LOCUS NR_132184 214 bp RNA linear PLN 17-DEC-2024
DEFINITION Saccharomyces cerevisiae S288C SNR7-L (SNR7-L), snRNA.
ACCESSION NR_132184
VERSION NR_132184.1
DBLINK BioProject: PRJNA128
KEYWORDS RefSeq.
SOURCE Saccharomyces cerevisiae S288C
ORGANISM Saccharomyces cerevisiae S288C
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae;
Saccharomyces.
REFERENCE 1 (bases 1 to 214)
AUTHORS Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M.,
Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S.,
Weng,S. and Cherry,J.M.
TITLE New data and collaborations at the Saccharomyces Genome Database:
updated reference genome, alleles, and the Alliance of Genome
Resources
JOURNAL Genetics 220 (4) (2022)
PUBMED 34897464
REFERENCE 2 (bases 1 to 214)
AUTHORS Tettelin,H., Agostoni Carbone,M.L., Albermann,K., Albers,M.,
Arroyo,J., Backes,U., Barreiros,T., Bertani,I., Bjourson,A.J.,
Bruckner,M., Bruschi,C.V., Carignani,G., Castagnoli,L., Cerdan,E.,
Clemente,M.L., Coblenz,A., Coglievina,M., Coissac,E., Defoor,E.,
Del Bino,S., Delius,H., Delneri,D., de Wergifosse,P., Dujon,B.,
Kleine,K. et al.
TITLE The nucleotide sequence of Saccharomyces cerevisiae chromosome VII
JOURNAL Nature 387 (6632 SUPPL), 81-84 (1997)
PUBMED 9169869
REFERENCE 3 (bases 1 to 214)
AUTHORS Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B.,
Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M.,
Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and
Oliver,S.G.
TITLE Life with 6000 genes
JOURNAL Science 274 (5287), 546 (1996)
PUBMED 8849441
REFERENCE 4 (bases 1 to 214)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2024) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 5 (bases 1 to 214)
CONSRTM Saccharomyces Genome Database
TITLE Direct Submission
JOURNAL Submitted (16-JAN-2015) Department of Genetics, Stanford
University, Stanford, CA 94305-5120, USA
REMARK Protein update by submitter
REFERENCE 6 (bases 1 to 214)
CONSRTM Saccharomyces Genome Database
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2012) Department of Genetics, Stanford
University, Stanford, CA 94305-5120, USA
REMARK Protein update by submitter
REFERENCE 7 (bases 1 to 214)
CONSRTM Saccharomyces Genome Database
TITLE Direct Submission
JOURNAL Submitted (31-MAR-2011) Department of Genetics, Stanford
University, Stanford, CA 94305-5120, USA
REMARK Sequence update by submitter
REFERENCE 8 (bases 1 to 214)
CONSRTM Saccharomyces Genome Database
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2009) Department of Genetics, Stanford
University, Stanford, CA 94305-5120, USA
COMMENT REVIEWED REFSEQ: This record has been curated by SGD. This record
is derived from an annotated genomic sequence (NC_001139).
##Genome-Annotation-Data-START##
Annotation Provider :: SGD
Annotation Status :: Full Annotation
Annotation Version :: R64-4-1
URL :: http://www.yeastgenome.org/
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..214
/organism="Saccharomyces cerevisiae S288C"
/mol_type="transcribed RNA"
/strain="S288C"
/db_xref="taxon:559292"
/chromosome="VII"
gene 1..214
/gene="SNR7-L"
/locus_tag="YNCG0044C"
/db_xref="GeneID:9164899"
ncRNA 1..214
/ncRNA_class="snRNA"
/gene="SNR7-L"
/locus_tag="YNCG0044C"
/product="SNR7-L"
/experiment="EXISTENCE:direct assay:GO:0000245
spliceosomal complex assembly [PMID:24231520]"
/experiment="EXISTENCE:direct assay:GO:0000395 mRNA
5'-splice site recognition [PMID:18084028]"
/experiment="EXISTENCE:direct assay:GO:0005682 U5 snRNP
[PMID:11720284]"
/experiment="EXISTENCE:direct assay:GO:0030627 pre-mRNA
5'-splice site binding
[PMID:11453062|PMID:9430647|PMID:18084028]"
/experiment="EXISTENCE:direct assay:GO:0046540 U4/U6 x U5
tri-snRNP complex [PMID:10377396|PMID:10449419]"
/experiment="EXISTENCE:mutant phenotype:GO:0000350
generation of catalytic spliceosome for second
transesterification step [PMID:9430647]"
/experiment="EXISTENCE:mutant phenotype:GO:0000386 second
spliceosomal transesterification activity [PMID:9430647]"
/experiment="EXISTENCE:mutant phenotype:GO:0000398 mRNA
splicing, via spliceosome [PMID:3555841]"
/experiment="EXISTENCE:mutant phenotype:GO:0034403
alignment of 3' and 5' splice sites of mRNA
[PMID:9430647]"
/note="U5 spliceosomal RNA (U5 snRNA), long form;
associated with spliceosome"
/db_xref="GeneID:9164899"
/db_xref="SGD:S000006495"
ORIGIN
1 aagcagcttt acagatcaat ggcggaggga ggtcaacatc aagaactgtg ggccttttat
61 tgcctataga acttataacg aacatggttc ttgcctttta ccagaaccat ccgggtgttg
121 tctccataga aacaggtaaa gctgtccgtt actgtgggct tgccatattt tttggaactt
181 ttctgccctt tttctcaatg agtaaggagg gcgt
//