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Saccharomyces cerevisiae S288C SNR7-L (SNR7-L), snRNA

NCBI Reference Sequence: NR_132184.1

FASTA Graphics 

LOCUS       NR_132184                214 bp    RNA     linear   PLN 17-DEC-2024
DEFINITION  Saccharomyces cerevisiae S288C SNR7-L (SNR7-L), snRNA.
ACCESSION   NR_132184
VERSION     NR_132184.1
DBLINK      BioProject: PRJNA128
KEYWORDS    RefSeq.
SOURCE      Saccharomyces cerevisiae S288C
  ORGANISM  Saccharomyces cerevisiae S288C
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Saccharomycetaceae;
            Saccharomyces.
REFERENCE   1  (bases 1 to 214)
  AUTHORS   Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M.,
            Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S.,
            Weng,S. and Cherry,J.M.
  TITLE     New data and collaborations at the Saccharomyces Genome Database:
            updated reference genome, alleles, and the Alliance of Genome
            Resources
  JOURNAL   Genetics 220 (4) (2022)
   PUBMED   34897464
REFERENCE   2  (bases 1 to 214)
  AUTHORS   Tettelin,H., Agostoni Carbone,M.L., Albermann,K., Albers,M.,
            Arroyo,J., Backes,U., Barreiros,T., Bertani,I., Bjourson,A.J.,
            Bruckner,M., Bruschi,C.V., Carignani,G., Castagnoli,L., Cerdan,E.,
            Clemente,M.L., Coblenz,A., Coglievina,M., Coissac,E., Defoor,E.,
            Del Bino,S., Delius,H., Delneri,D., de Wergifosse,P., Dujon,B.,
            Kleine,K. et al.
  TITLE     The nucleotide sequence of Saccharomyces cerevisiae chromosome VII
  JOURNAL   Nature 387 (6632 SUPPL), 81-84 (1997)
   PUBMED   9169869
REFERENCE   3  (bases 1 to 214)
  AUTHORS   Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B.,
            Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M.,
            Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and
            Oliver,S.G.
  TITLE     Life with 6000 genes
  JOURNAL   Science 274 (5287), 546 (1996)
   PUBMED   8849441
REFERENCE   4  (bases 1 to 214)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (bases 1 to 214)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2015) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   6  (bases 1 to 214)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2012) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   7  (bases 1 to 214)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2011) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Sequence update by submitter
REFERENCE   8  (bases 1 to 214)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2009) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by SGD. This record
            is derived from an annotated genomic sequence (NC_001139).
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: SGD
            Annotation Status   :: Full Annotation
            Annotation Version  :: R64-4-1
            URL                 :: http://www.yeastgenome.org/
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..214
                     /organism="Saccharomyces cerevisiae S288C"
                     /mol_type="transcribed RNA"
                     /strain="S288C"
                     /db_xref="taxon:559292"
                     /chromosome="VII"
     gene            1..214
                     /gene="SNR7-L"
                     /locus_tag="YNCG0044C"
                     /db_xref="GeneID:9164899"
     ncRNA           1..214
                     /ncRNA_class="snRNA"
                     /gene="SNR7-L"
                     /locus_tag="YNCG0044C"
                     /product="SNR7-L"
                     /experiment="EXISTENCE:direct assay:GO:0000245
                     spliceosomal complex assembly [PMID:24231520]"
                     /experiment="EXISTENCE:direct assay:GO:0000395 mRNA
                     5'-splice site recognition [PMID:18084028]"
                     /experiment="EXISTENCE:direct assay:GO:0005682 U5 snRNP
                     [PMID:11720284]"
                     /experiment="EXISTENCE:direct assay:GO:0030627 pre-mRNA
                     5'-splice site binding
                     [PMID:11453062|PMID:9430647|PMID:18084028]"
                     /experiment="EXISTENCE:direct assay:GO:0046540 U4/U6 x U5
                     tri-snRNP complex [PMID:10377396|PMID:10449419]"
                     /experiment="EXISTENCE:mutant phenotype:GO:0000350
                     generation of catalytic spliceosome for second
                     transesterification step [PMID:9430647]"
                     /experiment="EXISTENCE:mutant phenotype:GO:0000386 second
                     spliceosomal transesterification activity [PMID:9430647]"
                     /experiment="EXISTENCE:mutant phenotype:GO:0000398 mRNA
                     splicing, via spliceosome [PMID:3555841]"
                     /experiment="EXISTENCE:mutant phenotype:GO:0034403
                     alignment of 3' and 5' splice sites of mRNA
                     [PMID:9430647]"
                     /note="U5 spliceosomal RNA (U5 snRNA), long form;
                     associated with spliceosome"
                     /db_xref="GeneID:9164899"
                     /db_xref="SGD:S000006495"
ORIGIN      
        1 aagcagcttt acagatcaat ggcggaggga ggtcaacatc aagaactgtg ggccttttat
       61 tgcctataga acttataacg aacatggttc ttgcctttta ccagaaccat ccgggtgttg
      121 tctccataga aacaggtaaa gctgtccgtt actgtgggct tgccatattt tttggaactt
      181 ttctgccctt tttctcaatg agtaaggagg gcgt
//
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