NR_027029 VERSION NR_027030.1 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3517) AUTHORS Feenstra B, Geller F, Krogh C, Hollegaard MV, Gortz S, Boyd HA, Murray JC, Hougaard DM and Melbye M. TITLE Common variants near MBNL1 and NKX2-5 are associated with infantile hypertrophic pyloric stenosis JOURNAL Nat. Genet. 44 (3), 334-337 (2012) PUBMED 22306654 REMARK Publication Status: Online-Only COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from AL137011.9. On May 18, 2011 this sequence version replaced NR_027029.1. Sequence Note: The RefSeq transcript was derived from the reference genome assembly. The genomic coordinates were determined from alignments. ##Evidence-Data-START## Transcript exon combination :: BC032958.2, BG718545.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968968, SAMEA2148874 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-589 AL137011.9 53919-54507 590-721 AL137011.9 70365-70496 722-3517 AL137011.9 83969-86764 FEATURES Location/Qualifiers source 1..3517 /organism="Homo sapiens" /mol_type="transcribed RNA" /db_xref="taxon:9606" /chromosome="6" /map="6q23.2" gene 1..3517 /gene="LINC01312" /note="long intergenic non-protein coding RNA 1312" /db_xref="GeneID:154089" /db_xref="HGNC:HGNC:28525" ncRNA 1..3517 /ncRNA_class="lncRNA" /gene="LINC01312" /product="long intergenic non-protein coding RNA 1312" /db_xref="GeneID:154089" /db_xref="HGNC:HGNC:28525" exon 1..589 /gene="LINC01312" /inference="alignment:Splign:2.1.0" exon 590..721 /gene="LINC01312" /inference="alignment:Splign:2.1.0" exon 722..3517 /gene="LINC01312" /inference="alignment:Splign:2.1.0" regulatory 3176..3181 /regulatory_class="polyA_signal_sequence" /gene="LINC01312" /note="hexamer: AATAAA" polyA_site 3200 /gene="LINC01312" /note="major polyA site" ORIGIN 1 gtggaacacc aagacaagtg gctagaaacc ttgtacatga aaacagcggc ccacccaaag 61 tttgtctttt cctaggaagt tatagagaaa tgaggaggta acagaagagc agtcaataaa 121 agaaaaattt ctttaaaaga catatgggtg ggatgagaac gaatgattct tactttatct 181 gtagaaattg aattttgctg caactaagag agacctcgaa aatagtgatt tacacaaata 241 aaattttgtt ccatcaagaa aactgatatt cagcagtcca ggctgatgca gtggcttcaa 301 gagctcttca gcaacccagg caccttccag gtcttctttc ccaattctag tgctagtaac 361 tccttcatct catcacccaa catggctacc agagctccag acatcacgtg tacatctgag 421 ttccaggaaa ccagacagag ggagaaaaga agggcatgca cgctcacttt aaagaagact 481 tctaagaaga accacctaaa attccccaac ctagtcccaa agctcacttg gctgctttca 541 agcctggaaa atgcagtctt taagctgaaa aatgctatga caaaatcaga gattgatcat 601 gcctacaatg acaactggaa aacagaaatg aaaccatata agccaagcac tcacgcaatc 661 tttgtcctcc cagttgactt aagaacactt gtgaagaaaa tgtggcgtct ttagatctca 721 gatcccttgt ttccaactgg ttcaaataaa tagacaactc ttcattccga tggtacttct 781 tagagataaa ccacatgcat gtatcagaga aaacaactct cagcctggta aatgaacagg 841 aaaaacttgg gttagaattc tatttctttc aaggtagaga gcaaattttc ataatctcac 901 atggacatac agaccaagcc atgcatggca ctatctacat aatcaaggcg gagaacacaa 961 aaacttggat atgaatgttc acagcagcat tattcataat agtcaaaaaa tggaaacaac 1021 cgaaatgccc