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Mus musculus leucine rich repeat containing 73 (Lrrc73), transcript variant 5, non-coding RNA

NCBI Reference Sequence: NR_184566.1

FASTA Graphics 

LOCUS       NR_184566               1638 bp    RNA     linear   ROD 08-AUG-2023
DEFINITION  Mus musculus leucine rich repeat containing 73 (Lrrc73), transcript
            variant 5, non-coding RNA.
ACCESSION   NR_184566
VERSION     NR_184566.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1638)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC116739.13.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13948564.1646409.1,
                                           SRR17784647.737917.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-647               AC116739.13        39085-39731         c
            648-808             AC116739.13        38362-38522         c
            809-867             AC116739.13        38178-38236         c
            868-990             AC116739.13        37920-38042         c
            991-1091            AC116739.13        37418-37518         c
            1092-1314           AC116739.13        36831-37053         c
            1315-1638           AC116739.13        36385-36708         c
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 22.9 cM"
     gene            1..1638
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /note="leucine rich repeat containing 73"
                     /db_xref="GeneID:224813"
                     /db_xref="MGI:MGI:2684934"
     misc_RNA        1..1638
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /product="leucine rich repeat containing 73, transcript
                     variant 5"
                     /db_xref="GeneID:224813"
                     /db_xref="MGI:MGI:2684934"
     exon            1..647
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    376..831
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="COORDINATES:
                     alignment:Blast2seq::RefSeq|NM_001111142.2"
                     /note="primary ORF has stop codon >50 nucleotides from the
                     terminal splice site; nonsense-mediated decay (NMD)
                     candidate"
     exon            648..808
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
     exon            809..867
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
     exon            868..990
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1091
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
     exon            1092..1314
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1638
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atcccgcccc ggctgtcccc gagagccgtg ctgccgggcc ccgggcccgc agagcgggcg
       61 cggcctccta agccgcgagg gagaggacca gcgcggggtg gctgcagctc tgtccccggc
      121 cgcccccgcc cccgcctccc gccgcttctc ttccgcgcct ccgcacccag gcccgcgcct
      181 gctttcgatc ccgccgcggc cgccgttgcc tccgcttccg actcagcctc tgctgcctcc
      241 gcctccgcct ctgcctccgc tccggccgcg accccaaccg ggaccgcgac ctgaatcccc
      301 gccccgcccc cgggccaact tctgcccagg ccgggacacc ggcggcagcc cccccgaggc
      361 ccagccgtgg ggaccatgct gcctagctcc atccagattt cgggggagcc gctgtcaggc
      421 gccgaggtgc gggacatctg ccgcggcctg cgcgacaacg cggtgcgcct gctctcgctg
      481 cgcggctgtc gcctgtgcga ccgcgacttc ggccgcatct gccgggccct agctggagcc
      541 acgtccctgg cgcagctcaa ccttaacctg ggcgtcgtgt ctagccccag ccgcatcaag
      601 cagctggcag aagcgctacg gaccaaccgc tccatccagt ccctcttcct acatgggagc
      661 ccactgacag atgcgggact ggccttgctg aacccagccc tggctctcca ccctgccctt
      721 gtggctcttg acctggggga ctgcatgttg ggtgatgaag ccatcaacct catctgtggc
      781 ctactccctc cagacggggc caagtctgga agggagatgc ttagaaactg agcagagtgg
      841 aaactgatcc aggcagggga ggcgtgagtc tgaaggagct aacactgagc gccaaccctg
      901 gcatcacccc caagggttgg agccgcctcg ccattgctgt ggcccacagc tcccaagtcc
      961 gcgtcctcaa cctggactac aaccccctgg gcgaccatgt ggcagggatg ctggctgtag
     1021 ctgtggcctc aagccgtacc ctagaagtcc tagacttgga gggcacaggg ctcaccaacc
     1081 agtcagctca gaccctgctg gacatggtag aaaattaccc aacagctttg cggagcctgg
     1141 tgttggccga gaacagcatt agtccagagc tgcaacaaca gatttgtgac ctcctatctg
     1201 agggggagga agaggaagag atggcaggag gggctgccga cacccaggaa tgggagagag
     1261 ggcgggagcc tgctgcccac cagcggagtg gcagctcctg gatgtgcccc agtgatccca
     1321 gttctcagat ggtgctaatg acatcaggac taggggacag tctgttggct gagactgaga
     1381 tgtgactctc cgcttggact tctgcacagc attgcatttg tctgtgtcct cactaccttc
     1441 ctccacagag cagggaaagg ccctggctgg ggctctggca gctcctggta gtggcacgag
     1501 gctctggaag ctgtcactgg gcaacagcct tgaggggtgg cggggggact tgaacccagg
     1561 gtactgactt tgaacttgtt ggcagctctg gctgcaaccc gctggctcgg aacagatttt
     1621 ataaactcca caacctga
//
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