LOCUS NR_184566 1638 bp RNA linear ROD 08-AUG-2023
DEFINITION Mus musculus leucine rich repeat containing 73 (Lrrc73), transcript
variant 5, non-coding RNA.
ACCESSION NR_184566
VERSION NR_184566.1
KEYWORDS RefSeq.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1638)
AUTHORS Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
S, Baldock RA, Eichele G and Ballabio A.
TITLE A high-resolution anatomical atlas of the transcriptome in the
mouse embryo
JOURNAL PLoS Biol 9 (1), e1000582 (2011)
PUBMED 21267068
REMARK Publication Status: Online-Only
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AC116739.13.
##Evidence-Data-START##
Transcript exon combination :: SRR13948564.1646409.1,
SRR17784647.737917.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMN00849374, SAMN00849375
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-647 AC116739.13 39085-39731 c
648-808 AC116739.13 38362-38522 c
809-867 AC116739.13 38178-38236 c
868-990 AC116739.13 37920-38042 c
991-1091 AC116739.13 37418-37518 c
1092-1314 AC116739.13 36831-37053 c
1315-1638 AC116739.13 36385-36708 c
FEATURES Location/Qualifiers
source 1..1638
/organism="Mus musculus"
/mol_type="transcribed RNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="17"
/map="17 22.9 cM"
gene 1..1638
/gene="Lrrc73"
/gene_synonym="Gm88"
/note="leucine rich repeat containing 73"
/db_xref="GeneID:224813"
/db_xref="MGI:MGI:2684934"
misc_RNA 1..1638
/gene="Lrrc73"
/gene_synonym="Gm88"
/product="leucine rich repeat containing 73, transcript
variant 5"
/db_xref="GeneID:224813"
/db_xref="MGI:MGI:2684934"
exon 1..647
/gene="Lrrc73"
/gene_synonym="Gm88"
/inference="alignment:Splign:2.1.0"
misc_feature 376..831
/gene="Lrrc73"
/gene_synonym="Gm88"
/inference="COORDINATES:
alignment:Blast2seq::RefSeq|NM_001111142.2"
/note="primary ORF has stop codon >50 nucleotides from the
terminal splice site; nonsense-mediated decay (NMD)
candidate"
exon 648..808
/gene="Lrrc73"
/gene_synonym="Gm88"
/inference="alignment:Splign:2.1.0"
exon 809..867
/gene="Lrrc73"
/gene_synonym="Gm88"
/inference="alignment:Splign:2.1.0"
exon 868..990
/gene="Lrrc73"
/gene_synonym="Gm88"
/inference="alignment:Splign:2.1.0"
exon 991..1091
/gene="Lrrc73"
/gene_synonym="Gm88"
/inference="alignment:Splign:2.1.0"
exon 1092..1314
/gene="Lrrc73"
/gene_synonym="Gm88"
/inference="alignment:Splign:2.1.0"
exon 1315..1638
/gene="Lrrc73"
/gene_synonym="Gm88"
/inference="alignment:Splign:2.1.0"
ORIGIN
1 atcccgcccc ggctgtcccc gagagccgtg ctgccgggcc ccgggcccgc agagcgggcg
61 cggcctccta agccgcgagg gagaggacca gcgcggggtg gctgcagctc tgtccccggc
121 cgcccccgcc cccgcctccc gccgcttctc ttccgcgcct ccgcacccag gcccgcgcct
181 gctttcgatc ccgccgcggc cgccgttgcc tccgcttccg actcagcctc tgctgcctcc
241 gcctccgcct ctgcctccgc tccggccgcg accccaaccg ggaccgcgac ctgaatcccc
301 gccccgcccc cgggccaact tctgcccagg ccgggacacc ggcggcagcc cccccgaggc
361 ccagccgtgg ggaccatgct gcctagctcc atccagattt cgggggagcc gctgtcaggc
421 gccgaggtgc gggacatctg ccgcggcctg cgcgacaacg cggtgcgcct gctctcgctg
481 cgcggctgtc gcctgtgcga ccgcgacttc ggccgcatct gccgggccct agctggagcc
541 acgtccctgg cgcagctcaa ccttaacctg ggcgtcgtgt ctagccccag ccgcatcaag
601 cagctggcag aagcgctacg gaccaaccgc tccatccagt ccctcttcct acatgggagc
661 ccactgacag atgcgggact ggccttgctg aacccagccc tggctctcca ccctgccctt
721 gtggctcttg acctggggga ctgcatgttg ggtgatgaag ccatcaacct catctgtggc
781 ctactccctc cagacggggc caagtctgga agggagatgc ttagaaactg agcagagtgg
841 aaactgatcc aggcagggga ggcgtgagtc tgaaggagct aacactgagc gccaaccctg
901 gcatcacccc caagggttgg agccgcctcg ccattgctgt ggcccacagc tcccaagtcc
961 gcgtcctcaa cctggactac aaccccctgg gcgaccatgt ggcagggatg ctggctgtag
1021 ctgtggcctc aagccgtacc ctagaagtcc tagacttgga gggcacaggg ctcaccaacc
1081 agtcagctca gaccctgctg gacatggtag aaaattaccc aacagctttg cggagcctgg
1141 tgttggccga gaacagcatt agtccagagc tgcaacaaca gatttgtgac ctcctatctg
1201 agggggagga agaggaagag atggcaggag gggctgccga cacccaggaa tgggagagag
1261 ggcgggagcc tgctgcccac cagcggagtg gcagctcctg gatgtgcccc agtgatccca
1321 gttctcagat ggtgctaatg acatcaggac taggggacag tctgttggct gagactgaga
1381 tgtgactctc cgcttggact tctgcacagc attgcatttg tctgtgtcct cactaccttc
1441 ctccacagag cagggaaagg ccctggctgg ggctctggca gctcctggta gtggcacgag
1501 gctctggaag ctgtcactgg gcaacagcct tgaggggtgg cggggggact tgaacccagg
1561 gtactgactt tgaacttgtt ggcagctctg gctgcaaccc gctggctcgg aacagatttt
1621 ataaactcca caacctga
//