accaactgat gcatgaataa acaaaatgca gtgcatccat tcaatggaat 1081 attattcagc cattaaaaag gataaattac tgatacatgc tacaacatgt atgaacttca 1141 aaaacatatg ctaagtgaaa gaagccagcc atcaaggacc acaaattgta ttattcaatt 1201 tatatgaaat tctaaagtag gcaaatctgc aaagacaaaa tagtttagtg gttgtatagg 1261 gctggggtca ggagaggaga ataggagtga ctgccagtga gcaagaggtt tctggtgaaa 1321 acatggagag gaggcttgaa taattatctg aggttagatt tgttatctgg aggcaccatt 1381 acctacttaa tttcctacac aactcaaatt cactagaaaa ctactgttgg ctgtactttt 1441 ttgataatgt aattcctgta tttcaaaact gtttttaagg gttttcttaa tctctccctt 1501 aaaaaacaaa tactgagaca gttacaaagt aaaatacact ttttaaaatt ttactttcaa 1561 aagaagataa tcaaaagtga tacaatcatc acaattggca ttaaattatt gttttgatct 1621 taatatttta ttccccattc atttgctgtt cctttttgtc tgttctaatg ctataataac 1681 ttacctcagc tttaacaaaa tgaaactttg ttttcatgct ttattaacct gaagctaata 1741 attttacctt aggtgttatc aaaaagtgac ttatttttag gatgttaata tctcaaacaa 1801 cagtgttatg ctctgccacc taccaaactc tggagtgaga aaatccaatc agtttaaccg 1861 accttgcaca attaaaccat caaatacatt ccatatgcgg gcttgttggc tcgtgcctgt 1921 aatcccagca ctttgggagg tcgaggcagg tggatcgctt gagcccagga cttcaagacc 1981 agcctaggca acatggtgaa accctgtctt ttctaaaaat acaaaaatta gccaaccgtg 2041 atagtgtgct cctgggaagg ctaaggtggg agaatccttg aggccaggag gttgaggctg 2101 cagtgagctg tgattgcacc actgcacttt agtctgggtg acagagcaag accctgtctc 2161 aaacaaacaa aaaatctata atggaaaact tagaaatcta attggataat cctaagaaac 2221 tccctcctgc tcctagttcc tccctcaagt tctctaaaag gttcaggaaa caattataac 2281 actgacatct aaatgtaatt tgtaaagtat ttcttatgtt ctccctggta ttctccttaa 2341 aatcatccta gctttcccag aacctagaca atattgtctt ctagttaaaa ttttcatatg 2401 ctgatgtttt ctgccatttc tgtttggcag aaaagcaaac tggaaaactt gataaacaag 2461 aaagacctca agtaacaaaa attatatgtc attcttggct caactaacag ctccaaacct 2521 ctgaaatgtg gtagatcttt ttccaaagga agatcttact aactctcagt gtaaatctgt 2581 accttaactt tatcactgtt taaaacccat ctctaaataa cataggccaa gatctccaaa 2641 atcgataatg gggaaactgc tcaacagcat tccagaagtt cttaaccata agagtgatgc 2701 tatagtagaa agtaaaccgt gaggcatcat gcatcttgac tgaaaattcc accccacacc 2761 cactgagcta atctggagcc gccatagaag acagggaagt tggaagtaga gacctttgcg 2821 taggccatca cccctcgcca tcaatcaaaa ggaattctgt gagcttctac tgagagccta 2881 gagctctggt cagcagcaca aagacagagc caggcagaaa caactccaga gccacacctc 2941 ctctgaaaga caattgtcag gtgagatttt caaataaaac cactggggat tatccactat 3001 ctccccaaga aattcaaatg tttagaaata taaacacaac acatactttt tttcagtatt 3061 ttataaagtt caacagtttt gatgataatc acatgtatgc caaatgattt gtaaagtgta 3121 aaatttgaaa aagatcagat attaaataac aaattgaatg agaaaatacg acaacaataa 3181 aaaaaagttt tatgaatgga ctaccagttt ttgctttttt gaaaagaaat attacaataa 3241 ggttatttgc tcaaataaaa cctacctgac actcttgcaa atgtttaggg agggaaagtg 3301 tgtctccctt tatatttact gtttctctct gaagccaatt tcattttttt caacatcctg 3361 gccatctgca ttcatataaa gtggttattt tcatggataa ttcaccttat atatgaaata 3421 taaaaggtat ctggaataaa ttcattgcaa aattgatgtt acctgttaaa tcttcctagt 3481 agtttgtttt caccaaaata aaatgagtga gatttac //
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